Protein ID | OphauB2|4242 |
Gene name | |
Location | Contig_28:145198..145784 |
Strand | + |
Gene length (bp) | 586 |
Transcript length (bp) | 387 |
Coding sequence length (bp) | 387 |
Protein length (aa) | 129 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01423 | LSM | LSM domain | 5.4E-15 | 6 | 69 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9LGE6|LSM4_ORYSJ | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 | 1 | 116 | 3.0E-38 |
sp|Q43582|LSM4_TOBAC | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 | 1 | 116 | 3.0E-38 |
sp|Q9ZRU9|LSM4_FAGSY | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 | 1 | 86 | 6.0E-38 |
sp|F4K4E3|LSM4_ARATH | Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 | 1 | 83 | 3.0E-36 |
sp|Q9QXA5|LSM4_MOUSE | U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 | 1 | 81 | 7.0E-34 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9LGE6|LSM4_ORYSJ | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 | 1 | 116 | 3.0E-38 |
sp|Q43582|LSM4_TOBAC | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 | 1 | 116 | 3.0E-38 |
sp|Q9ZRU9|LSM4_FAGSY | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 | 1 | 86 | 6.0E-38 |
sp|F4K4E3|LSM4_ARATH | Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 | 1 | 83 | 3.0E-36 |
sp|Q9QXA5|LSM4_MOUSE | U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 | 1 | 81 | 7.0E-34 |
sp|O14352|LSM4_SCHPO | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm4 PE=1 SV=1 | 1 | 86 | 9.0E-34 |
sp|Q9Y4Z0|LSM4_HUMAN | U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1 | 1 | 81 | 1.0E-33 |
sp|Q3ZBK6|LSM4_BOVIN | U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1 | 1 | 81 | 1.0E-33 |
sp|Q54KX4|LSM4_DICDI | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1 | 1 | 122 | 3.0E-33 |
sp|Q19952|LSM4_CAEEL | Probable U6 snRNA-associated Sm-like protein LSm4 OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1 | 1 | 79 | 2.0E-30 |
sp|P40070|LSM4_YEAST | U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1 SV=1 | 1 | 81 | 7.0E-15 |
sp|P43321|SMD3_YEAST | Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1 | 2 | 75 | 1.0E-10 |
sp|Q9LM92|SMD3B_ARATH | Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1 | 2 | 75 | 3.0E-09 |
sp|Q9S7E6|SMD3A_ARATH | Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1 | 2 | 128 | 2.0E-08 |
sp|P62323|SMD3_XENLA | Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1 | 2 | 95 | 3.0E-07 |
sp|P62320|SMD3_MOUSE | Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1 | 2 | 95 | 3.0E-07 |
sp|P62318|SMD3_HUMAN | Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1 | 2 | 95 | 3.0E-07 |
sp|Q17348|SMD3_CAEEL | Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans GN=snr-1 PE=2 SV=2 | 2 | 118 | 5.0E-07 |
sp|Q9UUC6|SMD3_SCHPO | Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1 | 2 | 75 | 7.0E-07 |
Gene cluster ID | Type of secondary metabolism gene |
---|---|
Cluster 21 | (None) |
Orthofinder run ID | 4 |
Orthogroup | 5331 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauB2|4242 MLPLTLLNAAQGHPMLVELKSGETLNGHLVMCDTWMNLTLKEVVQTSAEGDQFTKMKEAYVKGNNIKYLRFPEEL ISKVSESQKSQHSGFRGGRGGQSRGDHHGGARGGDRGRGRGGGRGRGARGRAQ* |
Coding | >OphauB2|4242 ATGCTGCCCCTCACCCTCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTA AACGGCCACCTCGTCATGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGAAGGC GACCAATTCACAAAGATGAAGGAGGCCTATGTCAAAGGCAACAATATCAAGTACCTTCGCTTTCCAGAAGAGCTC ATCAGCAAGGTTAGCGAGTCTCAAAAAAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGC GACCACCATGGAGGTGCCCGTGGCGGCGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGC CGAGCCCAATAA |
Transcript | >OphauB2|4242 ATGCTGCCCCTCACCCTCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTA AACGGCCACCTCGTCATGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGAAGGC GACCAATTCACAAAGATGAAGGAGGCCTATGTCAAAGGCAACAATATCAAGTACCTTCGCTTTCCAGAAGAGCTC ATCAGCAAGGTTAGCGAGTCTCAAAAAAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGC GACCACCATGGAGGTGCCCGTGGCGGCGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGC CGAGCCCAATAA |
Gene | >OphauB2|4242 ATGGCACGTATATTCTCCCCGGTTTTTTTACGCCCTCAGCCTTGCTAACCCTCATCGTATAGCTGCCCCTCACCC TCCTCAACGCCGCACAAGGCCACCCCATGCTCGTCGAGCTCAAGAGCGGCGAGACACTAAACGGCCACCTCGTCA TGTGCGATACCTGGATGAATCTCACTCTCAAGGAAGTCGTGCAAACAAGCGCTGTATGCTCCCCCCCCCAATACC AACATTCAACCTTTTTAAAATGAACAAGACCACATGGACTAACCCTTGCTTCAGGAAGGCGACCAATTCACAAAG ATGAAGGAGGCCTATGTCAAAGGCAACAATGTACCTTGGCGTCCCCCAATCCTCTTAAGAGACTGCCAAGTTTGT TAACACCCCGCGCGCGCAGATCAAGTACCTTCGCTTTCCAGAAGAGCTCATCAGCAAGGTTAGCGAGTCTCAAAA AAGTCAACACTCGGGCTTCAGAGGCGGCCGCGGTGGCCAATCAAGAGGCGACCACCATGGAGGTGCCCGTGGCGG CGACAGAGGCCGAGGAAGAGGCGGAGGCCGTGGCCGCGGCGCAAGAGGCCGAGCCCAATAA |