Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3963
Gene name
LocationContig_257:3108..3562
Strand+
Gene length (bp)454
Transcript length (bp)321
Coding sequence length (bp)321
Protein length (aa) 107

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03647 Tmemb_14 Transmembrane proteins 14C 1.1E-23 9 96

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P47131|YJ55_YEAST TMEM14 protein homolog YJR085C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR085C PE=1 SV=1 5 104 2.0E-18
sp|Q75JB5|TM14_DICDI Transmembrane protein 14 homolog OS=Dictyostelium discoideum GN=DDB_G0271790 PE=3 SV=1 2 99 1.0E-14
sp|Q9P7G3|YK45_SCHPO TMEM14 protein homolog P14E8.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP14E8.05c PE=3 SV=1 6 103 8.0E-11
sp|Q0P436|TM14C_DANRE Transmembrane protein 14C OS=Danio rerio GN=tmem14c PE=3 SV=1 5 87 1.0E-06

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 7 25 18
2 29 48 19
3 83 102 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3963
MSQQLELSSYVLALLTAGGGIMGYVRTRSVPSLVAGSAVGMLYGIGGYRLQNRQPYGIELSLLASLVLGGSSVPR
AIRLRKPVPVLLSVLSAFGILTFGNAYRQKL*
Coding >OphauB2|3963
ATGTCGCAGCAGCTCGAGCTCTCGTCCTACGTCCTCGCCCTGCTGACAGCCGGCGGCGGCATCATGGGCTATGTG
AGGACACGATCAGTGCCATCCCTCGTTGCTGGATCTGCCGTTGGCATGCTCTATGGCATCGGTGGTTATCGCCTG
CAGAACCGCCAGCCGTACGGTATTGAGCTCAGTCTCCTTGCCTCTCTTGTCCTCGGCGGCTCGTCTGTTCCTCGC
GCTATTCGTTTGCGGAAACCTGTGCCCGTCTTGCTCAGTGTCCTGTCGGCCTTTGGCATACTCACGTTTGGCAAT
GCCTACCGGCAGAAGCTCTAG
Transcript >OphauB2|3963
ATGTCGCAGCAGCTCGAGCTCTCGTCCTACGTCCTCGCCCTGCTGACAGCCGGCGGCGGCATCATGGGCTATGTG
AGGACACGATCAGTGCCATCCCTCGTTGCTGGATCTGCCGTTGGCATGCTCTATGGCATCGGTGGTTATCGCCTG
CAGAACCGCCAGCCGTACGGTATTGAGCTCAGTCTCCTTGCCTCTCTTGTCCTCGGCGGCTCGTCTGTTCCTCGC
GCTATTCGTTTGCGGAAACCTGTGCCCGTCTTGCTCAGTGTCCTGTCGGCCTTTGGCATACTCACGTTTGGCAAT
GCCTACCGGCAGAAGCTCTAG
Gene >OphauB2|3963
ATGGTAGCCAGCCCAAGTATGCCAAGCAGCATGACGCGCCCGCACTAACCCAGATGAACAGTCGCAGCAGCTCGA
GCTCTCGTCCTACGTCCTCGCCCTGCTGACAGCCGGCGGCGGCATCATGGGCTATGTGAGGACACGATCAGTGCC
ATCCCTCGTTGCTGGATCTGCCGTTGGCATGCTCTGTACGTGCCTTGCCCCAAGCCTGGCCATGTTGCTTAACAA
TAGCGGCTAATGGTGTTTGGATCAAAACAATGTAGATGGCATCGGTGGTTATCGCCTGCAGAACCGCCAGCCGTA
CGGTATTGAGCTCAGTCTCCTTGCCTCTCTTGTCCTCGGCGGCTCGTCTGTTCCTCGCGCTATTCGTTTGCGGAA
ACCTGTGCCCGTCTTGCTCAGTGTCCTGTCGGCCTTTGGCATACTCACGTTTGGCAATGCCTACCGGCAGAAGCT
CTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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