© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4187 |
| Gene name | |
| Location | Contig_279:6557..8169 |
| Strand | + |
| Gene length (bp) | 1612 |
| Transcript length (bp) | 1449 |
| Coding sequence length (bp) | 1449 |
| Protein length (aa) | 483 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03348 | Serinc | Serine incorporator (Serinc) | 1.7E-171 | 23 | 478 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 480 | 5.0E-142 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 479 | 3.0E-106 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 15 | 478 | 1.0E-81 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 9 | 478 | 6.0E-74 |
| sp|Q13530|SERC3_HUMAN | Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 | 9 | 478 | 1.0E-72 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 480 | 5.0E-142 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 479 | 3.0E-106 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 15 | 478 | 1.0E-81 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 9 | 478 | 6.0E-74 |
| sp|Q13530|SERC3_HUMAN | Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 | 9 | 478 | 1.0E-72 |
| sp|Q9QZI8|SERC1_MOUSE | Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 | 9 | 480 | 7.0E-71 |
| sp|Q7TNK0|SERC1_RAT | Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1 | 9 | 480 | 2.0E-70 |
| sp|Q5R419|SERC1_PONAB | Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1 | 9 | 480 | 4.0E-67 |
| sp|Q3MHV9|SERC1_BOVIN | Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1 | 9 | 480 | 6.0E-67 |
| sp|Q9NRX5|SERC1_HUMAN | Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1 | 9 | 480 | 8.0E-67 |
| sp|A4FUZ5|SERC3_BOVIN | Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1 | 9 | 478 | 1.0E-66 |
| sp|Q9QZI9|SERC3_MOUSE | Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2 | 9 | 478 | 8.0E-55 |
| sp|A9UY97|SERIC_MONBE | Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1 | 23 | 478 | 8.0E-54 |
| sp|Q96SA4|SERC2_HUMAN | Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=3 | 17 | 478 | 5.0E-49 |
| sp|Q54UF8|SERIC_DICDI | Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1 | 43 | 428 | 9.0E-48 |
| sp|Q8K0E7|SERC2_MOUSE | Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1 | 17 | 478 | 1.0E-47 |
| sp|Q803X0|SERC5_DANRE | Serine incorporator 5 OS=Danio rerio GN=serinc5 PE=2 SV=1 | 23 | 480 | 2.0E-46 |
| sp|Q8BHJ6|SERC5_MOUSE | Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1 | 23 | 478 | 9.0E-46 |
| sp|Q58CW5|SERC2_BOVIN | Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1 | 17 | 478 | 3.0E-42 |
| sp|Q63175|SERC5_RAT | Serine incorporator 5 OS=Rattus norvegicus GN=Serinc5 PE=2 SV=1 | 23 | 478 | 9.0E-40 |
| sp|Q86VE9|SERC5_HUMAN | Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1 | 23 | 437 | 3.0E-39 |
| sp|Q4R6L9|SERC5_MACFA | Serine incorporator 5 OS=Macaca fascicularis GN=SERINC5 PE=2 SV=1 | 51 | 478 | 2.0E-37 |
