© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4022 |
| Gene name | |
| Location | Contig_26:107154..108979 |
| Strand | + |
| Gene length (bp) | 1825 |
| Transcript length (bp) | 1587 |
| Coding sequence length (bp) | 1587 |
| Protein length (aa) | 529 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04515 | Choline_transpo | Plasma-membrane choline transporter | 4.0E-73 | 202 | 500 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WYG7|PNS1_ASPFU | Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 | 25 | 525 | 0.0E+00 |
| sp|Q4I8E9|PNS1_GIBZE | Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 | 48 | 527 | 0.0E+00 |
| sp|Q870V7|PNS1_NEUCR | Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 | 11 | 525 | 0.0E+00 |
| sp|Q6C938|PNS1_YARLI | Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 | 20 | 526 | 6.0E-135 |
| sp|Q6BIV4|PNS1_DEBHA | Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 | 67 | 524 | 3.0E-128 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WYG7|PNS1_ASPFU | Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 | 25 | 525 | 0.0E+00 |
| sp|Q4I8E9|PNS1_GIBZE | Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 | 48 | 527 | 0.0E+00 |
| sp|Q870V7|PNS1_NEUCR | Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 | 11 | 525 | 0.0E+00 |
| sp|Q6C938|PNS1_YARLI | Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 | 20 | 526 | 6.0E-135 |
| sp|Q6BIV4|PNS1_DEBHA | Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 | 67 | 524 | 3.0E-128 |
| sp|Q12412|PNS1_YEAST | Protein PNS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNS1 PE=1 SV=1 | 35 | 525 | 2.0E-127 |
| sp|Q5AB93|PNS1_CANAL | Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 | 34 | 524 | 5.0E-126 |
| sp|Q75EG5|PNS1_ASHGO | Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 | 13 | 520 | 4.0E-117 |
| sp|Q6CY85|PNS1_KLULA | Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 | 11 | 525 | 4.0E-115 |
| sp|Q6FLC9|PNS1_CANGA | Protein PNS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PNS1 PE=3 SV=1 | 49 | 520 | 2.0E-111 |
| sp|P0CM92|PNS1_CRYNJ | Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PNS1 PE=3 SV=1 | 20 | 524 | 1.0E-97 |
| sp|P0CM93|PNS1_CRYNB | Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PNS1 PE=3 SV=1 | 20 | 524 | 1.0E-97 |
| sp|Q4PIP8|PNS1_USTMA | Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=2 | 25 | 524 | 9.0E-83 |
| sp|Q869R1|CTLHB_DICDI | CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 | 73 | 511 | 3.0E-34 |
| sp|Q55CN8|CTLHC_DICDI | CTL-like protein DDB_G0269978 OS=Dictyostelium discoideum GN=DDB_G0269978 PE=3 SV=1 | 59 | 415 | 2.0E-13 |
