© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|3932 |
| Gene name | |
| Location | Contig_250:6344..8410 |
| Strand | - |
| Gene length (bp) | 2066 |
| Transcript length (bp) | 1707 |
| Coding sequence length (bp) | 1707 |
| Protein length (aa) | 569 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-05 | 243 | 309 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-12 | 362 | 433 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.7E-06 | 493 | 553 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36629|U2AF2_SCHPO | Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1 | 163 | 568 | 1.0E-72 |
| sp|Q24562|U2AF2_DROME | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1 | 172 | 558 | 8.0E-67 |
| sp|P26368|U2AF2_HUMAN | Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4 | 171 | 557 | 6.0E-59 |
| sp|P26369|U2AF2_MOUSE | Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3 | 171 | 557 | 7.0E-59 |
| sp|P90978|U2AF2_CAEEL | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=2 SV=2 | 149 | 558 | 3.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36629|U2AF2_SCHPO | Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1 | 163 | 568 | 1.0E-72 |
| sp|Q24562|U2AF2_DROME | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1 | 172 | 558 | 8.0E-67 |
| sp|P26368|U2AF2_HUMAN | Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4 | 171 | 557 | 6.0E-59 |
| sp|P26369|U2AF2_MOUSE | Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3 | 171 | 557 | 7.0E-59 |
| sp|P90978|U2AF2_CAEEL | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=2 SV=2 | 149 | 558 | 3.0E-58 |
| sp|P90727|U2AF2_CAEBR | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2 | 179 | 558 | 6.0E-58 |
| sp|O23212|U2A2A_ARATH | Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2 | 173 | 564 | 1.0E-40 |
| sp|Q2R0Q1|U2A2A_ORYSJ | Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2 | 196 | 563 | 3.0E-40 |
| sp|Q2QKB4|U2A2B_WHEAT | Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1 | 172 | 563 | 9.0E-40 |
| sp|Q9ZR39|U2A2A_NICPL | Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1 | 196 | 563 | 2.0E-39 |
| sp|Q8L716|U2A2B_ARATH | Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2 | 194 | 563 | 4.0E-39 |
| sp|Q2QZL4|U2A2B_ORYSJ | Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=3 SV=2 | 176 | 563 | 6.0E-38 |
| sp|Q9ZR40|U2A2B_NICPL | Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1 | 176 | 522 | 6.0E-24 |
