© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3958 |
| Gene name | |
| Location | Contig_256:8146..9055 |
| Strand | + |
| Gene length (bp) | 909 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01066 | CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase | 4.1E-26 | 45 | 203 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94584|PSS_SCHPO | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pps1 PE=1 SV=2 | 4 | 241 | 4.0E-88 |
| sp|P08456|PSS_YEAST | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHO1 PE=1 SV=3 | 24 | 242 | 9.0E-79 |
| sp|P39823|PSS_BACSU | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Bacillus subtilis (strain 168) GN=pssA PE=3 SV=1 | 46 | 183 | 5.0E-20 |
| sp|Q48269|PSS_HELPY | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=pssA PE=3 SV=2 | 49 | 183 | 9.0E-14 |
| sp|Q9ZM68|PSS_HELPJ | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=pssA PE=3 SV=1 | 49 | 183 | 5.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94584|PSS_SCHPO | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pps1 PE=1 SV=2 | 4 | 241 | 4.0E-88 |
| sp|P08456|PSS_YEAST | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHO1 PE=1 SV=3 | 24 | 242 | 9.0E-79 |
| sp|P39823|PSS_BACSU | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Bacillus subtilis (strain 168) GN=pssA PE=3 SV=1 | 46 | 183 | 5.0E-20 |
| sp|Q48269|PSS_HELPY | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=pssA PE=3 SV=2 | 49 | 183 | 9.0E-14 |
| sp|Q9ZM68|PSS_HELPJ | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=pssA PE=3 SV=1 | 49 | 183 | 5.0E-13 |
| sp|O27106|ARSS_METTH | Archaetidylserine synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1027 PE=1 SV=1 | 45 | 185 | 9.0E-13 |
| sp|Q58609|PSS_METJA | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pssA PE=3 SV=1 | 39 | 205 | 3.0E-12 |
| sp|Q9ZBM2|PSS_MYCLE | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium leprae (strain TN) GN=pssA PE=3 SV=1 | 94 | 202 | 5.0E-12 |
| sp|P9WPG1|PSS_MYCTU | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=pssA PE=3 SV=1 | 94 | 203 | 5.0E-11 |
| sp|P9WPG0|PSS_MYCTO | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=pssA PE=3 SV=1 | 94 | 203 | 8.0E-10 |
| sp|P59949|PSS_MYCBO | CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pssA PE=3 SV=1 | 94 | 203 | 8.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | Yes |
| GO:0008654 | phospholipid biosynthetic process | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0016740 | transferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 77 | 96 | 19 |
| 3 | 117 | 139 | 22 |