| sp|Q54IJ2|CTLHA_DICDI | CTL-like protein DDB_G0288717 OS=Dictyostelium discoideum GN=DDB_G0288717 PE=3 SV=1 | 145 | 527 | 2.0E-13 |
| sp|A8XKF2|CTL1L_CAEBR | Choline transporter-like protein 1 OS=Caenorhabditis briggsae GN=chtl-1 PE=3 SV=2 | 293 | 449 | 4.0E-11 |
| sp|Q20026|CTL1L_CAEEL | Choline transporter-like protein 1 OS=Caenorhabditis elegans GN=chtl-1 PE=3 SV=1 | 293 | 447 | 6.0E-11 |
| sp|B4F795|CTL2_RAT | Choline transporter-like protein 2 OS=Rattus norvegicus GN=Slc44a2 PE=2 SV=1 | 273 | 447 | 3.0E-08 |
| sp|Q8NCS7|CTL5_HUMAN | Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=4 | 295 | 447 | 4.0E-08 |
| sp|Q8BY89|CTL2_MOUSE | Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2 | 152 | 447 | 4.0E-08 |
| sp|B0JZD0|CTL5_XENTR | Choline transporter-like protein 5 OS=Xenopus tropicalis GN=slc44a5 PE=2 SV=1 | 298 | 500 | 7.0E-08 |
| sp|Q95JW2|CTL5_MACFA | Choline transporter-like protein 5 OS=Macaca fascicularis GN=SLC44A5 PE=2 SV=1 | 295 | 494 | 9.0E-08 |
| sp|Q91VA1|CTL4_MOUSE | Choline transporter-like protein 4 OS=Mus musculus GN=Slc44a4 PE=1 SV=1 | 277 | 494 | 1.0E-07 |
| sp|Q5RJI2|CTL5_MOUSE | Choline transporter-like protein 5 OS=Mus musculus GN=Slc44a5 PE=2 SV=1 | 246 | 446 | 1.0E-07 |
| sp|A5D7H3|CTL2_BOVIN | Choline transporter-like protein 2 OS=Bos taurus GN=SLC44A2 PE=2 SV=1 | 273 | 447 | 5.0E-07 |
| sp|Q6MG71|CTL4_RAT | Choline transporter-like protein 4 OS=Rattus norvegicus GN=Slc44a4 PE=2 SV=1 | 286 | 494 | 1.0E-06 |
| sp|Q810F1|CTL2_CAVPO | Choline transporter-like protein 2 OS=Cavia porcellus GN=SLC44A2 PE=1 SV=1 | 274 | 447 | 1.0E-06 |
| sp|Q6GN42|CTL4_XENLA | Choline transporter-like protein 4 OS=Xenopus laevis GN=slc44a4 PE=2 SV=1 | 269 | 458 | 1.0E-06 |
| sp|F1S584|CTL2_PIG | Choline transporter-like protein 2 OS=Sus scrofa GN=SLC44A2 PE=3 SV=1 | 290 | 447 | 2.0E-06 |
| sp|A5PMW0|CTL5A_DANRE | Choline transporter-like protein 5-A (Fragment) OS=Danio rerio GN=slc44a5a PE=3 SV=1 | 307 | 500 | 5.0E-06 |
| sp|Q7T2B0|CTL4_DANRE | Choline transporter-like protein 4 OS=Danio rerio GN=slc44a4 PE=2 SV=1 | 287 | 449 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 97 | 119 | 22 |
| 2 | 144 | 166 | 22 |
| 3 | 173 | 192 | 19 |
| 4 | 197 | 219 | 22 |
| 5 | 240 | 262 | 22 |
| 6 | 311 | 330 | 19 |
| 7 | 343 | 365 | 22 |
| 8 | 380 | 402 | 22 |
| 9 | 423 | 445 | 22 |
| 10 | 460 | 482 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4022 MREGDNYYNLDHQRNPWQQQQQQAPPQQYPMESQYQQGAPPPQHDYYNAPPNANGGYPQQPTYGAPPPYSYNPPQ PNDEKYSFDEAFKIEKPKYNDWWAGLLLIGVFAGFVVISGITIRTYATTGNTGGGIYGGSNNFSLDANTIILFAF VLVVAFVLSWLYILIARLFPKQFIWVTGILNICWALGTAIFYLWRKYWSAGIVFLIFACFTAFAFWTWIPRIPFS ALMLKTTINVSKRYGHVYLVSVIGGFLATALSAWFAVTLVAIYVKYEPSDNNPECRNGNCSKAKVIGLIVYVTFA MYWISEWLKNTIHTIISGVYGSWYFAVHNFPRAATRGAAKRALTYSFGSISLGSLLVAIVQFLRQVCSVARNQAG DSGGIGGMFLNRYAFSHIALYGKAYIPAAKDTWHMIRDRGIDALVNECLIGPVLSFGSMFVAFACALLSYLYLEF TKPAYNSDGNFTAVIMAFSFLIGFQIALIFTTPLSSGIDTIFVAAGWDPQVMINDHPELYQEMVRLYPKVQQAIQ VRR* |
