© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4448 |
| Gene name | |
| Location | Contig_3:178926..180876 |
| Strand | - |
| Gene length (bp) | 1950 |
| Transcript length (bp) | 1665 |
| Coding sequence length (bp) | 1665 |
| Protein length (aa) | 555 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.7E-29 | 20 | 304 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.9E-09 | 320 | 497 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.4E-08 | 28 | 165 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 10 | 482 | 2.0E-66 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 10 | 460 | 2.0E-47 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 11 | 456 | 5.0E-42 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 10 | 456 | 7.0E-38 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 25 | 175 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 10 | 482 | 2.0E-66 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 10 | 460 | 2.0E-47 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 11 | 456 | 5.0E-42 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 10 | 456 | 7.0E-38 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 25 | 175 | 2.0E-10 |
| sp|Q5HHX4|NORA_STAAC | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|P0A0J6|NORA_STAAW | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|P0A0J7|NORA_STAAU | Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|P0A0J5|NORA_STAAN | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|P0A0J4|NORA_STAAM | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|Q6GBD5|NORA_STAAS | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | 13 | 175 | 4.0E-09 |
| sp|Q6GIU7|NORA_STAAR | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | 13 | 175 | 6.0E-09 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 17 | 220 | 1.0E-08 |
| sp|D8MQN9|MDTG_ERWBE | Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | 27 | 237 | 2.0E-08 |
| sp|P02981|TCR3_ECOLX | Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1 | 25 | 172 | 5.0E-08 |
| sp|Q07282|TCR5_ECOLX | Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1 | 25 | 175 | 1.0E-07 |
| sp|P0A4K5|PMRA_STRR6 | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | 28 | 166 | 1.0E-07 |
| sp|P0A4K4|PMRA_STRPN | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | 28 | 166 | 1.0E-07 |
