© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4057 |
| Gene name | |
| Location | Contig_262:2714..4034 |
| Strand | + |
| Gene length (bp) | 1320 |
| Transcript length (bp) | 1188 |
| Coding sequence length (bp) | 1188 |
| Protein length (aa) | 396 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04142 | Nuc_sug_transp | Nucleotide-sugar transporter | 9.1E-08 | 115 | 213 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8N357|S35F6_HUMAN | Solute carrier family 35 member F6 OS=Homo sapiens GN=SLC35F6 PE=1 SV=1 | 9 | 390 | 3.0E-64 |
| sp|Q5RFT1|S35F6_PONAB | Solute carrier family 35 member F6 OS=Pongo abelii GN=SLC35F6 PE=2 SV=1 | 9 | 387 | 7.0E-64 |
| sp|Q09875|YAGC_SCHPO | Uncharacterized protein C12G12.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.12 PE=4 SV=1 | 13 | 374 | 1.0E-63 |
| sp|Q5RKH7|S35F6_RAT | Solute carrier family 35 member F6 OS=Rattus norvegicus GN=Slc35f6 PE=2 SV=1 | 9 | 387 | 5.0E-56 |
| sp|Q8VE96|S35F6_MOUSE | Solute carrier family 35 member F6 OS=Mus musculus GN=Slc35f6 PE=1 SV=1 | 9 | 377 | 1.0E-53 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0090481 | pyrimidine nucleotide-sugar transmembrane transport | Yes |
| GO:0000139 | Golgi membrane | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0098588 | bounding membrane of organelle | No |
| GO:0008150 | biological_process | No |
| GO:0016020 | membrane | No |
| GO:0071702 | organic substance transport | No |
| GO:0003674 | molecular_function | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| GO:0005338 | nucleotide-sugar transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:1901505 | carbohydrate derivative transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0015932 | nucleobase-containing compound transmembrane transporter activity | No |
| GO:1901264 | carbohydrate derivative transport | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0015780 | nucleotide-sugar transmembrane transport | No |
| GO:0031090 | organelle membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| 2 | 113 | 135 | 22 |
| 3 | 139 | 161 | 22 |
| 4 | 168 | 190 | 22 |
| 5 | 210 | 232 | 22 |
| 6 | 252 | 271 | 19 |