| Coding | >OphauB2|4022 ATGCGCGAGGGCGATAACTACTACAACCTCGACCATCAGCGCAATCCCTGGCAGCAGCAACAGCAGCAGGCTCCC CCCCAGCAGTATCCCATGGAGTCGCAGTACCAGCAGGGCGCGCCGCCGCCGCAGCACGACTATTACAATGCGCCG CCGAATGCGAATGGGGGATATCCGCAGCAGCCGACATATGGCGCGCCGCCGCCGTATAGCTACAATCCGCCGCAG CCCAATGATGAAAAGTACTCGTTTGACGAGGCCTTTAAGATTGAGAAGCCAAAGTATAACGATTGGTGGGCTGGG CTCTTGCTTATTGGAGTGTTTGCGGGCTTTGTCGTCATTTCGGGCATTACGATTCGAACCTATGCGACAACGGGC AACACTGGCGGAGGCATCTACGGCGGCAGCAACAACTTTTCGCTCGATGCTAATACCATTATCCTCTTTGCCTTT GTGCTGGTTGTCGCCTTTGTCCTGTCGTGGCTCTACATTCTCATTGCGCGCCTCTTCCCCAAGCAGTTTATCTGG GTGACGGGCATCCTCAACATTTGCTGGGCGCTCGGCACCGCCATTTTTTACCTGTGGCGCAAGTACTGGTCGGCC GGCATCGTCTTTCTCATCTTTGCCTGCTTCACAGCCTTTGCCTTTTGGACGTGGATCCCGCGCATTCCCTTTTCC GCACTCATGCTCAAGACGACGATTAATGTGAGCAAGCGCTACGGCCACGTCTACCTTGTCAGCGTCATTGGCGGC TTTCTTGCCACGGCGCTGTCGGCCTGGTTTGCCGTGACGCTCGTGGCCATTTATGTAAAGTATGAGCCGTCGGAT AATAACCCCGAGTGCCGCAACGGCAACTGCAGCAAGGCAAAGGTGATTGGCTTGATTGTCTACGTCACCTTTGCC ATGTACTGGATCTCGGAGTGGCTCAAGAATACCATTCACACCATTATTTCGGGCGTCTATGGGTCTTGGTACTTT GCCGTGCACAATTTCCCCCGTGCAGCCACGCGCGGTGCCGCCAAGCGAGCCCTGACGTATAGCTTTGGCTCCATT AGCCTGGGCAGTCTGCTCGTCGCTATTGTCCAGTTTTTGCGCCAAGTGTGCTCCGTGGCGCGAAACCAGGCTGGC GACAGCGGCGGCATTGGCGGCATGTTTCTCAATCGCTACGCCTTTTCGCATATTGCGCTCTATGGAAAGGCGTAT ATCCCGGCGGCAAAGGATACGTGGCACATGATTCGCGACCGCGGCATTGACGCCCTCGTCAATGAATGCCTCATT GGCCCCGTCCTCTCCTTTGGATCCATGTTTGTCGCGTTTGCCTGCGCCCTCCTCTCATACCTCTACCTCGAATTC ACCAAGCCCGCATACAACTCGGACGGCAACTTTACCGCTGTCATCATGGCGTTTTCCTTTCTCATTGGATTCCAA ATCGCACTCATCTTTACCACCCCGCTGTCTAGTGGCATAGACACCATTTTTGTGGCGGCGGGCTGGGATCCGCAA GTCATGATTAATGATCATCCAGAACTGTACCAGGAAATGGTGCGCTTGTATCCCAAGGTACAGCAGGCGATTCAG GTGCGCCGATGA |
| Transcript | >OphauB2|4022 ATGCGCGAGGGCGATAACTACTACAACCTCGACCATCAGCGCAATCCCTGGCAGCAGCAACAGCAGCAGGCTCCC CCCCAGCAGTATCCCATGGAGTCGCAGTACCAGCAGGGCGCGCCGCCGCCGCAGCACGACTATTACAATGCGCCG CCGAATGCGAATGGGGGATATCCGCAGCAGCCGACATATGGCGCGCCGCCGCCGTATAGCTACAATCCGCCGCAG CCCAATGATGAAAAGTACTCGTTTGACGAGGCCTTTAAGATTGAGAAGCCAAAGTATAACGATTGGTGGGCTGGG CTCTTGCTTATTGGAGTGTTTGCGGGCTTTGTCGTCATTTCGGGCATTACGATTCGAACCTATGCGACAACGGGC AACACTGGCGGAGGCATCTACGGCGGCAGCAACAACTTTTCGCTCGATGCTAATACCATTATCCTCTTTGCCTTT GTGCTGGTTGTCGCCTTTGTCCTGTCGTGGCTCTACATTCTCATTGCGCGCCTCTTCCCCAAGCAGTTTATCTGG GTGACGGGCATCCTCAACATTTGCTGGGCGCTCGGCACCGCCATTTTTTACCTGTGGCGCAAGTACTGGTCGGCC GGCATCGTCTTTCTCATCTTTGCCTGCTTCACAGCCTTTGCCTTTTGGACGTGGATCCCGCGCATTCCCTTTTCC GCACTCATGCTCAAGACGACGATTAATGTGAGCAAGCGCTACGGCCACGTCTACCTTGTCAGCGTCATTGGCGGC TTTCTTGCCACGGCGCTGTCGGCCTGGTTTGCCGTGACGCTCGTGGCCATTTATGTAAAGTATGAGCCGTCGGAT