© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3937 |
| Gene name | |
| Location | Contig_251:4601..5856 |
| Strand | + |
| Gene length (bp) | 1255 |
| Transcript length (bp) | 1140 |
| Coding sequence length (bp) | 1140 |
| Protein length (aa) | 380 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05181 | XPA_C | XPA protein C-terminus | 1.9E-25 | 224 | 274 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53709|RAD14_CANAL | DNA repair protein RAD14 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD14 PE=3 SV=2 | 27 | 377 | 4.0E-55 |
| sp|O59753|RAD14_SCHPO | DNA repair protein rad14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp14 PE=1 SV=1 | 114 | 379 | 9.0E-49 |
| sp|P28519|RAD14_YEAST | DNA repair protein RAD14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD14 PE=1 SV=2 | 24 | 379 | 1.0E-41 |
| sp|P28518|XPA_DROME | DNA repair protein complementing XP-A cells homolog OS=Drosophila melanogaster GN=Xpac PE=2 SV=3 | 189 | 370 | 7.0E-19 |
| sp|P27088|XPA_XENLA | DNA repair protein complementing XP-A cells homolog OS=Xenopus laevis GN=xpa PE=2 SV=1 | 193 | 374 | 2.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53709|RAD14_CANAL | DNA repair protein RAD14 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD14 PE=3 SV=2 | 27 | 377 | 4.0E-55 |
| sp|O59753|RAD14_SCHPO | DNA repair protein rad14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp14 PE=1 SV=1 | 114 | 379 | 9.0E-49 |
| sp|P28519|RAD14_YEAST | DNA repair protein RAD14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD14 PE=1 SV=2 | 24 | 379 | 1.0E-41 |
| sp|P28518|XPA_DROME | DNA repair protein complementing XP-A cells homolog OS=Drosophila melanogaster GN=Xpac PE=2 SV=3 | 189 | 370 | 7.0E-19 |
| sp|P27088|XPA_XENLA | DNA repair protein complementing XP-A cells homolog OS=Xenopus laevis GN=xpa PE=2 SV=1 | 193 | 374 | 2.0E-18 |
| sp|P27089|XPA_CHICK | DNA repair protein complementing XP-A cells homolog OS=Gallus gallus GN=XPA PE=2 SV=1 | 193 | 374 | 4.0E-18 |
| sp|P23025|XPA_HUMAN | DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1 | 193 | 374 | 3.0E-16 |
