© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4452 |
| Gene name | |
| Location | Contig_3:189957..190790 |
| Strand | + |
| Gene length (bp) | 833 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04722 | Ssu72 | Ssu72-like protein | 2.1E-86 | 25 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IPC8|SSU72_GIBZE | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SSU72 PE=3 SV=1 | 1 | 255 | 6.0E-156 |
| sp|Q2HFZ9|SSU72_CHAGB | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SSU72 PE=3 SV=1 | 5 | 255 | 4.0E-141 |
| sp|Q7SFY0|SSU72_NEUCR | RNA polymerase II subunit A C-terminal domain phosphatase ssu-72 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1 | 12 | 255 | 7.0E-140 |
| sp|Q2UPU5|SSU72_ASPOR | RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ssu72 PE=3 SV=1 | 8 | 255 | 1.0E-126 |
| sp|Q4WHY5|SSU72_ASPFU | RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ssu72 PE=3 SV=1 | 6 | 255 | 8.0E-124 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IPC8|SSU72_GIBZE | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SSU72 PE=3 SV=1 | 1 | 255 | 6.0E-156 |
| sp|Q2HFZ9|SSU72_CHAGB | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SSU72 PE=3 SV=1 | 5 | 255 | 4.0E-141 |
| sp|Q7SFY0|SSU72_NEUCR | RNA polymerase II subunit A C-terminal domain phosphatase ssu-72 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1 | 12 | 255 | 7.0E-140 |
| sp|Q2UPU5|SSU72_ASPOR | RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ssu72 PE=3 SV=1 | 8 | 255 | 1.0E-126 |
| sp|Q4WHY5|SSU72_ASPFU | RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ssu72 PE=3 SV=1 | 6 | 255 | 8.0E-124 |
| sp|Q6C195|SSU72_YARLI | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SSU72 PE=3 SV=1 | 24 | 255 | 1.0E-69 |
| sp|O42868|SSU72_SCHPO | RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssu72 PE=1 SV=1 | 21 | 255 | 1.0E-69 |
| sp|Q6CQ61|SSU72_KLULA | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SSU72 PE=3 SV=1 | 25 | 255 | 4.0E-63 |
| sp|Q6FMU7|SSU72_CANGA | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SSU72 PE=3 SV=1 | 25 | 255 | 6.0E-63 |
| sp|Q6BYP7|SSU72_DEBHA | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SSU72 PE=3 SV=2 | 25 | 255 | 6.0E-60 |
| sp|P53538|SSU72_YEAST | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSU72 PE=1 SV=1 | 25 | 255 | 7.0E-60 |
| sp|Q75E60|SSU72_ASHGO | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SSU72 PE=3 SV=1 | 25 | 255 | 3.0E-58 |
| sp|P0CR76|SSU72_CRYNJ | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SSU72 PE=3 SV=1 | 45 | 204 | 1.0E-50 |
| sp|P0CR77|SSU72_CRYNB | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SSU72 PE=3 SV=1 | 45 | 204 | 1.0E-50 |
| sp|Q5ZJQ7|SSU72_CHICK | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1 | 21 | 201 | 1.0E-49 |
| sp|Q17QI2|SSU72_BOVIN | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1 | 21 | 201 | 4.0E-49 |
| sp|Q4KLK9|SSU72_RAT | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1 | 21 | 217 | 5.0E-49 |
| sp|Q9CY97|SSU72_MOUSE | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1 | 21 | 217 | 5.0E-49 |
| sp|Q9NP77|SSU72_HUMAN | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1 | 21 | 201 | 7.0E-49 |
| sp|Q6PC19|SSU72_DANRE | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1 | 21 | 201 | 1.0E-48 |
