© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4475 |
| Gene name | |
| Location | Contig_3:253031..254648 |
| Strand | - |
| Gene length (bp) | 1617 |
| Transcript length (bp) | 1254 |
| Coding sequence length (bp) | 1254 |
| Protein length (aa) | 418 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00804 | Syntaxin | Syntaxin | 2.4E-21 | 93 | 282 |
| PF05739 | SNARE | SNARE domain | 7.7E-13 | 286 | 335 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USH7|PSY1_SCHPO | Syntaxin-like protein psy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psy1 PE=3 SV=1 | 73 | 326 | 2.0E-41 |
| sp|P32867|SSO1_YEAST | Protein SSO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSO1 PE=1 SV=2 | 93 | 324 | 3.0E-38 |
| sp|Q59YF0|SSO2_CANAL | Protein transport protein SSO2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SSO2 PE=3 SV=1 | 93 | 343 | 4.0E-38 |
| sp|P39926|SSO2_YEAST | Protein SSO2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSO2 PE=1 SV=2 | 76 | 334 | 1.0E-37 |
| sp|P32856|STX2_HUMAN | Syntaxin-2 OS=Homo sapiens GN=STX2 PE=2 SV=3 | 171 | 339 | 7.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USH7|PSY1_SCHPO | Syntaxin-like protein psy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psy1 PE=3 SV=1 | 73 | 326 | 2.0E-41 |
| sp|P32867|SSO1_YEAST | Protein SSO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSO1 PE=1 SV=2 | 93 | 324 | 3.0E-38 |
| sp|Q59YF0|SSO2_CANAL | Protein transport protein SSO2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SSO2 PE=3 SV=1 | 93 | 343 | 4.0E-38 |
| sp|P39926|SSO2_YEAST | Protein SSO2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSO2 PE=1 SV=2 | 76 | 334 | 1.0E-37 |
| sp|P32856|STX2_HUMAN | Syntaxin-2 OS=Homo sapiens GN=STX2 PE=2 SV=3 | 171 | 339 | 7.0E-16 |
| sp|P32851|STX1A_RAT | Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 | 159 | 336 | 1.0E-12 |
| sp|O35526|STX1A_MOUSE | Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3 | 159 | 336 | 1.0E-12 |
| sp|P32850|STX1A_BOVIN | Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1 | 159 | 336 | 2.0E-12 |
| sp|Q16623|STX1A_HUMAN | Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1 | 159 | 339 | 2.0E-12 |
| sp|O16000|STX1A_CAEEL | Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 | 171 | 346 | 5.0E-12 |
| sp|Q24547|STX1A_DROME | Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 | 159 | 336 | 7.0E-12 |
| sp|Q5R4L2|STX1A_PONAB | Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1 | 159 | 339 | 1.0E-11 |
| sp|P61268|STX1B_SHEEP | Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 | 119 | 336 | 2.0E-10 |
