© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|4180 |
| Gene name | |
| Location | Contig_277:1559..3005 |
| Strand | - |
| Gene length (bp) | 1446 |
| Transcript length (bp) | 1446 |
| Coding sequence length (bp) | 1446 |
| Protein length (aa) | 482 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.1E-17 | 54 | 290 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 18 | 351 | 7.0E-21 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 38 | 239 | 6.0E-17 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 59 | 250 | 3.0E-16 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 6 | 257 | 1.0E-15 |
| sp|D8MQN9|MDTG_ERWBE | Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | 55 | 203 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 81 | 103 | 22 |
| 2 | 113 | 135 | 22 |
| 3 | 142 | 159 | 17 |
| 4 | 174 | 193 | 19 |
| 5 | 214 | 236 | 22 |
| 6 | 283 | 305 | 22 |
| 7 | 345 | 367 | 22 |
| 8 | 377 | 399 | 22 |
| 9 | 412 | 434 | 22 |
| 10 | 449 | 471 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4180 MKRDPRSTLHHEVGRVASQTTPLLRNDESRGTPAGKPLPTFQILLLCYARLMELIAQYSVYPYIAQMIQRNQHLR QSDVGLYSGLVESIFTVAETAVLALWCYLADHIGRKSALVFSLIGMAVGPVLFGVASSIAEMMLYRCLGGAFSGA GLIIRTMIGDHTTSETQAVAYSWFAMADNLGAFVGLIIGGALADPVTQYPNVFGNVKFFQDYPYALPGIVIGIMN STAAITSTIFLQETLDKKTAETHNHASPDPRAATQPWGFRQLAHIPGLYVALSVYGQVMLLRALIAAVLPVALYT PVFLGGINCTPSQISLYMGSQATSQSFWFLLAFPWLQARMGTKAVLRLCSIGYPLVFMGYILMNLSLREGSHASF AWFWVFTALTAFVGPAVFISLIAAQLVINDLSPDPHLLGSLNALAMMVHNVIQIAAPIFATTMYAVGVRGQVAYG YLGWLVCIPIPLGLFLVVKWLPNSKETSCHG* |
| Coding | >OphauB2|4180 ATGAAACGTGACCCAAGGTCGACATTGCATCACGAGGTCGGCCGTGTGGCCTCCCAAACCACGCCCCTACTGAGA AATGATGAATCTCGCGGCACGCCTGCGGGAAAGCCATTGCCCACATTCCAGATCCTTCTCCTATGCTATGCTCGG CTGATGGAGCTTATTGCGCAGTATTCTGTGTACCCTTATATCGCGCAAATGATTCAGCGCAACCAGCATCTGCGC CAATCCGACGTTGGGCTCTACAGCGGGCTCGTCGAGTCCATCTTCACCGTTGCCGAGACGGCAGTCTTGGCACTC TGGTGCTACCTGGCGGACCACATTGGCCGCAAGTCGGCTCTCGTCTTCAGCCTCATCGGCATGGCAGTTGGACCC GTGTTGTTTGGTGTAGCGAGTAGCATTGCCGAGATGATGTTATACCGATGTCTTGGCGGCGCTTTTTCCGGTGCG