| sp|Q0P5M9|MFS10_BOVIN | Major facilitator superfamily domain-containing protein 10 OS=Bos taurus GN=MFSD10 PE=2 SV=1 | 55 | 217 | 1.0E-07 |
| sp|Q14728|MFS10_HUMAN | Major facilitator superfamily domain-containing protein 10 OS=Homo sapiens GN=MFSD10 PE=1 SV=1 | 53 | 217 | 4.0E-07 |
| sp|A8GCZ5|MDTG_SERP5 | Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | 28 | 166 | 9.0E-07 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 11 | 162 | 9.0E-07 |
| sp|P58120|PMRA_LACLA | Multi-drug resistance efflux pump PmrA homolog OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=pmrA PE=3 SV=1 | 32 | 166 | 2.0E-06 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 13 | 162 | 2.0E-06 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 32 | 203 | 3.0E-06 |
| sp|Q9D2V8|MFS10_MOUSE | Major facilitator superfamily domain-containing protein 10 OS=Mus musculus GN=Mfsd10 PE=1 SV=1 | 55 | 217 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 50 | 69 | 19 |
| 3 | 84 | 106 | 22 |
| 4 | 144 | 166 | 22 |
| 5 | 186 | 208 | 22 |
| 6 | 280 | 297 | 17 |
| 7 | 334 | 356 | 22 |
| 8 | 369 | 391 | 22 |
| 9 | 396 | 418 | 22 |
| 10 | 431 | 453 | 22 |
| 11 | 463 | 485 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4448 MVASSKTLKLPVKQLTILVIARLAEPIALTSVFPYLPEMIRDFGVGQNQVAKWAGITAAIFAISQGLTAVSWGRA ADRVGRKPILLCGLFCTMVCFLAWGMSTSLAMAMTVRAIQGFSNGNVAIIRTIVAEIVPEKELQPRAFSLMPLVW SLGSVIGPAFGGALAQPAEKYPSVFGHLDFFKRFPYALPNFVATVFFLTSATTVFLFFQETLPAKRHRRDWGLEA GQRLTRLLSRNPFRHRKGSIEDAQPAPICDEDESSKPPAAPISPPGVKELCKRPIIISLIAYTFLALHSIAYDQS VTVFLNYPVIKSTPENTRLPFYFSGGHGLRSSTIGTLFTIYGIVCAIVQFVFYPSLVKRFGIVNCSRACVIILPI AYALTPFTSLLPTAGTRFVAILCVLIFKGIGSIMSFPCATILLTNSCESIRILGTVNGLATSFSGFARAIGPATT GIIFSWGADHGYIISAYLYLVLLALLGAIPAYMTVEGPGPSASSTIETSANDGCVTDDRLRHPCDAAAYEGDEDV GSDDGSSVHSPLLGNGKQKQPASYNAVNH* |
| Coding | >OphauB2|4448 ATGGTCGCATCGTCCAAGACGCTCAAGCTGCCCGTCAAGCAATTGACTATACTGGTCATTGCACGGCTTGCTGAG CCCATCGCCCTCACTTCCGTCTTTCCTTACCTACCCGAGATGATTCGCGACTTTGGCGTTGGCCAGAACCAGGTG GCAAAATGGGCCGGCATCACCGCTGCCATTTTTGCCATCTCTCAGGGCCTCACTGCTGTGTCGTGGGGTCGCGCT GCAGACCGCGTTGGTCGCAAGCCCATTTTGCTTTGTGGTCTCTTTTGCACCATGGTTTGCTTCCTTGCCTGGGGC ATGTCCACCAGCTTAGCCATGGCCATGACTGTTCGCGCAATCCAGGGCTTCAGTAATGGGAATGTGGCAATCATC AGAACAATAGTGGCCGAGATTGTGCCAGAAAAAGAGCTACAGCCCCGAGCATTCTCCCTCATGCCCCTTGTCTGG TCCCTTGGCTCTGTCATTGGTCCTGCGTTTGGTGGCGCCCTCGCTCAGCCGGCCGAAAAGTATCCAAGTGTATTC GGTCATCTCGACTTCTTCAAACGCTTTCCTTACGCGCTCCCCAACTTTGTCGCCACCGTCTTCTTTCTAACCTCA