| sp|P97343|UHMK1_MOUSE | Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1 SV=3 | 470 | 564 | 1.0E-10 |
| sp|Q63285|UHMK1_RAT | Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1 PE=1 SV=1 | 470 | 564 | 1.0E-10 |
| sp|O13845|RSD1_SCHPO | RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsd1 PE=1 SV=2 | 467 | 563 | 1.0E-08 |
| sp|P42698|DR111_ARATH | DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2 | 464 | 566 | 4.0E-08 |
| sp|Q15020|SART3_HUMAN | Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo sapiens GN=SART3 PE=1 SV=1 | 236 | 434 | 8.0E-08 |
| sp|Q5REG1|SART3_PONAB | Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo abelii GN=SART3 PE=2 SV=1 | 236 | 434 | 2.0E-07 |
| sp|F1QBY1|NIPLB_DANRE | Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1 | 30 | 159 | 7.0E-07 |
| sp|F1QBY1|NIPLB_DANRE | Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1 | 4 | 143 | 2.0E-06 |
| sp|Q06106|MRD1_YEAST | Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1 SV=1 | 216 | 557 | 2.0E-06 |
| sp|Q9UHX1|PUF60_HUMAN | Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1 | 466 | 564 | 6.0E-06 |
| sp|Q5R469|PUF60_PONAB | Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1 | 466 | 564 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3932 MNGDSYSARGADGRRGREYLPNRGDRDERRDRFRDRDRERERDRDRDRDRDRDRDRDRDRDRDRDRQRDRRRSRS PDHRLHRRGGDADADAYSSSRTHRDREREDRYAGRDRRGEREWDRDRGSSRRDARRDDEERPPRRDRDLQEQPRR SPTPVKREPTPDLTDIIPILERKRRLTQWDIKPPGYELVTAEQAKLSGMFPLPGAPRQQAVDPTRLQAFMNQPGA QVTSAGLKASNSRQSKRLIVSNLPPDTTEESLVAFFNLQLNDLNIIESTDSCAYCQFSPDGAFAVLEFKNAADAT MALALDGISMTAEDVANGSGRPDASGLVIRRPKDYVMPAVPDDMMYDMDVVSNTVPDTVHKLCISNLPTYLTEEQ VMELLNAFGKPKAFVLVKDRNADESRGIAFVEYFEPTSANEPALSTLNGMDVKGNKLKANKASFGFTQVANFDVG ITAISGLASQTSGNTEKGRVLQLLNMVKPEELMDNDEYQEICDDVREECVKFGTLLDLKVPRPSGGSRQSAGVGK IFVKFESSDSAQNALTALAGRKFADRTVVATYFPEENFEVNAW* |
| Coding | >OphauB2|3932 ATGAACGGCGACAGCTACTCAGCTCGAGGTGCAGACGGGCGGCGGGGTCGAGAGTATCTCCCTAATCGAGGTGAT CGTGACGAGCGTCGAGACCGTTTCCGAGATCGGGACCGAGAGCGTGAGCGTGACCGCGATCGTGACCGCGACCGC GACCGCGACCGTGACCGTGACCGTGATCGTGATCGTGATCGTGACCGTCAGCGTGACCGCAGACGCTCTAGATCA CCTGATCATCGTCTCCACCGTCGCGGCGGAGATGCCGATGCCGATGCCTACTCGTCGAGCCGGACTCATCGTGAC AGAGAGCGCGAAGACCGCTACGCCGGCCGTGACCGCCGAGGCGAGCGTGAGTGGGATCGCGACCGAGGCTCTTCT CGCAGAGACGCTCGGCGCGATGACGAGGAAAGGCCACCCCGACGCGACAGGGACTTACAGGAGCAGCCTCGTAGA AGTCCGACTCCCGTCAAGCGCGAGCCAACGCCTGATCTTACCGATATTATTCCCATATTGGAGCGTAAAAGACGA CTGACTCAATGGGACATCAAACCACCGGGCTATGAATTGGTCACGGCTGAACAGGCAAAACTTTCTGGAATGTTT