GGACTTATTATTCGAACCATGATTGGCGACCATACAACCTCTGAGACGCAAGCTGTGGCCTACAGCTGGTTCGCC ATGGCTGACAACCTGGGCGCCTTTGTGGGGCTGATAATCGGCGGTGCGCTTGCCGATCCTGTTACACAGTACCCC AATGTCTTTGGCAATGTCAAGTTCTTCCAAGACTACCCATATGCCCTCCCTGGTATTGTCATTGGCATCATGAAC TCAACGGCAGCTATTACTTCCACCATCTTTCTCCAAGAGACACTGGACAAGAAGACGGCCGAGACTCACAACCAT GCATCTCCAGATCCACGTGCCGCAACACAGCCATGGGGTTTTCGGCAGCTAGCACATATACCGGGCCTATACGTA GCCCTATCAGTATATGGTCAAGTCATGCTATTGAGGGCCTTGATAGCCGCTGTTCTTCCAGTTGCACTCTATACT CCAGTGTTTCTGGGAGGTATAAACTGTACGCCGTCCCAGATATCGCTATACATGGGGAGCCAGGCCACCAGCCAG TCGTTTTGGTTTCTACTTGCCTTTCCCTGGCTGCAGGCTCGCATGGGAACCAAGGCTGTCTTACGTCTATGTTCT ATTGGCTACCCTCTGGTTTTCATGGGGTATATCCTTATGAATCTGTCTTTGCGTGAGGGAAGTCATGCATCTTTT GCTTGGTTTTGGGTCTTCACGGCACTTACCGCATTTGTTGGACCAGCCGTCTTTATATCCCTCATTGCTGCACAG CTCGTTATTAACGACCTCTCACCGGACCCGCACCTTCTTGGAAGCCTCAATGCTCTGGCCATGATGGTCCACAAC GTTATCCAGATTGCAGCTCCTATTTTTGCAACTACAATGTACGCCGTTGGGGTTCGGGGTCAGGTAGCCTACGGG TACCTTGGCTGGCTAGTTTGCATCCCGATACCTTTGGGCCTCTTTTTAGTCGTCAAGTGGCTTCCAAATAGCAAG GAGACAAGTTGCCACGGATAG |
| Transcript | >OphauB2|4180 ATGAAACGTGACCCAAGGTCGACATTGCATCACGAGGTCGGCCGTGTGGCCTCCCAAACCACGCCCCTACTGAGA AATGATGAATCTCGCGGCACGCCTGCGGGAAAGCCATTGCCCACATTCCAGATCCTTCTCCTATGCTATGCTCGG CTGATGGAGCTTATTGCGCAGTATTCTGTGTACCCTTATATCGCGCAAATGATTCAGCGCAACCAGCATCTGCGC CAATCCGACGTTGGGCTCTACAGCGGGCTCGTCGAGTCCATCTTCACCGTTGCCGAGACGGCAGTCTTGGCACTC TGGTGCTACCTGGCGGACCACATTGGCCGCAAGTCGGCTCTCGTCTTCAGCCTCATCGGCATGGCAGTTGGACCC GTGTTGTTTGGTGTAGCGAGTAGCATTGCCGAGATGATGTTATACCGATGTCTTGGCGGCGCTTTTTCCGGTGCG GGACTTATTATTCGAACCATGATTGGCGACCATACAACCTCTGAGACGCAAGCTGTGGCCTACAGCTGGTTCGCC ATGGCTGACAACCTGGGCGCCTTTGTGGGGCTGATAATCGGCGGTGCGCTTGCCGATCCTGTTACACAGTACCCC AATGTCTTTGGCAATGTCAAGTTCTTCCAAGACTACCCATATGCCCTCCCTGGTATTGTCATTGGCATCATGAAC TCAACGGCAGCTATTACTTCCACCATCTTTCTCCAAGAGACACTGGACAAGAAGACGGCCGAGACTCACAACCAT GCATCTCCAGATCCACGTGCCGCAACACAGCCATGGGGTTTTCGGCAGCTAGCACATATACCGGGCCTATACGTA GCCCTATCAGTATATGGTCAAGTCATGCTATTGAGGGCCTTGATAGCCGCTGTTCTTCCAGTTGCACTCTATACT CCAGTGTTTCTGGGAGGTATAAACTGTACGCCGTCCCAGATATCGCTATACATGGGGAGCCAGGCCACCAGCCAG