| sp|P61267|STX1B_BOVIN | Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1 | 119 | 336 | 2.0E-10 |
| sp|P61265|STX1B_RAT | Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1 | 119 | 336 | 3.0E-10 |
| sp|P61264|STX1B_MOUSE | Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1 | 119 | 336 | 3.0E-10 |
| sp|P61266|STX1B_HUMAN | Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1 | 119 | 336 | 3.0E-10 |
| sp|Q00262|STX2_MOUSE | Syntaxin-2 OS=Mus musculus GN=Stx2 PE=1 SV=1 | 171 | 322 | 4.0E-09 |
| sp|Q42374|SY111_ARATH | Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 | 164 | 324 | 4.0E-09 |
| sp|O64791|SY124_ARATH | Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 | 173 | 339 | 4.0E-09 |
| sp|Q9SRV7|SY131_ARATH | Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 | 176 | 324 | 5.0E-09 |
| sp|P70452|STX4_MOUSE | Syntaxin-4 OS=Mus musculus GN=Stx4 PE=1 SV=1 | 184 | 345 | 9.0E-09 |
| sp|A8WVD0|STX1A_CAEBR | Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1 | 171 | 321 | 1.0E-08 |
| sp|Q08850|STX4_RAT | Syntaxin-4 OS=Rattus norvegicus GN=Stx4 PE=1 SV=1 | 184 | 345 | 1.0E-08 |
| sp|Q8VZU2|SY132_ARATH | Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 | 204 | 324 | 1.0E-08 |
| sp|P50279|STX2_RAT | Syntaxin-2 OS=Rattus norvegicus GN=Stx2 PE=1 SV=2 | 171 | 322 | 2.0E-08 |
| sp|Q9ZQZ8|SY123_ARATH | Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 | 173 | 326 | 3.0E-08 |
| sp|Q9D3G5|STX11_MOUSE | Syntaxin-11 OS=Mus musculus GN=Stx11 PE=1 SV=1 | 132 | 332 | 1.0E-07 |
| sp|Q13277|STX3_HUMAN | Syntaxin-3 OS=Homo sapiens GN=STX3 PE=1 SV=3 | 158 | 320 | 1.0E-07 |
| sp|Q12846|STX4_HUMAN | Syntaxin-4 OS=Homo sapiens GN=STX4 PE=1 SV=2 | 184 | 340 | 2.0E-07 |
| sp|O75558|STX11_HUMAN | Syntaxin-11 OS=Homo sapiens GN=STX11 PE=1 SV=1 | 132 | 325 | 3.0E-07 |
| sp|Q16932|STX_APLCA | Syntaxin OS=Aplysia californica PE=2 SV=1 | 157 | 329 | 3.0E-07 |
| sp|Q9ZSD4|SY121_ARATH | Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 | 190 | 324 | 6.0E-07 |
| sp|Q20024|STX3_CAEEL | Putative syntaxin-3 OS=Caenorhabditis elegans GN=syx-3 PE=3 SV=3 | 72 | 345 | 7.0E-07 |
| sp|Q08849|STX3_RAT | Syntaxin-3 OS=Rattus norvegicus GN=Stx3 PE=2 SV=1 | 158 | 320 | 7.0E-07 |
| sp|Q64704|STX3_MOUSE | Syntaxin-3 OS=Mus musculus GN=Stx3 PE=1 SV=1 | 158 | 320 | 8.0E-07 |
| sp|Q7KVY7|STX4_DROME | Syntaxin-4 OS=Drosophila melanogaster GN=Syx4 PE=2 SV=1 | 207 | 321 | 1.0E-06 |
| sp|Q9SVC2|SY122_ARATH | Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 | 72 | 326 | 1.0E-06 |