AATAACCCCGAGTGCCGCAACGGCAACTGCAGCAAGGCAAAGGTGATTGGCTTGATTGTCTACGTCACCTTTGCC ATGTACTGGATCTCGGAGTGGCTCAAGAATACCATTCACACCATTATTTCGGGCGTCTATGGGTCTTGGTACTTT GCCGTGCACAATTTCCCCCGTGCAGCCACGCGCGGTGCCGCCAAGCGAGCCCTGACGTATAGCTTTGGCTCCATT AGCCTGGGCAGTCTGCTCGTCGCTATTGTCCAGTTTTTGCGCCAAGTGTGCTCCGTGGCGCGAAACCAGGCTGGC GACAGCGGCGGCATTGGCGGCATGTTTCTCAATCGCTACGCCTTTTCGCATATTGCGCTCTATGGAAAGGCGTAT ATCCCGGCGGCAAAGGATACGTGGCACATGATTCGCGACCGCGGCATTGACGCCCTCGTCAATGAATGCCTCATT GGCCCCGTCCTCTCCTTTGGATCCATGTTTGTCGCGTTTGCCTGCGCCCTCCTCTCATACCTCTACCTCGAATTC ACCAAGCCCGCATACAACTCGGACGGCAACTTTACCGCTGTCATCATGGCGTTTTCCTTTCTCATTGGATTCCAA ATCGCACTCATCTTTACCACCCCGCTGTCTAGTGGCATAGACACCATTTTTGTGGCGGCGGGCTGGGATCCGCAA GTCATGATTAATGATCATCCAGAACTGTACCAGGAAATGGTGCGCTTGTATCCCAAGGTACAGCAGGCGATTCAG GTGCGCCGATGA |
| Gene | >OphauB2|4022 ATGCGCGAGGGCGATAACTACTACAACCTCGACCATCAGCGCAATCCCTGGCAGCAGCAACAGCAGCAGGCTCCC CCCCAGCAGTATCCCATGGAGTCGCAGTACCAGCAGGGCGCGCCGCCGCCGCAGCACGACTATTACAATGCGCCG CCGAATGCGAATGGGGGATATCCGCAGCAGCCGACATATGGCGCGCCGCCGCCGTATAGCTACAATCCGCCGCAG CCCAATGATGAAAAGTACTCGTTTGACGAGGCCTTTAAGATTGAGAAGCCAAAGTATAACGATTGGTGGGCTGGG CTCTTGGTGAGTTGGCTTCCATCTTTGCTTGCCCCTGCTACCACGACTCTTTCTGCGTCTTGGGGGCTAAACAAT CACGTCTGCAGCTTATTGGAGTGTTTGCGGGCTTTGTCGTCATTTCGGGCATTACGATTCGAACCTATGCGACAA CGGGCAACACTGGCGGAGGCATCTACGGCGGCAGCAACAACTTTTCGCTCGATGCTAATACCATTATCCTCTTTG CCTTTGTGCTGGTTGTCGCCTTTGTCCTGTCGTGGCTCTACATTCTCATTGCGCGCCTCTTCCCCAAGCAGTTTA TCTGGGTGACGGGCATCCTCAACATTTGCTGGGCGCTCGGCACCGCCATTTTTTACCTGTGGCGCAAGTACTGGT CGGCCGGCATCGTCTTTCTCATCTTTGCCTGCTTCACAGCCTTTGCCTTTTGGACGTGGATCCCGCGCATTCCCT TTTCCGCACTCATGCTCAAGACGACGATTAATGTGAGCAAGCGCTACGGCCACGTCTACCTTGTCAGCGTCATTG GCGGCTTTCTTGCCACGGCGCTGTCGGCCTGGTTTGCCGTGACGCTCGTGGCCATTTATGTAAAGTATGAGCCGT CGGATAATAACCCCGAGTGCCGCAACGGCAACTGCAGCAAGGCAAAGGTGATTGGCTTGATTGTCTACGTCACCT TTGCCATGTACTGGATCTCGGAGTGGCTCAAGAATACCATTCACACCATTATTTCGGGCGTCTATGGGTCTTGGT ACTTTGCCGTGCACAATTTCCCCCGTGCAGCCACGCGCGGTGCCGCCAAGCGAGCCCTGACGTATAGCTTTGGCT CCATTAGCCTGGGCAGTCTGCTCGTCGCTATTGTCCAGTTTTTGCGCCAAGTGTGCTCCGTGGCGCGAAACCAGG CTGGCGACAGCGGCGGCATTGGCGGCATGGTGGGCTATATCCTCTTTTGCTTCCTTGGCTGCTTGATTAGTCTGT TGGAGTGGGCGCTGCAGTTTCTCAATCGCTACGCCTTTTCGCATATTGCGCTCTATGGAAAGGCGTATATCCCGG CGGCAAAGGATACGTGGCACATGATTCGCGACCGCGGCATTGACGCCCTCGTCAATGTATGTTGTCTCGCCTCTT TTTTTCCGCAATCTTTTTTTTTTCTCCATTCTTCTCTTGTACCTGTAAAGAACAAAACTAACCCCCCATGCTTTA GGAATGCCTCATTGGCCCCGTCCTCTCCTTTGGATCCATGTTTGTCGCGTTTGCCTGCGCCCTCCTCTCATACCT CTACCTCGAATTCACCAAGCCCGCATACAACTCGGACGGCAACTTTACCGCTGTCATCATGGCGTTTTCCTTTCT CATTGGATTCCAAATCGCACTCATCTTTACCACCCCGCTGTCTAGTGGCATAGACACCATTTTTGTGGCGGCGGG CTGGGATCCGCAAGTCATGATTAATGATCATCCAGAACTGTACCAGGAAATGGTGCGCTTGTATCCCAAGGTACA GCAGGCGATTCAGGTGCGCCGATGA |