Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4422
Gene name
LocationContig_3:118831..119272
Strand-
Gene length (bp)441
Transcript length (bp)309
Coding sequence length (bp)309
Protein length (aa) 103

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 8.8E-13 9 91

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 6 94 6.0E-15
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 6 94 6.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 6 94 1.0E-14
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 6 95 8.0E-14
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 6 95 8.0E-14
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 6 94 6.0E-15
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 6 94 6.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 6 94 1.0E-14
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 6 95 8.0E-14
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 6 95 8.0E-14
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 6 94 3.0E-12
sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 12 94 2.0E-07
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 14 94 7.0E-07
sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMB1 PE=1 SV=1 3 89 2.0E-06
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GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1902
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2759
Ophiocordyceps australis map64 (Brazil) OphauB2|4422 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|03375
Ophiocordyceps camponoti-rufipedis Ophun1|579
Ophiocordyceps kimflemingae Ophio5|797
Ophiocordyceps subramaniannii Hirsu2|199

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4422
MAQLEARSYLESLLNQNLRVHTTDGRLFWGSLKCTDADMNVVLANTYEYRQPSIRSLRRQMAETGASSVKADMTS
RYLGLVVVPGQHVVRLELEQFASQISD*
Coding >OphauB2|4422
ATGGCTCAGCTCGAGGCACGCAGCTACCTCGAATCTCTGCTGAATCAGAACCTCCGCGTCCACACTACTGATGGG
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGACATGAATGTCGTTTTGGCCAATACTTACGAGTACCGG
CAACCCTCTATACGTTCACTGCGCCGCCAAATGGCCGAGACGGGGGCGTCCTCGGTCAAGGCGGATATGACCTCG
CGCTATCTGGGGCTAGTGGTAGTTCCTGGCCAGCACGTTGTCAGGTTGGAGTTGGAGCAGTTTGCGAGTCAAATT
AGCGACTAG
Transcript >OphauB2|4422
ATGGCTCAGCTCGAGGCACGCAGCTACCTCGAATCTCTGCTGAATCAGAACCTCCGCGTCCACACTACTGATGGG
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGACATGAATGTCGTTTTGGCCAATACTTACGAGTACCGG
CAACCCTCTATACGTTCACTGCGCCGCCAAATGGCCGAGACGGGGGCGTCCTCGGTCAAGGCGGATATGACCTCG
CGCTATCTGGGGCTAGTGGTAGTTCCTGGCCAGCACGTTGTCAGGTTGGAGTTGGAGCAGTTTGCGAGTCAAATT
AGCGACTAG
Gene >OphauB2|4422
ATGGCTCAGCTCGAGGCACGCAGCTACCTCGAATCTCTGCTGAATCAGAACCTCCGCGTCCACACTACTGATGGG
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGTTCGTCTCACGAAGCCCCTTGGACCCCCTTCCCTTCCT
CACATTTAGCATGTTCATCCTCTTGCCCTCGCGTCCGACTCTTCCGACTGACGCTGACTCGTTCATGCAAACAAT
TTTTTTACAAATTGCCAGGACATGAATGTCGTTTTGGCCAATACTTACGAGTACCGGCAACCCTCTATACGTTCA
CTGCGCCGCCAAATGGCCGAGACGGGGGCGTCCTCGGTCAAGGCGGATATGACCTCGCGCTATCTGGGGCTAGTG
GTAGTTCCTGGCCAGCACGTTGTCAGGTTGGAGTTGGAGCAGTTTGCGAGTCAAATTAGCGACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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