GCAACCACGGTTTTTCTATTTTTCCAGGAAACATTGCCAGCCAAGCGTCATCGCCGAGACTGGGGACTAGAAGCA GGACAACGGCTGACACGGCTCCTATCCCGAAACCCGTTCCGTCATCGAAAAGGTTCAATCGAGGATGCTCAGCCA GCCCCCATATGTGACGAGGACGAAAGCTCCAAGCCTCCAGCAGCGCCCATTTCACCTCCAGGGGTCAAGGAGCTA TGCAAGCGACCCATCATAATCAGCCTCATTGCCTACACGTTTCTGGCCCTTCACTCCATTGCATACGACCAAAGC GTCACCGTCTTCCTCAATTATCCCGTCATCAAGTCTACCCCGGAAAATACGCGACTACCTTTTTACTTCAGCGGT GGCCATGGACTGCGGTCGAGCACCATTGGCACCTTGTTTACTATTTATGGAATTGTCTGTGCCATTGTGCAATTC GTCTTTTATCCATCACTCGTCAAGCGGTTTGGCATCGTCAATTGTTCGCGAGCTTGCGTCATCATCCTACCGATA GCCTACGCCTTGACTCCCTTCACATCTCTCTTGCCTACTGCCGGCACCCGCTTTGTGGCCATTCTTTGTGTGCTC ATCTTCAAGGGCATCGGTTCCATCATGTCCTTTCCCTGTGCCACTATACTTCTTACCAACTCTTGCGAATCCATT CGCATTCTTGGTACCGTCAATGGTCTCGCAACGTCCTTTAGCGGCTTCGCCCGCGCTATTGGACCCGCAACAACA GGCATCATCTTCTCTTGGGGCGCCGATCACGGCTACATCATCTCGGCATATTTGTATCTGGTTCTTCTGGCACTT CTTGGCGCAATACCTGCCTACATGACTGTCGAAGGCCCTGGCCCCTCGGCATCCTCCACAATAGAAACAAGCGCC AACGACGGCTGTGTCACGGATGACCGTCTCCGCCATCCCTGTGATGCGGCTGCCTATGAAGGCGACGAAGATGTT GGTTCCGATGATGGCTCCAGCGTCCATTCCCCTCTCTTGGGCAACGGAAAACAGAAGCAGCCAGCATCATACAAC GCAGTCAACCACTGA |
| Transcript | >OphauB2|4448 ATGGTCGCATCGTCCAAGACGCTCAAGCTGCCCGTCAAGCAATTGACTATACTGGTCATTGCACGGCTTGCTGAG CCCATCGCCCTCACTTCCGTCTTTCCTTACCTACCCGAGATGATTCGCGACTTTGGCGTTGGCCAGAACCAGGTG GCAAAATGGGCCGGCATCACCGCTGCCATTTTTGCCATCTCTCAGGGCCTCACTGCTGTGTCGTGGGGTCGCGCT GCAGACCGCGTTGGTCGCAAGCCCATTTTGCTTTGTGGTCTCTTTTGCACCATGGTTTGCTTCCTTGCCTGGGGC ATGTCCACCAGCTTAGCCATGGCCATGACTGTTCGCGCAATCCAGGGCTTCAGTAATGGGAATGTGGCAATCATC AGAACAATAGTGGCCGAGATTGTGCCAGAAAAAGAGCTACAGCCCCGAGCATTCTCCCTCATGCCCCTTGTCTGG TCCCTTGGCTCTGTCATTGGTCCTGCGTTTGGTGGCGCCCTCGCTCAGCCGGCCGAAAAGTATCCAAGTGTATTC GGTCATCTCGACTTCTTCAAACGCTTTCCTTACGCGCTCCCCAACTTTGTCGCCACCGTCTTCTTTCTAACCTCA GCAACCACGGTTTTTCTATTTTTCCAGGAAACATTGCCAGCCAAGCGTCATCGCCGAGACTGGGGACTAGAAGCA GGACAACGGCTGACACGGCTCCTATCCCGAAACCCGTTCCGTCATCGAAAAGGTTCAATCGAGGATGCTCAGCCA GCCCCCATATGTGACGAGGACGAAAGCTCCAAGCCTCCAGCAGCGCCCATTTCACCTCCAGGGGTCAAGGAGCTA TGCAAGCGACCCATCATAATCAGCCTCATTGCCTACACGTTTCTGGCCCTTCACTCCATTGCATACGACCAAAGC GTCACCGTCTTCCTCAATTATCCCGTCATCAAGTCTACCCCGGAAAATACGCGACTACCTTTTTACTTCAGCGGT GGCCATGGACTGCGGTCGAGCACCATTGGCACCTTGTTTACTATTTATGGAATTGTCTGTGCCATTGTGCAATTC GTCTTTTATCCATCACTCGTCAAGCGGTTTGGCATCGTCAATTGTTCGCGAGCTTGCGTCATCATCCTACCGATA GCCTACGCCTTGACTCCCTTCACATCTCTCTTGCCTACTGCCGGCACCCGCTTTGTGGCCATTCTTTGTGTGCTC ATCTTCAAGGGCATCGGTTCCATCATGTCCTTTCCCTGTGCCACTATACTTCTTACCAACTCTTGCGAATCCATT