Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4149
Gene name
LocationContig_27:173174..175051
Strand+
Gene length (bp)1877
Transcript length (bp)1695
Coding sequence length (bp)1695
Protein length (aa) 565

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 7.4E-24 44 159
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-04 435 494

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 29 162 5.0E-40
sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 44 162 2.0E-21
sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 44 162 2.0E-21
sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 44 162 2.0E-21
sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 44 162 8.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 29 162 5.0E-40
sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 44 162 2.0E-21
sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 44 162 2.0E-21
sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 44 162 2.0E-21
sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 44 162 8.0E-20
sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1 44 162 9.0E-20
sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1 44 162 1.0E-19
sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1 44 162 2.0E-19
sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 267 547 2.0E-07
sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NTF2 PE=3 SV=1 42 158 4.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4149
MATNGSFALQDQYKASAEPYGAAATTGDAANAATANSNLSKDEVAWYFVEQYYTTLSKSPEKLHLFYGKRSQFVY
GLEAEIANVAVGRQAIQDRIKLLDFQDCKVRISNVDSQASFDNIVIQVIGETSNKAAEPKKYVQTFVLAQQPSGY
FVLNDILRYIDEGTEEIAEPVPAICAEEQAAVSDAPLPVEDMSSHPVAVCEEANDLDTSVVDQKLEKVSQSDAKV
NGDDAQASTEATKAPETKAAEPAPAPVTDPDVTAQELAEEDAKEPEKPQEPSPTPVSVVKSAPLAQPATQALSEP
AAPQTTAAQAPPPPATSEPALPPKPMTWASRAAAAAGPRPVVPLPKTATPPSQNQSRAPTTAAPSATAAPAPATA
TPQPSTQPPAAAAPASVPAPAADGPKEISGWQTAGADSKRQNRPHSLSGNLTDKDGTMGYVKYVTDKVMEADLRN
ELAAHGELTYFDINRQKNCAFVEYKTIEGYQAAVSKNPHIVNGESIIVEPRRPKATAYGGPNYVGRGNASGRGRG
GFDGNRSSGHGGSRGSFSGQSRGRGGMPRGRGGVQPNII*
Coding >OphauB2|4149
ATGGCAACAAACGGAAGTTTTGCCCTACAGGATCAATATAAAGCGTCTGCCGAGCCCTATGGCGCCGCTGCCACC
ACTGGCGATGCTGCCAATGCCGCAACGGCCAATAGCAACCTATCCAAAGATGAGGTTGCCTGGTACTTTGTTGAG
CAGTACTACACCACGCTCAGCAAATCGCCTGAGAAGCTTCATCTCTTCTATGGCAAGCGCTCCCAGTTCGTCTAT
GGACTAGAGGCTGAAATTGCCAACGTGGCTGTTGGCCGTCAGGCTATCCAGGACCGCATCAAGCTGCTCGATTTC
CAGGACTGCAAGGTCCGCATTTCCAACGTGGACTCTCAAGCGTCGTTCGACAATATTGTCATTCAGGTTATAGGT
GAAACCTCGAACAAGGCTGCCGAGCCCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTAC
