Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3973
Gene name
LocationContig_258:9124..10876
Strand+
Gene length (bp)1752
Transcript length (bp)1752
Coding sequence length (bp)1752
Protein length (aa) 584

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01694 Rhomboid Rhomboid family 3.5E-16 408 555

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 366 490 4.0E-11
sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 373 550 3.0E-09
sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 365 520 2.0E-08
sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 365 520 3.0E-08
sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 365 490 1.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 366 490 4.0E-11
sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 373 550 3.0E-09
sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 365 520 2.0E-08
sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 365 520 3.0E-08
sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 365 490 1.0E-07
sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 365 490 2.0E-07
sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 365 490 2.0E-07
sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1 363 490 9.0E-06
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GO

GO Term Description Terminal node
GO:0004252 serine-type endopeptidase activity Yes
GO:0016021 integral component of membrane Yes
GO:0003824 catalytic activity No
GO:0008236 serine-type peptidase activity No
GO:0110165 cellular anatomical entity No
GO:0017171 serine hydrolase activity No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0008233 peptidase activity No
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No
GO:0140096 catalytic activity, acting on a protein No
GO:0004175 endopeptidase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

Domain # Start End Length
1 332 351 19
2 366 388 22
3 395 417 22
4 446 468 22
5 473 495 22
6 510 528 18