| 7 | 291 | 313 | 22 |
| 8 | 334 | 356 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4057 MATFAPLPFLVAMMLLTGVCNTLLTKYQDNQCVRNCGQDDAVRFEQPVLQTAQMFVGEMGCWLVIGIISLHRRLK SRSNSGYQPVATDANAPLATSVNDQAKHADSMLSGFRVVLLALPAICDICGTTLMNAGLLFVAASIFQMTRGALV LFVGLFSVLFLHRHLRLFQWLSLLGVVLGVAVVGLSGAIWPDQQQAFRITGSETALSDAARVAIGVLLIAGAQIF TATQFVLEEWLLEKSSIQPIKVVGWEGLFGFFVTLIVMVVMHLLVGRTDAGQYGYFDMREGFRQMMLRPIWISSV LIMISIGGFNYFGLSVTRSVSATSRSTIDTCRTLFIWIVSLGLGWESFKALQIVGFAMLVYSTFVFNGIVQPPLT CLRHDDEIEELLPEEPIEHI* |
| Coding | >OphauB2|4057 ATGGCGACTTTCGCACCACTTCCCTTTCTCGTGGCCATGATGCTTCTCACTGGCGTCTGCAACACGCTCTTGACC AAGTATCAGGATAACCAATGTGTTCGTAATTGTGGCCAAGACGACGCAGTCCGCTTTGAGCAGCCCGTGTTGCAG ACGGCCCAGATGTTTGTGGGTGAAATGGGATGCTGGCTTGTCATCGGCATCATTTCTCTGCATCGGCGGCTCAAA TCGCGCTCAAATAGTGGCTATCAGCCTGTTGCAACTGATGCCAACGCCCCCCTCGCCACTAGCGTCAATGACCAA GCCAAGCATGCCGATTCGATGCTCAGCGGCTTCCGAGTAGTTCTGCTGGCCTTGCCAGCCATATGCGATATATGC GGCACCACACTCATGAATGCAGGACTTCTTTTTGTTGCCGCTTCGATATTCCAAATGACGCGCGGCGCCCTGGTT CTTTTTGTTGGACTATTCAGTGTCCTTTTCTTGCACAGACACCTGCGTCTTTTCCAGTGGCTTTCCCTGCTAGGT GTCGTCCTTGGCGTCGCTGTTGTTGGCCTCTCAGGGGCCATATGGCCTGACCAACAACAGGCGTTTCGCATCACG GGCTCAGAGACTGCCTTGTCAGATGCTGCGCGAGTTGCTATTGGTGTCTTACTCATTGCTGGTGCTCAGATCTTT ACCGCTACCCAATTCGTACTTGAAGAGTGGCTCCTAGAGAAGTCTTCTATTCAGCCCATTAAGGTAGTGGGGTGG GAAGGACTATTCGGCTTTTTTGTCACACTGATCGTAATGGTTGTCATGCATCTCCTTGTCGGCAGGACCGACGCT GGGCAGTACGGCTATTTCGATATGCGAGAGGGCTTTCGTCAAATGATGCTTAGGCCCATATGGATATCCAGTGTC CTCATTATGATAAGCATTGGTGGCTTCAACTACTTTGGTTTATCTGTGACGCGCAGCGTCAGTGCCACGTCACGT TCAACCATTGACACTTGCAGGACTTTATTTATATGGATTGTCTCTCTCGGCCTTGGCTGGGAGTCGTTCAAGGCG CTACAGATTGTCGGCTTCGCCATGCTGGTCTACTCAACTTTTGTTTTTAACGGCATCGTTCAACCACCTTTGACT TGTTTGCGCCACGACGACGAGATAGAGGAGTTGCTTCCTGAAGAACCAATTGAGCACATCTGA |
| Transcript | >OphauB2|4057 ATGGCGACTTTCGCACCACTTCCCTTTCTCGTGGCCATGATGCTTCTCACTGGCGTCTGCAACACGCTCTTGACC AAGTATCAGGATAACCAATGTGTTCGTAATTGTGGCCAAGACGACGCAGTCCGCTTTGAGCAGCCCGTGTTGCAG ACGGCCCAGATGTTTGTGGGTGAAATGGGATGCTGGCTTGTCATCGGCATCATTTCTCTGCATCGGCGGCTCAAA TCGCGCTCAAATAGTGGCTATCAGCCTGTTGCAACTGATGCCAACGCCCCCCTCGCCACTAGCGTCAATGACCAA GCCAAGCATGCCGATTCGATGCTCAGCGGCTTCCGAGTAGTTCTGCTGGCCTTGCCAGCCATATGCGATATATGC