| sp|Q64267|XPA_MOUSE | DNA repair protein complementing XP-A cells homolog OS=Mus musculus GN=Xpa PE=1 SV=2 | 193 | 374 | 7.0E-16 |
| sp|Q64029|XPA_CRIGR | DNA repair protein complementing XP-A cells homolog (Fragment) OS=Cricetulus griseus GN=XPA PE=2 SV=1 | 209 | 297 | 2.0E-10 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3937 MEPSSTPPPSKASPASEPPSRSPQVNQRIAENRLRAKAIREQREAEQRRSHTLPHVPKSASGFVPTDSIHVSKPA NAKRPYDAALGVAESNRHGSNQSSQDAHRLPPAPKFAKFVDYNMSSMTDTKGGFLSAEDDPHNRAFATAKPDDGQ RPNNMTVQEWERLRLLRNLRRQKAGPFEPALTVLSDESQRKPCRECRSLEIDFVWEEVFHICVCTKCKESMPQKY SLLTKTECKEDYLLTDAELRDPQLLPHLSRPNPHKSHWHDMMLFLRFQVEEYAIKTKWGSAEALDAEYERRETQK KARKEAKFKSKLLDLKRKTRTDAFRRQAGTLGKTGASRFGDTVGASRHLHEWGRTVENHQGITVKTCIECGMEVE ELEL* |
| Coding | >OphauB2|3937 ATGGAACCCTCGTCCACTCCGCCGCCGTCCAAGGCGTCCCCTGCCTCTGAGCCGCCGTCACGCTCTCCACAAGTC AATCAACGCATAGCCGAAAACCGCCTCCGCGCAAAGGCCATCCGCGAGCAGCGCGAAGCCGAGCAACGCCGCTCC CATACACTGCCCCATGTCCCAAAGTCTGCTTCAGGCTTCGTCCCAACAGACTCGATACACGTCTCCAAGCCCGCC AACGCAAAGCGGCCCTACGACGCTGCCCTCGGCGTCGCCGAATCCAACCGCCATGGAAGCAACCAATCCTCGCAA GACGCGCATCGTCTCCCGCCTGCGCCCAAGTTTGCAAAGTTTGTGGATTACAATATGAGCTCCATGACGGACACA AAAGGTGGCTTCCTCTCCGCTGAGGATGATCCGCATAACCGCGCCTTCGCTACCGCCAAGCCCGACGACGGACAG CGGCCCAACAACATGACGGTCCAAGAGTGGGAGCGACTGCGCCTCTTGCGCAATCTGCGTCGCCAAAAGGCTGGT CCTTTTGAGCCCGCTCTCACCGTCTTGAGCGACGAGAGCCAGCGCAAGCCATGTCGCGAGTGTAGGAGCCTTGAA ATCGACTTTGTCTGGGAAGAAGTCTTCCACATTTGTGTCTGCACCAAGTGCAAGGAGAGCATGCCCCAAAAGTAC TCTCTACTCACCAAGACGGAGTGCAAAGAGGATTACCTCTTGACAGATGCCGAGTTACGCGACCCCCAACTTCTT CCCCATCTGTCACGCCCAAATCCACACAAGTCCCACTGGCACGACATGATGCTCTTTCTCCGTTTTCAAGTCGAG GAATACGCCATCAAGACCAAGTGGGGTTCCGCCGAGGCTCTCGACGCCGAGTACGAGCGTCGCGAGACGCAGAAA AAAGCACGCAAGGAGGCAAAGTTCAAGTCTAAACTACTAGACCTCAAGCGCAAGACGCGTACCGACGCCTTTCGC CGCCAGGCTGGCACCCTCGGCAAAACGGGTGCCAGCCGCTTTGGAGACACTGTTGGCGCTTCCAGGCACCTTCAT GAGTGGGGGCGCACCGTGGAGAATCACCAAGGCATCACGGTAAAGACATGTATTGAGTGCGGCATGGAGGTTGAA GAGCTTGAATTATAA |