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3973
MSLFLSYRAHGSRAWLGAAARGFLRWEAQADGCTRARVSTALASTAHVSTAQLSSCLPRNRPTGLVHQKGSIASQ
LASKAHRRTGCRTFFSRIITDYIQLPPNYRDAQGLEFSRKQLSQEQVYKIFGKELDAVQANRLLRIMHGRRVAGT
LQDPVLAVHTKQYTKEQMDKALAYLRETVYVPEIINAGLRAEDELADIQDIMADKEEQRIQRAKEKAEAGDQEDD
APVITRRKKEDYEEFYKPDPIYGPSKLDEIRARNVARARALQRIKAEKEKQTQAQSEAAQKKEAKAQALVKAQEE
KRKITNPKIAKYEKQAQSKLEAPPAMRTWERILPSATVVALVLGFAAAVGAVYEEPGPRYRLIPNVSTANATVGC
IVAINALVLLAWRVPQLWRFLNRWMIFIVATPRPVTLFTAIFSHQRLGHMLINMTVLSLIGPRLHDDVGRANFVA
LYLASGSIGFLGALTVYTLKGMLNVTSMGASAAALGVTAAYFWHHRLDGFKIMELPPGEGVHGIIFLAVMLALHL
GSLKSWMRRKLDVVSHRAGMAAGILAMALLELGRRGGGGASTSPARQGGAVASPMQAS*
Coding >OphauB2|3973
ATGAGCCTTTTTCTCAGCTACCGCGCCCATGGCTCACGGGCATGGTTGGGGGCTGCAGCGCGTGGTTTTTTGCGC
TGGGAGGCGCAAGCAGATGGCTGTACTAGAGCACGCGTTTCGACAGCTCTCGCCTCGACAGCACACGTTTCGACA
GCACAATTGTCAAGCTGCCTGCCTCGAAATAGACCGACTGGACTCGTCCACCAAAAAGGCAGCATCGCTTCACAG
CTTGCAAGCAAAGCGCACCGGCGCACCGGCTGTCGGACATTTTTCTCTCGCATAATCACCGACTATATACAGCTA
CCGCCCAACTACCGCGATGCCCAAGGCCTTGAGTTTAGCCGCAAGCAACTATCGCAGGAGCAGGTTTACAAGATT
TTTGGCAAGGAGCTGGACGCGGTCCAGGCAAATCGCCTGCTGCGCATTATGCACGGGAGAAGAGTTGCTGGCACG
CTGCAAGATCCAGTCTTGGCGGTGCATACAAAGCAGTATACGAAGGAACAAATGGACAAGGCTCTAGCCTACTTG
CGGGAAACGGTCTATGTGCCGGAAATCATAAACGCTGGCTTGCGGGCCGAGGACGAGCTTGCAGACATACAAGAC
ATCATGGCGGACAAGGAGGAGCAGCGGATACAAAGGGCCAAGGAAAAGGCCGAGGCAGGGGACCAAGAGGACGAC
GCCCCCGTGATAACAAGGAGGAAGAAGGAAGACTACGAGGAGTTTTACAAGCCGGATCCAATATATGGCCCGAGC
AAGCTGGATGAGATTCGGGCGCGCAATGTGGCGCGGGCAAGGGCGCTGCAAAGGATAAAGGCCGAAAAGGAGAAG
CAGACGCAGGCACAGAGCGAGGCTGCTCAAAAAAAAGAGGCCAAGGCTCAAGCACTAGTCAAGGCGCAGGAGGAG
AAGCGCAAGATTACCAACCCCAAGATTGCAAAGTACGAAAAGCAGGCGCAGTCCAAGCTCGAGGCACCGCCGGCC
ATGAGGACGTGGGAGCGCATTCTCCCCTCGGCAACGGTTGTGGCACTGGTGCTGGGCTTTGCAGCAGCCGTGGGA
GCCGTGTACGAGGAGCCGGGGCCGCGCTACCGCCTCATTCCCAACGTGTCAACGGCAAACGCCACGGTGGGCTGC
ATTGTTGCAATCAATGCCCTCGTCTTGCTCGCGTGGCGGGTGCCGCAGCTGTGGCGCTTTTTGAACCGCTGGATG
ATTTTCATTGTTGCCACGCCGCGGCCCGTGACGCTCTTTACCGCAATCTTTTCCCACCAGCGGCTGGGCCACATG
CTCATCAACATGACGGTGCTGTCGCTCATTGGGCCGCGGCTGCACGACGACGTTGGCCGGGCAAACTTTGTGGCG
CTCTACCTTGCCAGCGGCTCCATTGGCTTCCTGGGCGCCCTCACCGTCTACACCCTCAAGGGCATGCTAAACGTC
ACCTCCATGGGCGCGTCGGCCGCGGCGCTGGGCGTCACGGCAGCCTACTTTTGGCACCACCGGCTCGACGGCTTC
AAGATTATGGAGCTGCCGCCGGGCGAGGGCGTCCACGGCATTATATTCCTGGCCGTCATGCTGGCGCTGCATCTG
GGCAGTCTCAAGTCGTGGATGCGGCGCAAGCTCGACGTGGTGTCGCATCGTGCCGGCATGGCGGCAGGCATCTTG
GCCATGGCGCTGCTGGAGCTGGGGCGGCGTGGGGGCGGCGGCGCGAGCACGTCACCCGCGAGGCAGGGAGGGGCG
GTGGCGTCGCCAATGCAGGCGTCATGA
Transcript >OphauB2|3973
ATGAGCCTTTTTCTCAGCTACCGCGCCCATGGCTCACGGGCATGGTTGGGGGCTGCAGCGCGTGGTTTTTTGCGC
TGGGAGGCGCAAGCAGATGGCTGTACTAGAGCACGCGTTTCGACAGCTCTCGCCTCGACAGCACACGTTTCGACA
GCACAATTGTCAAGCTGCCTGCCTCGAAATAGACCGACTGGACTCGTCCACCAAAAAGGCAGCATCGCTTCACAG
CTTGCAAGCAAAGCGCACCGGCGCACCGGCTGTCGGACATTTTTCTCTCGCATAATCACCGACTATATACAGCTA
CCGCCCAACTACCGCGATGCCCAAGGCCTTGAGTTTAGCCGCAAGCAACTATCGCAGGAGCAGGTTTACAAGATT
TTTGGCAAGGAGCTGGACGCGGTCCAGGCAAATCGCCTGCTGCGCATTATGCACGGGAGAAGAGTTGCTGGCACG
CTGCAAGATCCAGTCTTGGCGGTGCATACAAAGCAGTATACGAAGGAACAAATGGACAAGGCTCTAGCCTACTTG
CGGGAAACGGTCTATGTGCCGGAAATCATAAACGCTGGCTTGCGGGCCGAGGACGAGCTTGCAGACATACAAGAC