TTTGTCCTCAACGACATATTGAGGTACATTGACGAGGGCACTGAAGAAATCGCCGAGCCTGTCCCTGCCATTTGC
GCCGAGGAGCAAGCCGCCGTCTCGGACGCTCCATTGCCTGTCGAGGATATGTCTTCGCATCCAGTCGCCGTTTGC
GAGGAAGCCAATGACTTGGATACCAGTGTTGTAGACCAGAAGCTCGAAAAGGTTAGCCAGAGTGACGCCAAGGTG
AATGGAGACGACGCCCAGGCTAGCACCGAAGCTACCAAGGCGCCTGAGACCAAGGCGGCCGAACCTGCCCCAGCC
CCAGTGACGGATCCCGACGTTACTGCGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGCCTGAGAAGCCTCAGGAA
CCAAGTCCCACTCCTGTCTCGGTGGTCAAGTCTGCTCCCTTGGCTCAGCCGGCGACTCAAGCGCTCTCTGAGCCT
GCTGCTCCCCAGACCACTGCTGCCCAGGCTCCACCTCCTCCCGCTACGTCTGAGCCCGCGCTGCCGCCCAAGCCC
ATGACTTGGGCCAGCCGTGCTGCTGCTGCTGCTGGCCCTCGTCCTGTTGTGCCCTTGCCCAAGACTGCCACGCCT
CCCTCGCAGAATCAAAGTCGCGCTCCCACTACAGCAGCCCCATCAGCTACGGCGGCACCGGCTCCGGCGACTGCT
ACACCCCAGCCCTCTACACAGCCCCCCGCCGCTGCTGCCCCGGCAAGTGTGCCAGCTCCTGCCGCTGATGGTCCC
AAGGAAATCTCTGGTTGGCAGACGGCAGGCGCTGACTCGAAGCGCCAAAATCGGCCACATTCACTGTCGGGCAAC
TTGACCGATAAGGACGGTACCATGGGCTACGTCAAGTATGTGACGGATAAGGTGATGGAGGCTGATCTTCGAAAT
GAGTTGGCTGCTCACGGTGAGCTTACATACTTTGACATCAATCGCCAAAAGAATTGCGCTTTTGTGGAGTATAAG
ACGATTGAGGGGTACCAGGCTGCAGTTTCCAAGAATCCCCATATTGTCAATGGTGAGAGCATCATTGTTGAACCC
CGGCGGCCCAAGGCTACGGCATACGGAGGCCCCAACTACGTTGGTCGAGGTAATGCCTCGGGCCGCGGCAGGGGC
GGCTTCGATGGAAACCGGAGCAGTGGTCATGGAGGCTCACGAGGTAGCTTCTCGGGCCAGAGCCGGGGCCGTGGT
GGAATGCCACGTGGTCGCGGCGGCGTTCAGCCAAACATAATTTAG
Transcript >OphauB2|4149
ATGGCAACAAACGGAAGTTTTGCCCTACAGGATCAATATAAAGCGTCTGCCGAGCCCTATGGCGCCGCTGCCACC
ACTGGCGATGCTGCCAATGCCGCAACGGCCAATAGCAACCTATCCAAAGATGAGGTTGCCTGGTACTTTGTTGAG
CAGTACTACACCACGCTCAGCAAATCGCCTGAGAAGCTTCATCTCTTCTATGGCAAGCGCTCCCAGTTCGTCTAT
GGACTAGAGGCTGAAATTGCCAACGTGGCTGTTGGCCGTCAGGCTATCCAGGACCGCATCAAGCTGCTCGATTTC
CAGGACTGCAAGGTCCGCATTTCCAACGTGGACTCTCAAGCGTCGTTCGACAATATTGTCATTCAGGTTATAGGT
GAAACCTCGAACAAGGCTGCCGAGCCCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTAC
TTTGTCCTCAACGACATATTGAGGTACATTGACGAGGGCACTGAAGAAATCGCCGAGCCTGTCCCTGCCATTTGC
GCCGAGGAGCAAGCCGCCGTCTCGGACGCTCCATTGCCTGTCGAGGATATGTCTTCGCATCCAGTCGCCGTTTGC
GAGGAAGCCAATGACTTGGATACCAGTGTTGTAGACCAGAAGCTCGAAAAGGTTAGCCAGAGTGACGCCAAGGTG
AATGGAGACGACGCCCAGGCTAGCACCGAAGCTACCAAGGCGCCTGAGACCAAGGCGGCCGAACCTGCCCCAGCC
CCAGTGACGGATCCCGACGTTACTGCGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGCCTGAGAAGCCTCAGGAA
CCAAGTCCCACTCCTGTCTCGGTGGTCAAGTCTGCTCCCTTGGCTCAGCCGGCGACTCAAGCGCTCTCTGAGCCT
GCTGCTCCCCAGACCACTGCTGCCCAGGCTCCACCTCCTCCCGCTACGTCTGAGCCCGCGCTGCCGCCCAAGCCC
ATGACTTGGGCCAGCCGTGCTGCTGCTGCTGCTGGCCCTCGTCCTGTTGTGCCCTTGCCCAAGACTGCCACGCCT
CCCTCGCAGAATCAAAGTCGCGCTCCCACTACAGCAGCCCCATCAGCTACGGCGGCACCGGCTCCGGCGACTGCT
ACACCCCAGCCCTCTACACAGCCCCCCGCCGCTGCTGCCCCGGCAAGTGTGCCAGCTCCTGCCGCTGATGGTCCC