| Transcript | >OphauB2|3937 ATGGAACCCTCGTCCACTCCGCCGCCGTCCAAGGCGTCCCCTGCCTCTGAGCCGCCGTCACGCTCTCCACAAGTC AATCAACGCATAGCCGAAAACCGCCTCCGCGCAAAGGCCATCCGCGAGCAGCGCGAAGCCGAGCAACGCCGCTCC CATACACTGCCCCATGTCCCAAAGTCTGCTTCAGGCTTCGTCCCAACAGACTCGATACACGTCTCCAAGCCCGCC AACGCAAAGCGGCCCTACGACGCTGCCCTCGGCGTCGCCGAATCCAACCGCCATGGAAGCAACCAATCCTCGCAA GACGCGCATCGTCTCCCGCCTGCGCCCAAGTTTGCAAAGTTTGTGGATTACAATATGAGCTCCATGACGGACACA AAAGGTGGCTTCCTCTCCGCTGAGGATGATCCGCATAACCGCGCCTTCGCTACCGCCAAGCCCGACGACGGACAG CGGCCCAACAACATGACGGTCCAAGAGTGGGAGCGACTGCGCCTCTTGCGCAATCTGCGTCGCCAAAAGGCTGGT CCTTTTGAGCCCGCTCTCACCGTCTTGAGCGACGAGAGCCAGCGCAAGCCATGTCGCGAGTGTAGGAGCCTTGAA ATCGACTTTGTCTGGGAAGAAGTCTTCCACATTTGTGTCTGCACCAAGTGCAAGGAGAGCATGCCCCAAAAGTAC TCTCTACTCACCAAGACGGAGTGCAAAGAGGATTACCTCTTGACAGATGCCGAGTTACGCGACCCCCAACTTCTT CCCCATCTGTCACGCCCAAATCCACACAAGTCCCACTGGCACGACATGATGCTCTTTCTCCGTTTTCAAGTCGAG GAATACGCCATCAAGACCAAGTGGGGTTCCGCCGAGGCTCTCGACGCCGAGTACGAGCGTCGCGAGACGCAGAAA AAAGCACGCAAGGAGGCAAAGTTCAAGTCTAAACTACTAGACCTCAAGCGCAAGACGCGTACCGACGCCTTTCGC CGCCAGGCTGGCACCCTCGGCAAAACGGGTGCCAGCCGCTTTGGAGACACTGTTGGCGCTTCCAGGCACCTTCAT GAGTGGGGGCGCACCGTGGAGAATCACCAAGGCATCACGGTAAAGACATGTATTGAGTGCGGCATGGAGGTTGAA GAGCTTGAATTATAA |
| Gene | >OphauB2|3937 ATGGAACCCTCGTCCACTCCGCCGCCGTCCAAGGCGTCCCCTGCCTCTGAGCCGCCGTCACGCTCTCCACAAGTC AATCAACGCATAGTAGGCAGCCCTAGCCAAGTTTGAATGAGGCAAGCATCAATGCTCACTCCAACCCACAGGCCG AAAACCGCCTCCGCGCAAAGGCCATCCGCGAGCAGCGCGAAGCCGAGCAACGCCGCTCCCATACACTGCCCCATG TCCCAAAGTCTGCTTCAGGCTTCGTCCCAACAGACTCGATACACGTCTCCAAGCCCGCCAACGCAAAGCGGCCCT ACGACGCTGCCCTCGGCGTCGCCGAATCCAACCGCCATGGAAGCAACCAATCCTCGCAAGACGCGCATCGTCTCC CGCCTGCGCCCAAGTTTGCAAAGTTTGTGGATTACAATATGAGCTCCATGACGGACACAAAAGGTGGCTTCCTCT CCGCTGAGGATGATCCGCATAACCGCGCCTTCGCTACCGCCAAGCCCGACGACGGACAGCGGCCCAACAACATGA CGGTCCAAGAGTGGGAGCGACTGCGCCTCTTGCGCAATCTGCGTCGCCAAAAGGCTGGTCCTTTTGAGCCCGCTC TCACCGTCTTGAGCGACGAGAGCCAGCGCAAGCCATGTCGCGAGTGTAGGAGCCTTGAAATCGACTTTGTCTGGG AAGAAGTCTTCCACATTTGTGTCTGCACCAAGTGCAAGGAGAGCATGCCCCAAAAGTACTCTCTACTCACCAAGA CGGAGTGCAAAGAGGATTACCTCTTGACAGATGGTACGCCCCTTTTGTCACGCCATGATGCAAACACCAGCAGCT CTGACACGTTGCAGCCGAGTTACGCGACCCCCAACTTCTTCCCCATCTGTCACGCCCAAATCCACACAAGTCCCA CTGGCACGACATGATGCTCTTTCTCCGTTTTCAAGTCGAGGAATACGCCATCAAGACCAAGTGGGGTTCCGCCGA GGCTCTCGACGCCGAGTACGAGCGTCGCGAGACGCAGAAAAAAGCACGCAAGGAGGCAAAGTTCAAGTCTAAACT ACTAGACCTCAAGCGCAAGACGCGTACCGACGCCTTTCGCCGCCAGGCTGGCACCCTCGGCAAAACGGGTGCCAG CCGCTTTGGAGACACTGTTGGCGCTTCCAGGCACCTTCATGAGTGGGGGCGCACCGTGGAGAATCACCAAGGCAT CACGGTAAAGACATGTATTGAGTGCGGCATGGAGGTTGAAGAGCTTGAATTATAA |