CGCATTCTTGGTACCGTCAATGGTCTCGCAACGTCCTTTAGCGGCTTCGCCCGCGCTATTGGACCCGCAACAACA GGCATCATCTTCTCTTGGGGCGCCGATCACGGCTACATCATCTCGGCATATTTGTATCTGGTTCTTCTGGCACTT CTTGGCGCAATACCTGCCTACATGACTGTCGAAGGCCCTGGCCCCTCGGCATCCTCCACAATAGAAACAAGCGCC AACGACGGCTGTGTCACGGATGACCGTCTCCGCCATCCCTGTGATGCGGCTGCCTATGAAGGCGACGAAGATGTT GGTTCCGATGATGGCTCCAGCGTCCATTCCCCTCTCTTGGGCAACGGAAAACAGAAGCAGCCAGCATCATACAAC GCAGTCAACCACTGA |
| Gene | >OphauB2|4448 ATGGTCGCATCGTCCAAGACGCTCAAGCTGCCCGTCAAGCAATTGACTATACTGGGTACGTCGAGAAGCAATTCT TGTTGCTTCCAACCCACCGTGTGCAAATGGAGTGGCCCACTGATCAATTGCAGTCATTGCACGGCTTGCTGAGCC CATCGCCCTCACTTCCGTCTTTCCTTACCTACCCGAGATGATTCGCGACTTTGGCGTTGGCCAGAACCAGGTGGC AAAATGGGCCGGCATCACCGCTGCCATTTTTGCCATCTCTCAGGGCCTCACTGCTGTGTCGTGGGGTCGCGCTGC AGACCGCGTTGGTCGCAAGCCCATTTTGCTTTGTGGTCTCTTTTGCACCATGGTTTGCTTCCTTGCCTGGGGCAT GTCCACCAGCTTAGCCATGGCCATGACTGTTCGCGCAATCCAGGGCTTCAGTAATGGGAATGGTGAGCTGCTTTG CTTATGCTTCTATCCATGACCTTGTTGGGCAAAACGCCGTGCAAGCTGCTGACCCTTCTCCAGTGGCAATCATCA GAACAATAGTGGCCGAGATTGTGCCAGAAAAAGAGCTACAGCCCCGAGCATTCTCCCTCATGCCCCTTGTCTGGT CCCTTGGCTCTGTCATTGGTCCTGCGTTTGGTGGCGCCCTCGCTCAGCCGGCCGAAAAGTATCCAAGTGTATTCG GTCATCTCGACTTCTTCAAACGCTTTCCTTACGCGCTCCCCAACTTTGTCGCCACCGTCTTCTTTCTAACCTCAG CAACCACGGTTTTTCTATTTTTCCAGGTGCCTTTCCATTATCCCCATCTCCCACCTTGTCTGTTGTGACACGTCG CTGACATGTATTTGTCATCAAGGAAACATTGCCAGCCAAGCGTCATCGCCGAGACTGGGGACTAGAAGCAGGACA ACGGCTGACACGGCTCCTATCCCGAAACCCGTTCCGTCATCGAAAAGGTTCAATCGAGGATGCTCAGCCAGCCCC CATATGTGACGAGGACGAAAGCTCCAAGCCTCCAGCAGCGCCCATTTCACCTCCAGGGGTCAAGGAGCTATGCAA GCGACCCATCATAATCAGCCTCATTGCCTACACGTTTCTGGCCCTTCACTCCATTGCATACGACCAAAGCGTCAC CGTCTTCCTCAATTATCCCGTCATCAAGTCTACCCCGGAAAATACGCGACTACCTTTTTACTTCAGCGGTGGCCA TGGACTGCGGTCGAGCACCATTGGCACCTTGTTTACTATTTATGGAATTGTCTGTGCCATTGTGCAATTCGTCTT TTATCCATCACTCGTCAAGCGGTTTGGCATCGTCAATTGTTCGCGAGCTTGCGGTGAGTCTATTCTTGCTCAAGA CGCGGTTCTCTCGCAAGCAATGTGTTGCTGATATCGGTTACAGTCATCATCCTACCGATAGCCTACGCCTTGACT CCCTTCACATCTCTCTTGCCTACTGCCGGCACCCGCTTTGTGGCCATTCTTTGTGTGCTCATCTTCAAGGGCATC GGTTCCATCATGTCCTTTCCCTGTGCCACTATACTTCTTACCAACTCTTGCGAATCCATTCGCATTCTTGGTACC GTCAATGGTCTCGCAACGTCCTTTAGCGGCTTCGCCCGCGCTATTGGACCCGCAACAACAGGCATCATCTTCTCT TGGGGCGCCGATCACGGCTACATCATCTCGGCATATTTGTATCTGGTTCTTCTGGCACTTCTTGGCGCAATACCT GCCTACATGACTGTCGAAGGCCCTGGCCCCTCGGCATCCTCCACAATAGAAACAAGCGCCAACGACGGCTGTGTC ACGGATGACCGTCTCCGCCATCCCTGTGATGCGGCTGCCTATGAAGGCGACGAAGATGTTGGTTCCGATGATGGC TCCAGCGTCCATTCCCCTCTCTTGGGCAACGGAAAACAGAAGCAGCCAGCATCATACAACGCAGTCAACCACTGA |