TCGTTTTGGTTTCTACTTGCCTTTCCCTGGCTGCAGGCTCGCATGGGAACCAAGGCTGTCTTACGTCTATGTTCT ATTGGCTACCCTCTGGTTTTCATGGGGTATATCCTTATGAATCTGTCTTTGCGTGAGGGAAGTCATGCATCTTTT GCTTGGTTTTGGGTCTTCACGGCACTTACCGCATTTGTTGGACCAGCCGTCTTTATATCCCTCATTGCTGCACAG CTCGTTATTAACGACCTCTCACCGGACCCGCACCTTCTTGGAAGCCTCAATGCTCTGGCCATGATGGTCCACAAC GTTATCCAGATTGCAGCTCCTATTTTTGCAACTACAATGTACGCCGTTGGGGTTCGGGGTCAGGTAGCCTACGGG TACCTTGGCTGGCTAGTTTGCATCCCGATACCTTTGGGCCTCTTTTTAGTCGTCAAGTGGCTTCCAAATAGCAAG GAGACAAGTTGCCACGGATAG |
| Gene | >OphauB2|4180 ATGAAACGTGACCCAAGGTCGACATTGCATCACGAGGTCGGCCGTGTGGCCTCCCAAACCACGCCCCTACTGAGA AATGATGAATCTCGCGGCACGCCTGCGGGAAAGCCATTGCCCACATTCCAGATCCTTCTCCTATGCTATGCTCGG CTGATGGAGCTTATTGCGCAGTATTCTGTGTACCCTTATATCGCGCAAATGATTCAGCGCAACCAGCATCTGCGC CAATCCGACGTTGGGCTCTACAGCGGGCTCGTCGAGTCCATCTTCACCGTTGCCGAGACGGCAGTCTTGGCACTC TGGTGCTACCTGGCGGACCACATTGGCCGCAAGTCGGCTCTCGTCTTCAGCCTCATCGGCATGGCAGTTGGACCC GTGTTGTTTGGTGTAGCGAGTAGCATTGCCGAGATGATGTTATACCGATGTCTTGGCGGCGCTTTTTCCGGTGCG GGACTTATTATTCGAACCATGATTGGCGACCATACAACCTCTGAGACGCAAGCTGTGGCCTACAGCTGGTTCGCC ATGGCTGACAACCTGGGCGCCTTTGTGGGGCTGATAATCGGCGGTGCGCTTGCCGATCCTGTTACACAGTACCCC AATGTCTTTGGCAATGTCAAGTTCTTCCAAGACTACCCATATGCCCTCCCTGGTATTGTCATTGGCATCATGAAC TCAACGGCAGCTATTACTTCCACCATCTTTCTCCAAGAGACACTGGACAAGAAGACGGCCGAGACTCACAACCAT GCATCTCCAGATCCACGTGCCGCAACACAGCCATGGGGTTTTCGGCAGCTAGCACATATACCGGGCCTATACGTA GCCCTATCAGTATATGGTCAAGTCATGCTATTGAGGGCCTTGATAGCCGCTGTTCTTCCAGTTGCACTCTATACT CCAGTGTTTCTGGGAGGTATAAACTGTACGCCGTCCCAGATATCGCTATACATGGGGAGCCAGGCCACCAGCCAG TCGTTTTGGTTTCTACTTGCCTTTCCCTGGCTGCAGGCTCGCATGGGAACCAAGGCTGTCTTACGTCTATGTTCT ATTGGCTACCCTCTGGTTTTCATGGGGTATATCCTTATGAATCTGTCTTTGCGTGAGGGAAGTCATGCATCTTTT GCTTGGTTTTGGGTCTTCACGGCACTTACCGCATTTGTTGGACCAGCCGTCTTTATATCCCTCATTGCTGCACAG CTCGTTATTAACGACCTCTCACCGGACCCGCACCTTCTTGGAAGCCTCAATGCTCTGGCCATGATGGTCCACAAC GTTATCCAGATTGCAGCTCCTATTTTTGCAACTACAATGTACGCCGTTGGGGTTCGGGGTCAGGTAGCCTACGGG TACCTTGGCTGGCTAGTTTGCATCCCGATACCTTTGGGCCTCTTTTTAGTCGTCAAGTGGCTTCCAAATAGCAAG GAGACAAGTTGCCACGGATAG |