| sp|A6NH21|SERC4_HUMAN | Serine incorporator 4 OS=Homo sapiens GN=SERINC4 PE=2 SV=1 | 21 | 461 | 6.0E-32 |
| sp|Q5XK03|SERC4_MOUSE | Serine incorporator 4 OS=Mus musculus GN=Serinc4 PE=2 SV=1 | 23 | 461 | 4.0E-29 |
| sp|A8WCG0|SERC4_RAT | Serine incorporator 4 OS=Rattus norvegicus GN=Serinc4 PE=2 SV=2 | 24 | 461 | 1.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 132 | 151 | 19 |
| 5 | 161 | 183 | 22 |
| 6 | 204 | 226 | 22 |
| 7 | 236 | 258 | 22 |
| 8 | 265 | 287 | 22 |
| 9 | 302 | 321 | 19 |
| 10 | 407 | 429 | 22 |
| 11 | 449 | 471 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4187 MGALLSLPLLAVPSMGAIISCAASCCGAATCSMVCSACGKCGNSVATRIAYALMLLVNSIVAWIMLTPWAIEKLQ HLMLDYVRINCPTGQCYGWLAVHRINFALGLLHIILAGLLFGVSSSKNPRAAIQNGYWGPKIIAWIALIVVAFLI PDQFFLFYGNYISLVCAMLFLILGLVLLVDLAHNWAEYCLAQIDNSDSRLWRFILIGSTLSMYLASIAMTVVQYV FFAGPHCSMNQAVITINLLLWIAISLASVNPTVQEHNPRAGLAQAAMVAVYCTYLTMSAVSMEPDDKRCNPLIRA QGTRTTSVILGAVVTMLTVAYTTTRAATQSLGLGSKHGSIRLPDDDDVADEHGLVTQQPSSRREMRAEALRRAVE QGSLPANALLSDDSDSEHDAPSQDDERSSTQYNYSMFHIIFFLATTWVATLLTLNYDDSVKSDGGFATVGRTYAA SWLKIASAWVCHALYIWSLAAPVIYPDRFDLS* |
| Coding | >OphauB2|4187 ATGGGCGCCCTACTATCGCTGCCTCTGCTCGCAGTACCCAGCATGGGTGCGATTATTTCGTGTGCTGCCAGTTGT TGCGGCGCGGCTACATGTTCCATGGTGTGCAGCGCCTGTGGGAAATGCGGCAACAGTGTCGCCACTCGCATCGCC TACGCCTTGATGCTTCTTGTCAACTCGATTGTTGCTTGGATCATGCTCACGCCGTGGGCTATTGAAAAACTGCAG CATCTTATGCTCGACTATGTCCGCATCAACTGTCCGACGGGCCAGTGCTATGGCTGGCTTGCCGTGCATCGCATC AACTTTGCCCTCGGCCTCTTACACATTATACTCGCCGGGCTGCTCTTTGGCGTCTCGTCGTCAAAGAACCCACGC GCTGCTATTCAAAACGGCTACTGGGGTCCCAAAATTATTGCCTGGATTGCGCTTATTGTCGTCGCCTTTCTTATT CCCGATCAGTTTTTCCTCTTTTACGGCAACTACATTTCTCTGGTTTGCGCCATGCTCTTTCTCATTCTCGGCCTC GTGCTCCTTGTCGACCTGGCTCACAACTGGGCGGAATACTGCCTTGCCCAGATTGACAACTCAGACTCGAGACTA TGGCGCTTCATCCTTATTGGGTCCACGCTCTCCATGTACCTGGCATCCATCGCCATGACGGTGGTTCAGTACGTC TTCTTTGCCGGGCCTCATTGCTCGATGAATCAAGCCGTCATTACCATTAATTTGCTGCTCTGGATCGCCATTTCA CTGGCGTCGGTCAACCCAACGGTTCAAGAGCACAACCCCCGTGCTGGCTTGGCCCAAGCCGCCATGGTTGCCGTC TACTGCACCTATCTCACCATGTCGGCCGTGTCGATGGAGCCTGATGATAAGCGGTGTAATCCTCTTATCCGCGCT CAAGGCACCCGCACCACGTCGGTCATTCTTGGCGCCGTGGTGACCATGCTGACTGTGGCTTACACGACGACTCGC GCCGCTACACAGAGCCTGGGGCTGGGCTCCAAGCATGGGTCCATTCGTCTGCCCGATGACGACGACGTTGCCGAC GAGCATGGCCTCGTTACACAGCAGCCCAGCAGTCGGCGTGAGATGCGGGCCGAAGCGCTGCGACGTGCCGTTGAG CAAGGCAGCTTGCCTGCCAATGCTCTCTTGTCGGATGACTCTGATTCGGAGCACGACGCTCCCTCCCAGGACGAT GAGCGATCCAGTACTCAGTACAATTACTCCATGTTTCACATCATCTTCTTCTTGGCCACCACGTGGGTCGCCACT CTCTTGACCTTGAATTACGACGATTCTGTAAAGTCTGACGGCGGCTTTGCTACTGTTGGCCGCACCTACGCCGCC AGCTGGCTAAAAATTGCAAGTGCTTGGGTCTGTCATGCTCTCTACATTTGGAGTCTAGCTGCCCCTGTCATCTAT CCCGATCGTTTTGACCTTTCTTGA |