ATCATGGCGGACAAGGAGGAGCAGCGGATACAAAGGGCCAAGGAAAAGGCCGAGGCAGGGGACCAAGAGGACGAC
GCCCCCGTGATAACAAGGAGGAAGAAGGAAGACTACGAGGAGTTTTACAAGCCGGATCCAATATATGGCCCGAGC
AAGCTGGATGAGATTCGGGCGCGCAATGTGGCGCGGGCAAGGGCGCTGCAAAGGATAAAGGCCGAAAAGGAGAAG
CAGACGCAGGCACAGAGCGAGGCTGCTCAAAAAAAAGAGGCCAAGGCTCAAGCACTAGTCAAGGCGCAGGAGGAG
AAGCGCAAGATTACCAACCCCAAGATTGCAAAGTACGAAAAGCAGGCGCAGTCCAAGCTCGAGGCACCGCCGGCC
ATGAGGACGTGGGAGCGCATTCTCCCCTCGGCAACGGTTGTGGCACTGGTGCTGGGCTTTGCAGCAGCCGTGGGA
GCCGTGTACGAGGAGCCGGGGCCGCGCTACCGCCTCATTCCCAACGTGTCAACGGCAAACGCCACGGTGGGCTGC
ATTGTTGCAATCAATGCCCTCGTCTTGCTCGCGTGGCGGGTGCCGCAGCTGTGGCGCTTTTTGAACCGCTGGATG
ATTTTCATTGTTGCCACGCCGCGGCCCGTGACGCTCTTTACCGCAATCTTTTCCCACCAGCGGCTGGGCCACATG
CTCATCAACATGACGGTGCTGTCGCTCATTGGGCCGCGGCTGCACGACGACGTTGGCCGGGCAAACTTTGTGGCG
CTCTACCTTGCCAGCGGCTCCATTGGCTTCCTGGGCGCCCTCACCGTCTACACCCTCAAGGGCATGCTAAACGTC
ACCTCCATGGGCGCGTCGGCCGCGGCGCTGGGCGTCACGGCAGCCTACTTTTGGCACCACCGGCTCGACGGCTTC
AAGATTATGGAGCTGCCGCCGGGCGAGGGCGTCCACGGCATTATATTCCTGGCCGTCATGCTGGCGCTGCATCTG
GGCAGTCTCAAGTCGTGGATGCGGCGCAAGCTCGACGTGGTGTCGCATCGTGCCGGCATGGCGGCAGGCATCTTG
GCCATGGCGCTGCTGGAGCTGGGGCGGCGTGGGGGCGGCGGCGCGAGCACGTCACCCGCGAGGCAGGGAGGGGCG
GTGGCGTCGCCAATGCAGGCGTCATGA
Gene >OphauB2|3973
ATGAGCCTTTTTCTCAGCTACCGCGCCCATGGCTCACGGGCATGGTTGGGGGCTGCAGCGCGTGGTTTTTTGCGC
TGGGAGGCGCAAGCAGATGGCTGTACTAGAGCACGCGTTTCGACAGCTCTCGCCTCGACAGCACACGTTTCGACA
GCACAATTGTCAAGCTGCCTGCCTCGAAATAGACCGACTGGACTCGTCCACCAAAAAGGCAGCATCGCTTCACAG
CTTGCAAGCAAAGCGCACCGGCGCACCGGCTGTCGGACATTTTTCTCTCGCATAATCACCGACTATATACAGCTA
CCGCCCAACTACCGCGATGCCCAAGGCCTTGAGTTTAGCCGCAAGCAACTATCGCAGGAGCAGGTTTACAAGATT
TTTGGCAAGGAGCTGGACGCGGTCCAGGCAAATCGCCTGCTGCGCATTATGCACGGGAGAAGAGTTGCTGGCACG
CTGCAAGATCCAGTCTTGGCGGTGCATACAAAGCAGTATACGAAGGAACAAATGGACAAGGCTCTAGCCTACTTG
CGGGAAACGGTCTATGTGCCGGAAATCATAAACGCTGGCTTGCGGGCCGAGGACGAGCTTGCAGACATACAAGAC
ATCATGGCGGACAAGGAGGAGCAGCGGATACAAAGGGCCAAGGAAAAGGCCGAGGCAGGGGACCAAGAGGACGAC
GCCCCCGTGATAACAAGGAGGAAGAAGGAAGACTACGAGGAGTTTTACAAGCCGGATCCAATATATGGCCCGAGC
AAGCTGGATGAGATTCGGGCGCGCAATGTGGCGCGGGCAAGGGCGCTGCAAAGGATAAAGGCCGAAAAGGAGAAG
CAGACGCAGGCACAGAGCGAGGCTGCTCAAAAAAAAGAGGCCAAGGCTCAAGCACTAGTCAAGGCGCAGGAGGAG
AAGCGCAAGATTACCAACCCCAAGATTGCAAAGTACGAAAAGCAGGCGCAGTCCAAGCTCGAGGCACCGCCGGCC
ATGAGGACGTGGGAGCGCATTCTCCCCTCGGCAACGGTTGTGGCACTGGTGCTGGGCTTTGCAGCAGCCGTGGGA
GCCGTGTACGAGGAGCCGGGGCCGCGCTACCGCCTCATTCCCAACGTGTCAACGGCAAACGCCACGGTGGGCTGC
ATTGTTGCAATCAATGCCCTCGTCTTGCTCGCGTGGCGGGTGCCGCAGCTGTGGCGCTTTTTGAACCGCTGGATG
ATTTTCATTGTTGCCACGCCGCGGCCCGTGACGCTCTTTACCGCAATCTTTTCCCACCAGCGGCTGGGCCACATG
CTCATCAACATGACGGTGCTGTCGCTCATTGGGCCGCGGCTGCACGACGACGTTGGCCGGGCAAACTTTGTGGCG
CTCTACCTTGCCAGCGGCTCCATTGGCTTCCTGGGCGCCCTCACCGTCTACACCCTCAAGGGCATGCTAAACGTC
ACCTCCATGGGCGCGTCGGCCGCGGCGCTGGGCGTCACGGCAGCCTACTTTTGGCACCACCGGCTCGACGGCTTC
AAGATTATGGAGCTGCCGCCGGGCGAGGGCGTCCACGGCATTATATTCCTGGCCGTCATGCTGGCGCTGCATCTG
GGCAGTCTCAAGTCGTGGATGCGGCGCAAGCTCGACGTGGTGTCGCATCGTGCCGGCATGGCGGCAGGCATCTTG
GCCATGGCGCTGCTGGAGCTGGGGCGGCGTGGGGGCGGCGGCGCGAGCACGTCACCCGCGAGGCAGGGAGGGGCG
GTGGCGTCGCCAATGCAGGCGTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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