AAGGAAATCTCTGGTTGGCAGACGGCAGGCGCTGACTCGAAGCGCCAAAATCGGCCACATTCACTGTCGGGCAAC
TTGACCGATAAGGACGGTACCATGGGCTACGTCAAGTATGTGACGGATAAGGTGATGGAGGCTGATCTTCGAAAT
GAGTTGGCTGCTCACGGTGAGCTTACATACTTTGACATCAATCGCCAAAAGAATTGCGCTTTTGTGGAGTATAAG
ACGATTGAGGGGTACCAGGCTGCAGTTTCCAAGAATCCCCATATTGTCAATGGTGAGAGCATCATTGTTGAACCC
CGGCGGCCCAAGGCTACGGCATACGGAGGCCCCAACTACGTTGGTCGAGGTAATGCCTCGGGCCGCGGCAGGGGC
GGCTTCGATGGAAACCGGAGCAGTGGTCATGGAGGCTCACGAGGTAGCTTCTCGGGCCAGAGCCGGGGCCGTGGT
GGAATGCCACGTGGTCGCGGCGGCGTTCAGCCAAACATAATTTAG
Gene >OphauB2|4149
ATGGCAACAAACGGAAGTTTTGCCCTACAGGATCAATATAAAGCGTCTGCCGAGCCCTATGGCGCCGCTGCCACC
ACTGGCGATGCTGCCAATGCCGCAACGGCCAATAGCAACCTATCCAAAGATGAGGTTGCCTGGTACTTTGTTGAG
CAGTACTACACCACGCTCAGCAAATCGCCTGAGAAGCTTCATGTACGCCTCCCCGACTTGCGCCACCAGTGCTAC
GCGCTTACTAACATGCCCTTTTATCCTGTAGCTCTTCTATGGCAAGCGCTCCCAGTTCGTCTATGGACTAGAGGC
TGAAATTGCCAACGTGGCTGTTGGCCGTCAGGTACGTCTCTACCTGTCGGGCGCTGCGCCATTCTCCGCCTGACT
CTTGCTCGCCATAAAAGGCTATCCAGGACCGCATCAAGCTGCTCGATTTCCAGGACTGCAAGGTCCGCATTTCCA
ACGTGGACTCTCAAGCGTCGTTCGACAATATTGTCATTCAGGTTATAGGTGAAACCTCGAACAAGGCTGCCGAGC
CCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTACTTTGTCCTCAACGACATATTGAGGT
ACATTGACGAGGGCACTGAAGAAATCGCCGAGCCTGTCCCTGCCATTTGCGCCGAGGAGCAAGCCGCCGTCTCGG
ACGCTCCATTGCCTGTCGAGGATATGTCTTCGCATCCAGTCGCCGTTTGCGAGGAAGCCAATGACTTGGATACCA
GTGTTGTAGACCAGAAGCTCGAAAAGGTTAGCCAGAGTGACGCCAAGGTGAATGGAGACGACGCCCAGGCTAGCA
CCGAAGCTACCAAGGCGCCTGAGACCAAGGCGGCCGAACCTGCCCCAGCCCCAGTGACGGATCCCGACGTTACTG
CGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGCCTGAGAAGCCTCAGGAACCAAGTCCCACTCCTGTCTCGGTGG
TCAAGTCTGCTCCCTTGGCTCAGCCGGCGACTCAAGCGCTCTCTGAGCCTGCTGCTCCCCAGACCACTGCTGCCC
AGGCTCCACCTCCTCCCGCTACGTCTGAGCCCGCGCTGCCGCCCAAGCCCATGACTTGGGCCAGCCGTGCTGCTG
CTGCTGCTGGCCCTCGTCCTGTTGTGCCCTTGCCCAAGACTGCCACGCCTCCCTCGCAGAATCAAAGTCGCGCTC
CCACTACAGCAGCCCCATCAGCTACGGCGGCACCGGCTCCGGCGACTGCTACACCCCAGCCCTCTACACAGCCCC
CCGCCGCTGCTGCCCCGGCAAGTGTGCCAGCTCCTGCCGCTGATGGTCCCAAGGAAATCTCTGGTTGGCAGACGG
CAGGCGCTGACTCGAAGCGCCAAAATCGGCCACATTCACTGTCGGGCAACTTGACCGATAAGGACGGTACCATGG
GCTACGTCAAGTATGTGACGGATAAGGTGATGGAGGCTGATCTTCGAAATGAGTTGGCTGCTCACGGTGAGCTTA
CATACTTTGACATCAATCGCCAAAAGGTAACGCCCTCTTTTGCTCATTTCTGTTGATTGTTGGCTAACAGGCGCT
TGTGATAGAATTGCGCTTTTGTGGAGTATAAGACGATTGAGGGGTACCAGGCTGCAGTTTCCAAGAATCCCCATA
TTGTCAATGGTGAGAGCATCATTGTTGAACCCCGGCGGCCCAAGGCTACGGCATACGGAGGCCCCAACTACGTTG
GTCGAGGTAATGCCTCGGGCCGCGGCAGGGGCGGCTTCGATGGAAACCGGAGCAGTGGTCATGGAGGCTCACGAG
GTAGCTTCTCGGGCCAGAGCCGGGGCCGTGGTGGAATGCCACGTGGTCGCGGCGGCGTTCAGCCAAACATAATTT
AG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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