| Transcript | >OphauB2|4187 ATGGGCGCCCTACTATCGCTGCCTCTGCTCGCAGTACCCAGCATGGGTGCGATTATTTCGTGTGCTGCCAGTTGT TGCGGCGCGGCTACATGTTCCATGGTGTGCAGCGCCTGTGGGAAATGCGGCAACAGTGTCGCCACTCGCATCGCC TACGCCTTGATGCTTCTTGTCAACTCGATTGTTGCTTGGATCATGCTCACGCCGTGGGCTATTGAAAAACTGCAG CATCTTATGCTCGACTATGTCCGCATCAACTGTCCGACGGGCCAGTGCTATGGCTGGCTTGCCGTGCATCGCATC AACTTTGCCCTCGGCCTCTTACACATTATACTCGCCGGGCTGCTCTTTGGCGTCTCGTCGTCAAAGAACCCACGC GCTGCTATTCAAAACGGCTACTGGGGTCCCAAAATTATTGCCTGGATTGCGCTTATTGTCGTCGCCTTTCTTATT CCCGATCAGTTTTTCCTCTTTTACGGCAACTACATTTCTCTGGTTTGCGCCATGCTCTTTCTCATTCTCGGCCTC GTGCTCCTTGTCGACCTGGCTCACAACTGGGCGGAATACTGCCTTGCCCAGATTGACAACTCAGACTCGAGACTA TGGCGCTTCATCCTTATTGGGTCCACGCTCTCCATGTACCTGGCATCCATCGCCATGACGGTGGTTCAGTACGTC TTCTTTGCCGGGCCTCATTGCTCGATGAATCAAGCCGTCATTACCATTAATTTGCTGCTCTGGATCGCCATTTCA CTGGCGTCGGTCAACCCAACGGTTCAAGAGCACAACCCCCGTGCTGGCTTGGCCCAAGCCGCCATGGTTGCCGTC TACTGCACCTATCTCACCATGTCGGCCGTGTCGATGGAGCCTGATGATAAGCGGTGTAATCCTCTTATCCGCGCT CAAGGCACCCGCACCACGTCGGTCATTCTTGGCGCCGTGGTGACCATGCTGACTGTGGCTTACACGACGACTCGC GCCGCTACACAGAGCCTGGGGCTGGGCTCCAAGCATGGGTCCATTCGTCTGCCCGATGACGACGACGTTGCCGAC GAGCATGGCCTCGTTACACAGCAGCCCAGCAGTCGGCGTGAGATGCGGGCCGAAGCGCTGCGACGTGCCGTTGAG CAAGGCAGCTTGCCTGCCAATGCTCTCTTGTCGGATGACTCTGATTCGGAGCACGACGCTCCCTCCCAGGACGAT GAGCGATCCAGTACTCAGTACAATTACTCCATGTTTCACATCATCTTCTTCTTGGCCACCACGTGGGTCGCCACT CTCTTGACCTTGAATTACGACGATTCTGTAAAGTCTGACGGCGGCTTTGCTACTGTTGGCCGCACCTACGCCGCC AGCTGGCTAAAAATTGCAAGTGCTTGGGTCTGTCATGCTCTCTACATTTGGAGTCTAGCTGCCCCTGTCATCTAT CCCGATCGTTTTGACCTTTCTTGA |
| Gene | >OphauB2|4187 ATGGGCGCCCTACTATCGCTGCCTCTGCTCGCAGTACCCAGCATGGGTGCGGTACGTTGCTCAGACCGGACGCCG ACGAAACCAAGCTCGCGATTTTATTTTTTTTGGGGGTTCGCCTTTGGCTGACTAGGCGTGTTGCTTTGGTAGATT ATTTCGTGTGCTGCCAGTTGTTGCGGCGCGGCTACATGTTCCATGGTGTGCAGCGCCTGTGGGAAATGCGGCAAC AGGCACGTTTATGTATTCTTGGTGGCGGTGGGCAAGGGGTTTCGGGCATGGTAGCTGACGGGTTTATAGTGTCGC CACTCGCATCGCCTACGCCTTGATGCTTCTTGTCAACTCGATTGTTGCTTGGATCATGCTCACGCCGTGGGCTAT TGAAAAACTGCAGCATCTTATGCTCGACTATGTCCGCATCAACTGTCCGACGGGCCAGTGCTATGGCTGGCTTGC CGTGCATCGCATCAACTTTGCCCTCGGCCTCTTACACATTATACTCGCCGGGCTGCTCTTTGGCGTCTCGTCGTC AAAGAACCCACGCGCTGCTATTCAAAACGGCTACTGGGGTCCCAAAATTATTGCCTGGATTGCGCTTATTGTCGT CGCCTTTCTTATTCCCGATCAGTTTTTCCTCTTTTACGGCAACTACATTTCTCTGGTTTGCGCCATGCTCTTTCT CATTCTCGGCCTCGTGCTCCTTGTCGACCTGGCTCACAACTGGGCGGAATACTGCCTTGCCCAGATTGACAACTC AGACTCGAGACTATGGCGCTTCATCCTTATTGGGTCCACGCTCTCCATGTACCTGGCATCCATCGCCATGACGGT GGTTCAGTACGTCTTCTTTGCCGGGCCTCATTGCTCGATGAATCAAGCCGTCATTACCATTAATTTGCTGCTCTG GATCGCCATTTCACTGGCGTCGGTCAACCCAACGGTTCAAGAGCACAACCCCCGTGCTGGCTTGGCCCAAGCCGC CATGGTTGCCGTCTACTGCACCTATCTCACCATGTCGGCCGTGTCGATGGAGCCTGATGATAAGCGGTGTAATCC TCTTATCCGCGCTCAAGGCACCCGCACCACGTCGGTCATTCTTGGCGCCGTGGTGACCATGCTGACTGTGGCTTA CACGACGACTCGCGCCGCTACACAGAGCCTGGGGCTGGGCTCCAAGCATGGGTCCATTCGTCTGCCCGATGACGA CGACGTTGCCGACGAGCATGGCCTCGTTACACAGCAGCCCAGCAGTCGGCGTGAGATGCGGGCCGAAGCGCTGCG ACGTGCCGTTGAGCAAGGCAGCTTGCCTGCCAATGCTCTCTTGTCGGATGACTCTGATTCGGAGCACGACGCTCC CTCCCAGGACGATGAGCGATCCAGTACTCAGTACAATTACTCCATGTTTCACATCATCTTCTTCTTGGCCACCAC GTGGGTCGCCACTCTCTTGACCTTGAATTACGACGATTCTGTAAAGTCTGACGGCGGCTTTGCTACTGTTGGCCG CACCTACGCCGCCAGCTGGCTAAAAATTGCAAGTGCTTGGGTCTGTCATGCTCTCTACATTTGGAGTCTAGCTGC CCCTGTCATCTATCCCGATCGTTTTGACCTTTCTTGA |