| sp|Q6NRQ7|SSU72_XENLA | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1 | 21 | 201 | 3.0E-48 |
| sp|Q558Z3|SSU72_DICDI | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1 | 26 | 198 | 2.0E-39 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0006397 | mRNA processing | Yes |
| GO:0004721 | phosphoprotein phosphatase activity | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0043226 | organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016791 | phosphatase activity | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0043229 | intracellular organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4452 MAAVNGATVTPAENGTAGEQPPFKLKFCTVCASNQNRSMEAHLRLSQANFPVISFGTGSLVRLPGPTITQPNVYH FNKTSYDSMYKELESKDTRLYRGNGILNMLDRNREVKWGPERWQDWAVGIPRLQHVKDRGHEGTEGGVVDVVFTC EERCWDAVIDDLLMRGSPLNRPVHVINVDIKDNHEEAHIGGQGILDLANSLNAAAAEERQATGSAIFDNGSAAAR ASFDERVPEILAAWQERWPKLPSTWTLAWF* |
| Coding | >OphauB2|4452 ATGGCAGCTGTAAATGGAGCAACTGTCACTCCGGCCGAGAATGGCACGGCAGGCGAGCAACCGCCCTTCAAGCTC AAGTTTTGCACGGTATGCGCCAGCAACCAAAACCGGTCCATGGAGGCACATCTACGATTATCGCAAGCCAACTTT CCCGTAATCTCATTCGGCACCGGCTCCTTGGTGCGTTTACCAGGACCGACTATTACGCAGCCCAATGTGTATCAT TTCAACAAGACGTCCTATGACAGCATGTACAAGGAGCTTGAATCCAAAGATACGCGCCTATACAGAGGCAATGGC ATCCTCAACATGCTCGACAGAAACAGAGAAGTCAAGTGGGGCCCTGAAAGATGGCAGGACTGGGCTGTTGGCATT CCGCGTCTGCAGCATGTCAAGGATCGTGGGCACGAGGGCACAGAAGGCGGCGTCGTTGACGTAGTCTTTACTTGT GAGGAGCGCTGTTGGGATGCAGTTATTGACGACCTCTTGATGCGAGGCTCCCCCCTCAATCGACCCGTTCATGTC ATCAATGTGGACATCAAGGACAATCACGAAGAGGCTCACATTGGCGGGCAGGGCATTCTCGACTTGGCAAATTCT CTTAATGCTGCTGCGGCCGAGGAGCGCCAAGCGACGGGCTCGGCCATTTTTGATAATGGCAGTGCCGCGGCTCGA GCCAGCTTTGACGAGAGAGTTCCCGAGATTCTGGCTGCCTGGCAAGAACGCTGGCCGAAGCTACCGTCAACGTGG ACATTGGCTTGGTTTTGA |
| Transcript | >OphauB2|4452 ATGGCAGCTGTAAATGGAGCAACTGTCACTCCGGCCGAGAATGGCACGGCAGGCGAGCAACCGCCCTTCAAGCTC AAGTTTTGCACGGTATGCGCCAGCAACCAAAACCGGTCCATGGAGGCACATCTACGATTATCGCAAGCCAACTTT CCCGTAATCTCATTCGGCACCGGCTCCTTGGTGCGTTTACCAGGACCGACTATTACGCAGCCCAATGTGTATCAT TTCAACAAGACGTCCTATGACAGCATGTACAAGGAGCTTGAATCCAAAGATACGCGCCTATACAGAGGCAATGGC ATCCTCAACATGCTCGACAGAAACAGAGAAGTCAAGTGGGGCCCTGAAAGATGGCAGGACTGGGCTGTTGGCATT CCGCGTCTGCAGCATGTCAAGGATCGTGGGCACGAGGGCACAGAAGGCGGCGTCGTTGACGTAGTCTTTACTTGT GAGGAGCGCTGTTGGGATGCAGTTATTGACGACCTCTTGATGCGAGGCTCCCCCCTCAATCGACCCGTTCATGTC ATCAATGTGGACATCAAGGACAATCACGAAGAGGCTCACATTGGCGGGCAGGGCATTCTCGACTTGGCAAATTCT CTTAATGCTGCTGCGGCCGAGGAGCGCCAAGCGACGGGCTCGGCCATTTTTGATAATGGCAGTGCCGCGGCTCGA GCCAGCTTTGACGAGAGAGTTCCCGAGATTCTGGCTGCCTGGCAAGAACGCTGGCCGAAGCTACCGTCAACGTGG ACATTGGCTTGGTTTTGA |
| Gene | >OphauB2|4452 ATGGCAGCTGTAAATGGAGCAACTGTCACTCCGGCCGAGAATGGCACGGCAGGCGAGCAACCGCCCTTCAAGCTC AAGTTTTGCACGGTATGCGCCAGCAACCAAAACCGGTACGCAGCCAGCCGAGCTAGAGTCGCGTGTTTGCTTAGC CTGGCTCGACTGACTGGCCTTGCAGGTCCATGGAGGCACATCTACGATTATCGCAAGCCAACTTTCCCGTAATCT CATTCGGCACCGGCTCCTTGGTGCGTTTACCAGGACCGACTATTACGCAGCCCAATGTGTATCATTTCAACAAGA CGTCCTATGACAGCATGTACAAGGAGCTTGAATCCAAAGATACGCGCCTATACAGAGGCAATGGCATCCTCAACA TGCTCGACAGAAACAGAGAAGTCAAGTGGGGCCCTGAAAGATGGCAGGACTGGGCTGTTGGCATTCCGCGTCTGC AGCATGTCAAGGATCGTGGGCACGAGGGCACAGAAGGCGGCGTCGTTGACGTAGTCTTTACTTGTGAGGAGCGCT GTTGGGATGCAGTTATTGACGACCTCTTGATGCGAGGCTCCCCCCTCAATCGACCCGTTCATGTCATCAATGTGG ACATCAAGGACAATCACGAAGAGGCTCACATTGGCGGGCAGGGCATTCTCGACTTGGCAAATTCTCTTAATGCTG CTGCGGCCGAGGAGCGCCAAGCGACGGGCTCGGCCATTTTTGATAATGGCAGTGCCGCGGCTCGAGCCAGCTTTG ACGAGAGAGTTCCCGAGATTCTGGCTGCCTGGCAAGAACGCTGGCCGAAGCTACCGTCAACGTGGACATTGGCTT GGTTTTGA |