Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4242
Gene name
LocationContig_28:145198..145784
Strand+
Gene length (bp)586
Transcript length (bp)387
Coding sequence length (bp)387
Protein length (aa) 129

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 5.4E-15 6 69

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 1 116 3.0E-38
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 1 116 3.0E-38
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 1 86 6.0E-38
sp|F4K4E3|LSM4_ARATH Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 1 83 3.0E-36
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 1 81 7.0E-34
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Swissprot ID Swissprot Description Start End E-value
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 1 116 3.0E-38
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 1 116 3.0E-38
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 1 86 6.0E-38
sp|F4K4E3|LSM4_ARATH Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 1 83 3.0E-36
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 1 81 7.0E-34
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm4 PE=1 SV=1 1 86 9.0E-34
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1 1 81 1.0E-33
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1 1 81 1.0E-33
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1 1 122 3.0E-33
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4 OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1 1 79 2.0E-30
sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1 SV=1 1 81 7.0E-15
sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1 2 75 1.0E-10
sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1 2 75 3.0E-09
sp|Q9S7E6|SMD3A_ARATH Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1 2 128 2.0E-08
sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1 2 95 3.0E-07
sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1 2 95 3.0E-07
sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1 2 95 3.0E-07
sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans GN=snr-1 PE=2 SV=2 2 118 5.0E-07
sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1 2 75 7.0E-07
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GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

Gene cluster ID Type of secondary metabolism gene
Cluster 21 (None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5331
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6437
Ophiocordyceps australis map64 (Brazil) OphauB2|4242 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|04209
Ophiocordyceps camponoti-rufipedis Ophun1|2241
Ophiocordyceps kimflemingae Ophio5|8011
Ophiocordyceps subramaniannii Hirsu2|5045

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4242
MLPLTLLNAAQGHPMLVELKSGETLNGHLVMCDTWMNLTLKEVVQTSAEGDQFTKMKEAYVKGNNIKYLRFPEEL
ISKVSESQKSQHSGFRGGRGGQSRGDHHGGARGGDRGRGRGGGRGRGARGRAQ*
Coding >OphauB2|4242
ATGCTGCCCCTCACCCTCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTA
AACGGCCACCTCGTCATGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGAAGGC
GACCAATTCACAAAGATGAAGGAGGCCTATGTCAAAGGCAACAATATCAAGTACCTTCGCTTTCCAGAAGAGCTC
ATCAGCAAGGTTAGCGAGTCTCAAAAAAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGC
GACCACCATGGAGGTGCCCGTGGCGGCGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGC
CGAGCCCAATAA
Transcript >OphauB2|4242
ATGCTGCCCCTCACCCTCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTA
AACGGCCACCTCGTCATGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGAAGGC
GACCAATTCACAAAGATGAAGGAGGCCTATGTCAAAGGCAACAATATCAAGTACCTTCGCTTTCCAGAAGAGCTC
ATCAGCAAGGTTAGCGAGTCTCAAAAAAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGC
GACCACCATGGAGGTGCCCGTGGCGGCGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGC
CGAGCCCAATAA
Gene >OphauB2|4242
ATGGCACGTATATTCTCCCCGGTTTTTTTACGCCCTCAGCCTTGCTAACCCTCATCGTATAGCTGCCCCTCACCC
TCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTAAACGGCCACCTCGTCA
TGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGTATGCTCCCCCCCCCAATACC
AACATTCAACCTTTTTAAAATGAACAAGACCACATGGACTAACCCTTGCTTCAGGAAGGCGACCAATTCACAAAG
ATGAAGGAGGCCTATGTCAAAGGCAACAATGTACCTTGGCGTCCCCCAATCCTCTTAAGAGACTGCCAAGTTTGT
TAACACCCCGCGCGCGCAGATCAAGTACCTTCGCTTTCCAGAAGAGCTCATCAGCAAGGTTAGCGAGTCTCAAAA
AAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGCGACCACCATGGAGGTGCCCGTGGCGG
CGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGCCGAGCCCAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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