Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4332
Gene name
LocationContig_29:116370..117086
Strand+
Gene length (bp)716
Transcript length (bp)351
Coding sequence length (bp)351
Protein length (aa) 117

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-18 16 82

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q8ITY4|SF3B6_CAEEL Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 3 115 7.0E-41
sp|O59670|SF3B6_SCHPO Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 11 115 7.0E-39
sp|Q9VRV7|SF3B6_DROME Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1 7 115 2.0E-38
sp|P59708|SF3B6_MOUSE Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 7 116 3.0E-38
sp|Q9Y3B4|SF3B6_HUMAN Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 7 116 3.0E-38
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Swissprot ID Swissprot Description Start End E-value
sp|Q8ITY4|SF3B6_CAEEL Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 3 115 7.0E-41
sp|O59670|SF3B6_SCHPO Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 11 115 7.0E-39
sp|Q9VRV7|SF3B6_DROME Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1 7 115 2.0E-38
sp|P59708|SF3B6_MOUSE Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 7 116 3.0E-38
sp|Q9Y3B4|SF3B6_HUMAN Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 7 116 3.0E-38
sp|Q9FMP4|SF3B6_ARATH Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1 7 115 2.0E-37
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 1 104 3.0E-10
sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1 15 84 9.0E-09
sp|F4JHI7|SR34B_ARATH Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1 8 84 2.0E-08
sp|O22315|SR34_ARATH Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1 1 87 1.0E-07
sp|Q8L3X8|SRC30_ARATH Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1 16 96 1.0E-07
sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=TIF35 PE=3 SV=2 5 86 3.0E-07
sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 16 115 3.0E-07
sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 16 90 3.0E-07
sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 16 90 3.0E-07
sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 16 90 3.0E-07
sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrd1 PE=3 SV=1 4 85 3.0E-07
sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 16 90 3.0E-07
sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPL3 PE=1 SV=1 13 86 4.0E-07
sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1 16 85 5.0E-07
sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2 PE=3 SV=1 4 86 5.0E-07
sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tif35 PE=3 SV=1 16 86 5.0E-07
sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 1 84 6.0E-07
sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 1 84 6.0E-07
sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 1 84 6.0E-07
sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 1 84 6.0E-07
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 2 109 7.0E-07
sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1 3 89 7.0E-07
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3 16 85 8.0E-07
sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3 16 90 1.0E-06
sp|Q2U002|EIF3G_ASPOR Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tif35 PE=3 SV=1 5 86 1.0E-06
sp|Q0CPF9|EIF3G_ASPTN Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1 16 86 1.0E-06
sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 16 90 1.0E-06
sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1 16 90 1.0E-06
sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2 16 90 1.0E-06
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1 16 116 1.0E-06
sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 16 90 1.0E-06
sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1 16 90 1.0E-06
sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1 16 90 2.0E-06
sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 6 89 2.0E-06
sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=1 SV=1 21 90 2.0E-06
sp|Q96IZ5|RBM41_HUMAN RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2 11 101 2.0E-06
sp|B0XS28|EIF3G_ASPFC Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1 16 86 3.0E-06
sp|Q4X1I3|EIF3G_ASPFU Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tif35 PE=3 SV=1 16 86 3.0E-06
sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mrd1 PE=3 SV=1 12 94 3.0E-06
sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1 5 86 3.0E-06
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 16 108 3.0E-06
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 16 108 3.0E-06
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 16 108 3.0E-06
sp|A1DGS2|EIF3G_NEOFI Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1 16 86 3.0E-06
sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1 5 88 4.0E-06
sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1 5 88 4.0E-06
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 10 84 6.0E-06
sp|A1C646|EIF3G_ASPCL Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=tif35 PE=3 SV=1 16 86 6.0E-06
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 10 84 6.0E-06
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 16 84 6.0E-06
sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20 PE=3 SV=3 12 86 6.0E-06
sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1 12 90 6.0E-06
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 10 84 7.0E-06
sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRD1 PE=3 SV=2 18 90 7.0E-06
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 10 101 8.0E-06
sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 5 86 8.0E-06
sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 5 86 8.0E-06
sp|A2R7Z2|EIF3G_ASPNC Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3 SV=1 16 88 8.0E-06
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 16 108 1.0E-05
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4332
MSSRGGKLAPEVNRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGISSTTKGTAFVVYEDVMDAKQACDKLNGF
NFQNRYLVVLYHQPEKMIKSREDLEARRESLAQLKKQHGID*
Coding >OphauB2|4332
ATGAGTAGTCGCGGAGGGAAACTCGCCCCCGAAGTTAACCGAGCTCTGTTCGTCAAGAATTTGAGCTACAACGTC
ACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATCCGCCAAGTGCGCCAGGGCATCTCGAGCACC
ACCAAGGGAACAGCCTTTGTTGTCTATGAGGATGTCATGGATGCCAAGCAAGCTTGTGACAAGCTGAATGGCTTC
AACTTTCAGAATCGCTACCTAGTTGTTCTATACCATCAGCCCGAGAAGATGATCAAGTCGAGAGAAGACCTCGAA
GCCCGCCGCGAGTCTTTAGCCCAGCTCAAGAAGCAGCACGGTATTGATTGA
Transcript >OphauB2|4332
ATGAGTAGTCGCGGAGGGAAACTCGCCCCCGAAGTTAACCGAGCTCTGTTCGTCAAGAATTTGAGCTACAACGTC
ACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATCCGCCAAGTGCGCCAGGGCATCTCGAGCACC
ACCAAGGGAACAGCCTTTGTTGTCTATGAGGATGTCATGGATGCCAAGCAAGCTTGTGACAAGCTGAATGGCTTC
AACTTTCAGAATCGCTACCTAGTTGTTCTATACCATCAGCCCGAGAAGATGATCAAGTCGAGAGAAGACCTCGAA
GCCCGCCGCGAGTCTTTAGCCCAGCTCAAGAAGCAGCACGGTATTGATTGA
Gene >OphauB2|4332
ATGAGTAGTCGCGGAGGGAAACTCGCCCCCGAAGTTAACCGGTCAGTCGCCTCTTCTGCTCTTGTTTTGCACAAA
TGCCACTGCCCCTGCTGCTGCGACTGTCATCGGTGTGGATGCGTGGCGCAACACCCCCGACCTTGGAATCGTGTT
TCCCCCACCAGTTTCTTCCCCGATGCACTATGTGGCGGACTTGCCAGGCTAATCATGTTGACAGAGCTCTGTTCG
TCAAGAATTTGAGGTGTGCCTCACCGTGATTGCATTCGATTGGCTCCAAACTGACTTGTCTCCCCTCCATTTCAG
CTACAACGTCACACCCGAAGAGCTCTTTGATCTCTTTGGCAAGTTTGGCCCAATCCGGTAAATTCCCTCAAGGAA
CCCATGGCTACCTTGACGACTTGCTAACTCTACGTCTTAGCCAAGTGCGCCAGGGCATCTCGAGCACCACCAAGG
GAACAGCCTTTGTTGTCTATGAGGATGTCATGGATGCCAAGCAAGCTTGTGACAAGCTGAATGGCTTCAACTTTC
AGAATCGCTACCTAGTTGGTATGCAGTCTTGTGCCCAAGCCATCTTTTGCATGCCGCGCCGCCCACCACTAGTCT
GACGTGTCGCATTAGTTCTATACCATCAGCCCGAGAAGATGATCAAGTCGAGAGAAGACCTCGAAGCCCGCCGCG
AGTCTTTAGCCCAGCTCAAGAAGCAGCACGGTATTGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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