| 4 | 209 | 231 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3958 MSKRSSTAAAMSAKQDGGSSNLPAMDKQRSLLSADVGHFSLVRAMHLADLITLMNGFCGVMSIFSSLRYCLGDPD SVADAWLALAFLPFGLFFDFFDGRVARWRNKSSLMGQELDSLADLISFGVAPAMVAFSLGLRSILDTLGLCFFVL CGLARLARFNVTVSVLPKDASGKSKFFEGTPIPTSLGLDALMAFWLYNGWFLNHLPLGIWFNASMLEFHPIVLVF IVHGCLMTSRTIRIPKP* |
| Coding | >OphauB2|3958 ATGTCAAAGAGGAGCAGCACGGCGGCGGCCATGTCGGCCAAGCAAGACGGCGGTTCAAGCAATTTACCCGCCATG GACAAGCAGAGAAGCTTGTTGTCAGCCGACGTGGGCCATTTCTCTCTCGTACGAGCTATGCACCTGGCCGATTTG ATTACTTTGATGAATGGCTTTTGCGGCGTCATGTCCATATTCTCGTCGTTGCGGTACTGTCTTGGTGATCCCGAC TCGGTGGCAGACGCGTGGCTCGCGCTCGCCTTTCTCCCCTTTGGCCTCTTTTTCGACTTTTTCGACGGCCGAGTT GCTCGATGGAGAAACAAGAGTAGCCTCATGGGGCAGGAGCTGGACTCTTTGGCTGATCTGATTTCGTTTGGCGTC GCCCCTGCAATGGTGGCCTTCTCACTCGGCCTACGCTCCATTCTCGACACTCTTGGCCTCTGCTTCTTCGTTCTC TGCGGCCTCGCCCGTCTTGCGCGCTTCAACGTGACCGTCTCAGTGCTACCCAAGGACGCCAGCGGCAAGAGCAAA TTCTTCGAGGGCACCCCAATCCCCACCTCGCTCGGCCTCGATGCCCTCATGGCTTTTTGGCTCTATAATGGCTGG TTTCTTAACCACTTGCCTCTGGGAATTTGGTTCAATGCTTCCATGCTTGAGTTTCACCCCATAGTTCTTGTCTTC ATTGTCCATGGGTGCCTCATGACAAGTAGGACAATCCGCATTCCCAAGCCCTGA |
| Transcript | >OphauB2|3958 ATGTCAAAGAGGAGCAGCACGGCGGCGGCCATGTCGGCCAAGCAAGACGGCGGTTCAAGCAATTTACCCGCCATG GACAAGCAGAGAAGCTTGTTGTCAGCCGACGTGGGCCATTTCTCTCTCGTACGAGCTATGCACCTGGCCGATTTG ATTACTTTGATGAATGGCTTTTGCGGCGTCATGTCCATATTCTCGTCGTTGCGGTACTGTCTTGGTGATCCCGAC TCGGTGGCAGACGCGTGGCTCGCGCTCGCCTTTCTCCCCTTTGGCCTCTTTTTCGACTTTTTCGACGGCCGAGTT GCTCGATGGAGAAACAAGAGTAGCCTCATGGGGCAGGAGCTGGACTCTTTGGCTGATCTGATTTCGTTTGGCGTC GCCCCTGCAATGGTGGCCTTCTCACTCGGCCTACGCTCCATTCTCGACACTCTTGGCCTCTGCTTCTTCGTTCTC TGCGGCCTCGCCCGTCTTGCGCGCTTCAACGTGACCGTCTCAGTGCTACCCAAGGACGCCAGCGGCAAGAGCAAA TTCTTCGAGGGCACCCCAATCCCCACCTCGCTCGGCCTCGATGCCCTCATGGCTTTTTGGCTCTATAATGGCTGG TTTCTTAACCACTTGCCTCTGGGAATTTGGTTCAATGCTTCCATGCTTGAGTTTCACCCCATAGTTCTTGTCTTC ATTGTCCATGGGTGCCTCATGACAAGTAGGACAATCCGCATTCCCAAGCCCTGA |
| Gene | >OphauB2|3958 ATGTCAAAGAGGAGCAGCACGGCGGCGGCCATGTCGGCCAAGCAAGACGGCGGTTCAAGCAATTTACCCGGTTCG TCTCTTTGGTCATGAGCATCGCCTTTGCCCTTGACTTGATGTGCTAAATTCTCAGACAGCCATGGACAAGCAGAG AAGCTTGTTGTCAGCCGACGTGGGCCATTTCTCTCTCGTACGAGCTATGCACCTGGCCGATTTGATTACTTTGAT GAATGGTATGTCTGCCATGGCCGTCGGGGTTAGTATCAAATGACTGACCGAGTCTGCGCATGTCGCTTGTTAGGC TTTTGCGGCGTCATGTCCATATTCTCGTCGTTGCGGTACTGTCTTGGTGATCCCGACTCGGTGGCAGACGCGTGG CTCGCGCTCGCCTTTCTCCCCTTTGGCCTCTTTTTCGACTTTTTCGACGGCCGAGTTGCTCGATGGAGAAACAAG AGTAGCCTCATGGGGCAGGAGCTGGACTCTTTGGCTGATCTGGTATTTTGCTCCTCTTCAAGTTGCGCCGCAAAA GGCTGACGAGACTAGATTTCGTTTGGCGTCGCCCCTGCAATGGTGGCCTTCTCACTCGGCCTACGCTCCATTCTC GACACTCTTGGCCTCTGCTTCTTCGTTCTCTGCGGCCTCGCCCGTCTTGCGCGCTTCAACGTGACCGTCTCAGTG CTACCCAAGGACGCCAGCGGCAAGAGCAAATTCTTCGAGGGCACCCCAATCCCCACCTCGCTCGGCCTCGATGCC CTCATGGCTTTTTGGCTCTATAATGGCTGGTTTCTTAACCACTTGCCTCTGGGAATTTGGTTCAATGCTTCCATG CTTGAGTTTCACCCCATAGTTCTTGTCTTCATTGTCCATGGGTGCCTCATGACAAGTAGGACAATCCGCATTCCC AAGCCCTGA |