GGCACCACACTCATGAATGCAGGACTTCTTTTTGTTGCCGCTTCGATATTCCAAATGACGCGCGGCGCCCTGGTT CTTTTTGTTGGACTATTCAGTGTCCTTTTCTTGCACAGACACCTGCGTCTTTTCCAGTGGCTTTCCCTGCTAGGT GTCGTCCTTGGCGTCGCTGTTGTTGGCCTCTCAGGGGCCATATGGCCTGACCAACAACAGGCGTTTCGCATCACG GGCTCAGAGACTGCCTTGTCAGATGCTGCGCGAGTTGCTATTGGTGTCTTACTCATTGCTGGTGCTCAGATCTTT ACCGCTACCCAATTCGTACTTGAAGAGTGGCTCCTAGAGAAGTCTTCTATTCAGCCCATTAAGGTAGTGGGGTGG GAAGGACTATTCGGCTTTTTTGTCACACTGATCGTAATGGTTGTCATGCATCTCCTTGTCGGCAGGACCGACGCT GGGCAGTACGGCTATTTCGATATGCGAGAGGGCTTTCGTCAAATGATGCTTAGGCCCATATGGATATCCAGTGTC CTCATTATGATAAGCATTGGTGGCTTCAACTACTTTGGTTTATCTGTGACGCGCAGCGTCAGTGCCACGTCACGT TCAACCATTGACACTTGCAGGACTTTATTTATATGGATTGTCTCTCTCGGCCTTGGCTGGGAGTCGTTCAAGGCG CTACAGATTGTCGGCTTCGCCATGCTGGTCTACTCAACTTTTGTTTTTAACGGCATCGTTCAACCACCTTTGACT TGTTTGCGCCACGACGACGAGATAGAGGAGTTGCTTCCTGAAGAACCAATTGAGCACATCTGA |
| Gene | >OphauB2|4057 ATGGCGACTTTCGCACCACTTCCCTTTCTCGTGGCCATGATGCTTCTCACTGGCGTCTGCAACACGCTCTTGACC AAGTATCAGGCAAGTTGTCGTCATCTGTCACCTATGAAGCGGAACAGATTTGCTAATTCTAGAGGTTGACAGGAT AACCAATGTGTTCGTAATTGTGGCCAAGACGACGCAGTCCGCTTTGAGCAGCCCGTGTTGCAGACGGCCCAGATG TTTGTGGGTGAAATGGGATGCTGGCTTGTCATCGGCATCATTTCTCTGCATCGGCGGCTCAAATCGCGCTCAAAT AGTGGCTATCAGCCTGTTGCAACTGATGCCAACGCCCCCCTCGCCACTAGCGTCAATGACCAAGCCAAGCATGCC GATTCGATGCTCAGCGGCTTCCGAGTAGTTCTGCTGGCCTTGCCAGCCATATGCGATATATGCGGCACCACACTC ATGAATGCAGGACTTCTTTTTGTTGCCGCTTCGATATTCCAAATGACGCGCGGCGCCCTGGTTCTTTTTGTTGGA CTATTCAGTGTCCTTTTCTTGCACAGACACCTGCGTCTTTTCCAGTGGCTTTCCCTGCTAGGTGTCGTCCTTGGC GTCGCTGTTGTTGGCCTCTCAGGGGCCATATGGCCTGACCAACAACAGGCGTTTCGCATCACGGGCTCAGAGACT GCCTTGTCAGATGCTGCGCGAGTTGCTATTGGTGTCTTACTCATTGCTGGTGCTCAGATCTTTACCGCTACCCAA TTCGTACTTGAAGAGTGGCTCCTAGAGAAGTCTTCTATTCAGCCCATTAAGGTAGTGGGGTGGGAAGGACTATTC GGCTTTTTTGTCACACTGATCGTAATGGTTGTCATGCATCTCCTTGTCGGCAGGACCGACGCTGGGCAGTACGGC TATTTCGATATGCGAGAGGGCTTTCGTCAAATGATGCTTAGGCCCATATGGATATCCAGTGTCCTCATTATGATA AGCATTGGGTAAGAATCACCATTCATTTGTCGGCTCTATCAACAGCAACTAACTCAGGCTCTTCTCTCACTTTTT AGTGGCTTCAACTACTTTGGTTTATCTGTGACGCGCAGCGTCAGTGCCACGTCACGTTCAACCATTGACACTTGC AGGACTTTATTTATATGGATTGTCTCTCTCGGCCTTGGCTGGGAGTCGTTCAAGGCGCTACAGATTGTCGGCTTC GCCATGCTGGTCTACTCAACTTTTGTTTTTAACGGCATCGTTCAACCACCTTTGACTTGTTTGCGCCACGACGAC GAGATAGAGGAGTTGCTTCCTGAAGAACCAATTGAGCACATCTGA |