| sp|Q54JY7|STX7A_DICDI | Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 | 233 | 347 | 6.0E-06 |
| sp|Q9SXB0|SY125_ARATH | Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 | 173 | 324 | 8.0E-06 |
| sp|Q3SWZ3|STX4_BOVIN | Syntaxin-4 OS=Bos taurus GN=STX4 PE=2 SV=1 | 190 | 331 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 322 | 344 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4475 MSYGLVLYPTAAQPLAPPSYGGRPNPFDQRDDAPSGYGAPVRPPAASFGQPPGYGRGYNQGSSMDAGYGGANVEM APLAQNAGSMANGDPNSILNECRDIDRGIDDVEHNLEQLRVYQKRAMDDADSSSSSTANRQLDAISSETMDLYRG LTERVRTVKSSPESRTPKNNPQVSRVDRRLKAAIQQYQQVESQFRKRTQDQMARQYRIVRPEASEDEVRAAVEDT NGGQVFSQALMQSDRQGRARAALTAVQDRHAALVKIEQQMVELSQLFQDMDTLVVQQEVAVTQIEQKGEEVVENL DKGNEEIGVAVVTARKTRKKKWICLGICVVIVIIIAIVVLVYIFVIRGNGGGGNNNNNSKPAKRAIDAVPFVEIP ATLARRTLLDARQLFNEQETTDAADRMARLAHEKFHYPMLPQ* |
| Coding | >OphauB2|4475 ATGAGTTACGGGTTAGTCTTGTATCCGACCGCTGCCCAACCTCTTGCTCCGCCCTCATATGGCGGAAGGCCAAAC CCATTTGACCAGCGGGATGATGCTCCCAGTGGCTACGGAGCCCCCGTGAGGCCCCCTGCAGCGTCATTTGGCCAG CCACCAGGCTACGGACGTGGCTACAATCAGGGCTCCTCCATGGACGCAGGCTATGGAGGTGCCAATGTCGAGATG GCCCCTTTGGCCCAGAATGCCGGCTCCATGGCCAATGGCGACCCCAATAGCATTCTCAACGAGTGCCGAGATATC GACCGCGGCATCGACGATGTCGAACACAATCTCGAACAGCTGCGTGTTTATCAAAAGCGAGCCATGGACGATGCC GACAGTTCATCGTCCAGCACCGCCAACCGCCAACTCGACGCCATTTCATCCGAGACAATGGACCTCTACCGTGGC CTGACTGAACGCGTCCGCACCGTCAAGTCGAGTCCTGAGTCACGGACGCCCAAGAACAACCCACAGGTCAGCCGT GTCGACCGTCGGCTCAAGGCGGCCATTCAGCAGTATCAGCAAGTGGAATCACAGTTCCGCAAGCGCACTCAGGAT CAAATGGCTCGTCAGTATCGCATTGTACGCCCCGAGGCTTCTGAAGACGAGGTGCGAGCCGCAGTGGAAGACACA AATGGCGGCCAGGTCTTTAGCCAGGCCCTGATGCAGAGCGACCGTCAAGGGCGTGCCCGCGCTGCCCTGACGGCC GTCCAAGACCGCCACGCCGCCCTGGTCAAGATTGAGCAGCAAATGGTTGAGCTGTCACAGCTGTTCCAGGACATG GACACGCTGGTGGTGCAGCAGGAAGTGGCTGTGACGCAGATTGAGCAAAAGGGCGAGGAGGTTGTGGAAAACCTG GACAAGGGCAACGAGGAGATTGGCGTCGCCGTCGTCACGGCCCGCAAGACGCGCAAGAAGAAATGGATTTGCCTG GGAATCTGCGTTGTCATTGTCATCATCATCGCCATTGTCGTCCTGGTCTACATTTTTGTCATTCGCGGCAACGGC GGAGGAGGAAACAACAACAACAATAGCAAGCCTGCAAAACGCGCAATCGACGCGGTCCCATTTGTCGAGATTCCG GCCACGCTGGCACGCCGCACCCTGCTTGATGCACGCCAGCTCTTTAACGAGCAAGAGACTACCGACGCTGCCGAT CGAATGGCTCGCCTGGCCCACGAGAAATTCCATTACCCTATGCTTCCGCAATGA |
| Transcript | >OphauB2|4475 ATGAGTTACGGGTTAGTCTTGTATCCGACCGCTGCCCAACCTCTTGCTCCGCCCTCATATGGCGGAAGGCCAAAC CCATTTGACCAGCGGGATGATGCTCCCAGTGGCTACGGAGCCCCCGTGAGGCCCCCTGCAGCGTCATTTGGCCAG CCACCAGGCTACGGACGTGGCTACAATCAGGGCTCCTCCATGGACGCAGGCTATGGAGGTGCCAATGTCGAGATG GCCCCTTTGGCCCAGAATGCCGGCTCCATGGCCAATGGCGACCCCAATAGCATTCTCAACGAGTGCCGAGATATC GACCGCGGCATCGACGATGTCGAACACAATCTCGAACAGCTGCGTGTTTATCAAAAGCGAGCCATGGACGATGCC