Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4361
Gene name
LocationContig_292:8100..8812
Strand+
Gene length (bp)712
Transcript length (bp)651
Coding sequence length (bp)651
Protein length (aa) 217

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04051 TRAPP Transport protein particle (TRAPP) component 7.5E-44 46 202

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1 11 214 2.0E-58
sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1 27 211 7.0E-55
sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1 23 213 7.0E-45
sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1 23 213 2.0E-41
sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1 23 213 3.0E-41
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1 11 214 2.0E-58
sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1 27 211 7.0E-55
sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1 23 213 7.0E-45
sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1 23 213 2.0E-41
sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1 23 213 3.0E-41
sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1 23 213 4.0E-41
sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1 25 210 5.0E-39
sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1 25 210 5.0E-39
sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1 97 210 1.0E-15
sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1 40 202 2.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4361
MANPQPAGAPSSSSKEHGLRVPTSGKTIYHRPLNRTKTAELSHASFAYLFSEMVTYAQRRVKGIQELEQRLNCQG
YPIGIKLLDLLLYREPARTQLRPLTIITLLHFIKQNVWQHLFGRQADRLEKSNNPDTPEEYMIIDNEPLVNRYIS
VPREMSQLNCAAYVAGIVEGVCDGADFAARVTAHTVGEGDMWPGKTVFLVKFRPEVMERESFLGKG*
Coding >OphauB2|4361
ATGGCCAATCCGCAGCCCGCGGGCGCCCCGTCAAGCAGCTCCAAGGAGCACGGGCTGCGCGTGCCCACCAGCGGA
AAGACAATCTACCACCGCCCTCTAAACCGCACCAAGACGGCCGAGCTTAGCCATGCGAGCTTTGCCTATCTCTTT
AGCGAAATGGTGACGTATGCCCAGCGGCGCGTCAAGGGCATCCAGGAGCTGGAGCAGCGGCTCAACTGCCAAGGC
TATCCCATTGGCATCAAACTCCTCGATCTCCTCCTCTACCGCGAGCCGGCACGCACGCAGCTGCGTCCGCTAACC
ATTATCACGCTGCTACACTTTATCAAGCAAAACGTCTGGCAACACCTCTTTGGCCGGCAGGCTGACCGGCTGGAA
AAGTCAAACAACCCAGACACGCCCGAAGAGTACATGATTATCGACAATGAGCCGCTGGTGAACCGCTACATTAGC
GTGCCGCGCGAAATGAGCCAGCTCAACTGCGCCGCCTATGTGGCGGGCATTGTCGAGGGTGTGTGTGACGGAGCA
GACTTTGCGGCGCGCGTCACGGCGCACACGGTTGGCGAGGGCGACATGTGGCCGGGCAAGACGGTCTTTCTCGTC
AAGTTTAGGCCCGAGGTGATGGAGAGGGAGAGTTTTCTGGGCAAGGGCTAG
Transcript >OphauB2|4361
ATGGCCAATCCGCAGCCCGCGGGCGCCCCGTCAAGCAGCTCCAAGGAGCACGGGCTGCGCGTGCCCACCAGCGGA
AAGACAATCTACCACCGCCCTCTAAACCGCACCAAGACGGCCGAGCTTAGCCATGCGAGCTTTGCCTATCTCTTT
AGCGAAATGGTGACGTATGCCCAGCGGCGCGTCAAGGGCATCCAGGAGCTGGAGCAGCGGCTCAACTGCCAAGGC
TATCCCATTGGCATCAAACTCCTCGATCTCCTCCTCTACCGCGAGCCGGCACGCACGCAGCTGCGTCCGCTAACC
ATTATCACGCTGCTACACTTTATCAAGCAAAACGTCTGGCAACACCTCTTTGGCCGGCAGGCTGACCGGCTGGAA
AAGTCAAACAACCCAGACACGCCCGAAGAGTACATGATTATCGACAATGAGCCGCTGGTGAACCGCTACATTAGC
GTGCCGCGCGAAATGAGCCAGCTCAACTGCGCCGCCTATGTGGCGGGCATTGTCGAGGGTGTGTGTGACGGAGCA
GACTTTGCGGCGCGCGTCACGGCGCACACGGTTGGCGAGGGCGACATGTGGCCGGGCAAGACGGTCTTTCTCGTC
AAGTTTAGGCCCGAGGTGATGGAGAGGGAGAGTTTTCTGGGCAAGGGCTAG
Gene >OphauB2|4361
ATGGCCAATCCGCAGCCCGCGGGCGCCCCGTCAAGCAGCTCCAAGGAGCACGGGCTGCGCGTGCCCACCAGCGGA
AAGACAATCTACCACCGCCCTCTAAACCGCACCAAGACGGCCGAGCTTAGCCATGCGAGCTTTGCCTATCTCTTT
AGCGAAATGGTGACGTATGCCCAGCGGCGCGTCAAGGGCATCCAGGAGCTGGAGCAGCGGTAAAGCACCAGAGGC
CGCACCTTGTAGTAGTGGGCGCTAACCGTCTTTTTTTCTTGAAAGGCTCAACTGCCAAGGCTATCCCATTGGCAT
CAAACTCCTCGATCTCCTCCTCTACCGCGAGCCGGCACGCACGCAGCTGCGTCCGCTAACCATTATCACGCTGCT
ACACTTTATCAAGCAAAACGTCTGGCAACACCTCTTTGGCCGGCAGGCTGACCGGCTGGAAAAGTCAAACAACCC
AGACACGCCCGAAGAGTACATGATTATCGACAATGAGCCGCTGGTGAACCGCTACATTAGCGTGCCGCGCGAAAT
GAGCCAGCTCAACTGCGCCGCCTATGTGGCGGGCATTGTCGAGGGTGTGTGTGACGGAGCAGACTTTGCGGCGCG
CGTCACGGCGCACACGGTTGGCGAGGGCGACATGTGGCCGGGCAAGACGGTCTTTCTCGTCAAGTTTAGGCCCGA
GGTGATGGAGAGGGAGAGTTTTCTGGGCAAGGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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