Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4462
Gene name
LocationContig_3:212929..213675
Strand+
Gene length (bp)746
Transcript length (bp)684
Coding sequence length (bp)684
Protein length (aa) 228

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 4.6E-03 94 132
PF01476 LysM LysM domain 4.8E-02 182 213

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 68 227 1.0E-37
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 68 227 8.0E-34
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 76 227 8.0E-33
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 66 227 1.0E-21
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 57 226 7.0E-16
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 68 227 1.0E-37
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 68 227 8.0E-34
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 76 227 8.0E-33
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 66 227 1.0E-21
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 57 226 7.0E-16
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 99 226 7.0E-13
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 88 141 1.0E-07
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 175 226 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4462
MKLLASIALLASACQAAQIGARYFALGNQLLTRDSPSKPLEPEGGSLHPVARAVSSQASTATSLLPATRAKPAND
VPTPSPLQPGTIAGCKAFYKVQENDHCIEVAKKNKISLPDFLKWNPLVGGEACTNLWLGYYVCVSVTESTPPTTT
LTTTTTSTTTSITTPTPTQAGMVHNCKTFHWVESGQDCETIAAQYGVTRADIITWNPAAGPECRGLWAHTYCCVG
VL*
Coding >OphauB2|4462
ATGAAGCTGCTCGCCTCGATTGCCCTCTTGGCCTCTGCCTGTCAGGCGGCACAGATTGGAGCGCGATACTTTGCT
CTTGGAAACCAACTCTTGACGCGAGACTCGCCGTCCAAGCCCCTGGAGCCAGAAGGCGGCTCGCTCCATCCAGTG
GCCAGAGCCGTCTCGTCTCAGGCCTCGACGGCGACTAGCTTGCTGCCAGCCACTCGTGCCAAGCCGGCCAATGAT
GTTCCCACGCCTTCTCCTCTGCAGCCCGGCACCATTGCCGGCTGCAAGGCCTTTTACAAGGTGCAAGAAAACGAC
CACTGCATCGAGGTGGCGAAAAAGAACAAGATTTCGCTGCCAGATTTTCTCAAGTGGAATCCCCTGGTTGGCGGC
GAGGCTTGCACCAACCTCTGGCTCGGCTACTATGTCTGTGTCTCGGTGACGGAGAGCACGCCGCCCACAACCACG
CTCACCACCACGACAACGTCCACCACCACCAGCATTACCACTCCCACGCCAACCCAAGCGGGCATGGTGCACAAC
TGCAAGACCTTTCACTGGGTCGAGTCGGGGCAGGACTGCGAGACGATTGCCGCGCAGTACGGCGTCACGAGGGCC
GACATTATTACCTGGAATCCTGCCGCTGGCCCCGAGTGTAGGGGTCTTTGGGCCCATACCTATTGCTGCGTTGGC
GTGCTTTAG
Transcript >OphauB2|4462
ATGAAGCTGCTCGCCTCGATTGCCCTCTTGGCCTCTGCCTGTCAGGCGGCACAGATTGGAGCGCGATACTTTGCT
CTTGGAAACCAACTCTTGACGCGAGACTCGCCGTCCAAGCCCCTGGAGCCAGAAGGCGGCTCGCTCCATCCAGTG
GCCAGAGCCGTCTCGTCTCAGGCCTCGACGGCGACTAGCTTGCTGCCAGCCACTCGTGCCAAGCCGGCCAATGAT
GTTCCCACGCCTTCTCCTCTGCAGCCCGGCACCATTGCCGGCTGCAAGGCCTTTTACAAGGTGCAAGAAAACGAC
CACTGCATCGAGGTGGCGAAAAAGAACAAGATTTCGCTGCCAGATTTTCTCAAGTGGAATCCCCTGGTTGGCGGC
GAGGCTTGCACCAACCTCTGGCTCGGCTACTATGTCTGTGTCTCGGTGACGGAGAGCACGCCGCCCACAACCACG
CTCACCACCACGACAACGTCCACCACCACCAGCATTACCACTCCCACGCCAACCCAAGCGGGCATGGTGCACAAC
TGCAAGACCTTTCACTGGGTCGAGTCGGGGCAGGACTGCGAGACGATTGCCGCGCAGTACGGCGTCACGAGGGCC
GACATTATTACCTGGAATCCTGCCGCTGGCCCCGAGTGTAGGGGTCTTTGGGCCCATACCTATTGCTGCGTTGGC
GTGCTTTAG
Gene >OphauB2|4462
ATGAAGCTGCTCGCCTCGATTGCCCTCTTGGCCTCTGCCTGTCAGGCGGCACAGATTGGAGCGCGATACTTTGCT
CTTGGAAACCAACTCTTGACGCGAGACTCGCCGTCCAAGCCCCTGGAGCCAGAAGGCGGCTCGCTCCATCCAGTG
GCCAGAGCCGTCTCGTCTCAGGCCTCGACGGCGACTAGCTTGCTGCCAGCCACTCGTGCCAAGCCGGCCAATGAG
TGAGGCGGTCCTCCCCCAACCTGGTAGACTGCTTGTGTAGGCTGACTAGACTTGGGGATAGTGTTCCCACGCCTT
CTCCTCTGCAGCCCGGCACCATTGCCGGCTGCAAGGCCTTTTACAAGGTGCAAGAAAACGACCACTGCATCGAGG
TGGCGAAAAAGAACAAGATTTCGCTGCCAGATTTTCTCAAGTGGAATCCCCTGGTTGGCGGCGAGGCTTGCACCA
ACCTCTGGCTCGGCTACTATGTCTGTGTCTCGGTGACGGAGAGCACGCCGCCCACAACCACGCTCACCACCACGA
CAACGTCCACCACCACCAGCATTACCACTCCCACGCCAACCCAAGCGGGCATGGTGCACAACTGCAAGACCTTTC
ACTGGGTCGAGTCGGGGCAGGACTGCGAGACGATTGCCGCGCAGTACGGCGTCACGAGGGCCGACATTATTACCT
GGAATCCTGCCGCTGGCCCCGAGTGTAGGGGTCTTTGGGCCCATACCTATTGCTGCGTTGGCGTGCTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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