GACAGTTCATCGTCCAGCACCGCCAACCGCCAACTCGACGCCATTTCATCCGAGACAATGGACCTCTACCGTGGC CTGACTGAACGCGTCCGCACCGTCAAGTCGAGTCCTGAGTCACGGACGCCCAAGAACAACCCACAGGTCAGCCGT GTCGACCGTCGGCTCAAGGCGGCCATTCAGCAGTATCAGCAAGTGGAATCACAGTTCCGCAAGCGCACTCAGGAT CAAATGGCTCGTCAGTATCGCATTGTACGCCCCGAGGCTTCTGAAGACGAGGTGCGAGCCGCAGTGGAAGACACA AATGGCGGCCAGGTCTTTAGCCAGGCCCTGATGCAGAGCGACCGTCAAGGGCGTGCCCGCGCTGCCCTGACGGCC GTCCAAGACCGCCACGCCGCCCTGGTCAAGATTGAGCAGCAAATGGTTGAGCTGTCACAGCTGTTCCAGGACATG GACACGCTGGTGGTGCAGCAGGAAGTGGCTGTGACGCAGATTGAGCAAAAGGGCGAGGAGGTTGTGGAAAACCTG GACAAGGGCAACGAGGAGATTGGCGTCGCCGTCGTCACGGCCCGCAAGACGCGCAAGAAGAAATGGATTTGCCTG GGAATCTGCGTTGTCATTGTCATCATCATCGCCATTGTCGTCCTGGTCTACATTTTTGTCATTCGCGGCAACGGC GGAGGAGGAAACAACAACAACAATAGCAAGCCTGCAAAACGCGCAATCGACGCGGTCCCATTTGTCGAGATTCCG GCCACGCTGGCACGCCGCACCCTGCTTGATGCACGCCAGCTCTTTAACGAGCAAGAGACTACCGACGCTGCCGAT CGAATGGCTCGCCTGGCCCACGAGAAATTCCATTACCCTATGCTTCCGCAATGA |
| Gene | >OphauB2|4475 ATGAGTGTGAGTGTTTCACCCCTGCTTTCCCTACCGTTGGCGTTTCAACCCAGCGATGCAGCGGGTCCGCCTTTG GACCTGCCAGAACCCTTTCATCACGGCCGCTTGACCTTCTTCCTCTGCAAACTCGTTGTCATTGCTCTCCATCAC TCAAGACGGCCTTTTTGCTGACCATGGCGCAACAGTACGGGTTAGTCTTGTATCCGACCGCTGCCCAACCTCTTG CTCCGCCCTCGTCTCTCGCCTGGCAGTCTTTGGTCTCTTGTCGCTGGCCATGTGCTAACACCAGCCTTTTAGATA TGGCGGAAGGCCAAACCCATTTGACCAGCGGGATGATGCTCCCAGTGGCTACGGAGCCCCCGTGAGGCCCCCTGC AGCGTCATTTGGCCAGCCACCAGGCTACGGACGTGGCTACAATCAGGGCTCCTCCATGGACGCAGGCTATGGAGG TGTGCATCTCGCTCAATGTGCCCTTGATGGCCAAGGCCCGGCTGACTGTCTGCCACCAGGTGCCAATGTCGAGAT GGCCCCTTTGGCCCAGAATGCCGGCTCCATGGCCAATGGCGACCCCAATAGCATTCTCAACGAGTGCCGAGATAT CGACCGCGGCATCGACGATGTCGAACACAATCTCGAACAGCTGCGTGTTTATCAAAAGCGAGCCATGGACGATGC CGACAGTTCATCGTCCAGCACCGCCAACCGCCAACTCGACGCCATTTCATCCGAGACAATGGACCTCTACCGTGG CCTGACTGAACGCGTCCGCACCGTCAAGTCGAGTCCTGAGTCACGGACGCCCAAGAACAACCCACAGGTCAGCCG TGTCGACCGTCGGCTCAAGGCGGCCATTCAGCAGTATCAGCAAGTGGAATCACAGTTCCGCAAGCGCACTCAGGA TCAAATGGCTCGTCAGTATCGCATTGTACGCCCCGAGGCTTCTGAAGACGAGGTGCGAGCCGCAGTGGAAGACAC AAATGGCGGCCAGGTCTTTAGCCAGGCCCTGATGCAGAGCGACCGTCAAGGGCGTGCCCGCGCTGCCCTGACGGC CGTCCAAGACCGCCACGCCGCCCTGGTCAAGATTGAGCAGCAAATGGTTGAGCTGTCACAGCTGTTCCAGGACAT GGACACGCTGGTGGTGCAGCAGGAAGTGGCTGTGACGCAGATTGAGCAAAAGGGCGAGGAGGTTGTGGAAAACCT GGACAAGGGCAACGAGGAGATTGGCGTCGCCGTCGTCACGGCCCGCAAGACGCGCAAGAAGAAATGGATTTGCCT GGGAATCTGCGGTGAGTTGCGTCGTGTCCTTGCTCCAGCACTGCTATGTGTCTGACTCGAGGGCTTTTCTCAGTT GTCATTGTCATCATCATCGCCATTGTCGTCCTGGTCTACATTTTTGTCATTCGCGGCAACGGCGGAGGAGGAAAC AACAACAACAATAGCAAGCCTGCAAAACGCGCAATCGACGCGGTCCCATTTGTCGAGATTCCGGCCACGCTGGCA CGCCGCACCCTGCTTGATGCACGCCAGCTCTTTAACGAGCAAGAGACTACCGACGCTGCCGATCGAATGGCTCGC CTGGCCCACGAGAAATTCCATTACCCTATGCTTCCGCAATGA |