CCATTGCCTGGGGCTCCTCGCCAACAAGCCGTTGATCCGACTCGACTCCAAGCCTTTATGAATCAGCCTGGGGCA CAGGTGACAAGTGCAGGTCTCAAGGCTAGCAACTCGCGACAATCGAAGCGTCTCATCGTCTCAAACTTGCCGCCT GATACAACCGAGGAGAGCCTTGTCGCCTTCTTCAACCTGCAGCTCAATGACCTCAATATCATCGAGTCCACTGAC TCTTGTGCTTATTGTCAGTTTTCCCCAGATGGTGCTTTTGCCGTCTTGGAATTCAAGAACGCTGCAGACGCTACC ATGGCTCTCGCTCTTGACGGCATTTCAATGACTGCAGAGGACGTTGCAAATGGCTCAGGCAGACCAGATGCATCC GGTCTCGTCATTCGACGACCAAAGGACTATGTCATGCCAGCTGTTCCCGACGACATGATGTATGACATGGACGTT GTCTCAAACACCGTTCCCGACACCGTGCATAAACTTTGCATCAGCAACCTTCCCACGTACCTTACCGAGGAGCAG GTTATGGAACTACTTAATGCATTTGGTAAACCCAAGGCTTTTGTCCTGGTCAAAGACCGCAATGCCGATGAATCG CGGGGTATTGCTTTCGTCGAATACTTTGAACCGACCTCAGCAAATGAGCCTGCCCTCAGTACCCTAAACGGCATG GATGTCAAGGGCAACAAGCTCAAGGCAAACAAAGCCAGCTTTGGATTCACGCAGGTTGCCAACTTTGATGTGGGC ATCACAGCCATTAGCGGCCTTGCTTCACAAACATCGGGCAACACGGAGAAGGGACGTGTGCTACAGCTGCTCAAT ATGGTCAAGCCAGAGGAGCTCATGGATAACGACGAATACCAAGAAATTTGCGATGATGTTCGCGAAGAATGTGTC AAGTTTGGCACCTTGTTGGATCTAAAAGTGCCCAGGCCGTCGGGAGGCAGTCGCCAGTCTGCTGGCGTGGGCAAA ATTTTTGTCAAATTTGAATCAAGCGACTCGGCACAGAATGCGCTTACGGCACTGGCTGGCCGCAAATTTGCCGAT CGAACTGTTGTTGCAACTTACTTCCCAGAGGAAAACTTTGAAGTGAACGCCTGGTGA |
| Transcript | >OphauB2|3932 ATGAACGGCGACAGCTACTCAGCTCGAGGTGCAGACGGGCGGCGGGGTCGAGAGTATCTCCCTAATCGAGGTGAT CGTGACGAGCGTCGAGACCGTTTCCGAGATCGGGACCGAGAGCGTGAGCGTGACCGCGATCGTGACCGCGACCGC GACCGCGACCGTGACCGTGACCGTGATCGTGATCGTGATCGTGACCGTCAGCGTGACCGCAGACGCTCTAGATCA CCTGATCATCGTCTCCACCGTCGCGGCGGAGATGCCGATGCCGATGCCTACTCGTCGAGCCGGACTCATCGTGAC AGAGAGCGCGAAGACCGCTACGCCGGCCGTGACCGCCGAGGCGAGCGTGAGTGGGATCGCGACCGAGGCTCTTCT CGCAGAGACGCTCGGCGCGATGACGAGGAAAGGCCACCCCGACGCGACAGGGACTTACAGGAGCAGCCTCGTAGA AGTCCGACTCCCGTCAAGCGCGAGCCAACGCCTGATCTTACCGATATTATTCCCATATTGGAGCGTAAAAGACGA CTGACTCAATGGGACATCAAACCACCGGGCTATGAATTGGTCACGGCTGAACAGGCAAAACTTTCTGGAATGTTT CCATTGCCTGGGGCTCCTCGCCAACAAGCCGTTGATCCGACTCGACTCCAAGCCTTTATGAATCAGCCTGGGGCA CAGGTGACAAGTGCAGGTCTCAAGGCTAGCAACTCGCGACAATCGAAGCGTCTCATCGTCTCAAACTTGCCGCCT GATACAACCGAGGAGAGCCTTGTCGCCTTCTTCAACCTGCAGCTCAATGACCTCAATATCATCGAGTCCACTGAC TCTTGTGCTTATTGTCAGTTTTCCCCAGATGGTGCTTTTGCCGTCTTGGAATTCAAGAACGCTGCAGACGCTACC ATGGCTCTCGCTCTTGACGGCATTTCAATGACTGCAGAGGACGTTGCAAATGGCTCAGGCAGACCAGATGCATCC GGTCTCGTCATTCGACGACCAAAGGACTATGTCATGCCAGCTGTTCCCGACGACATGATGTATGACATGGACGTT GTCTCAAACACCGTTCCCGACACCGTGCATAAACTTTGCATCAGCAACCTTCCCACGTACCTTACCGAGGAGCAG GTTATGGAACTACTTAATGCATTTGGTAAACCCAAGGCTTTTGTCCTGGTCAAAGACCGCAATGCCGATGAATCG CGGGGTATTGCTTTCGTCGAATACTTTGAACCGACCTCAGCAAATGAGCCTGCCCTCAGTACCCTAAACGGCATG GATGTCAAGGGCAACAAGCTCAAGGCAAACAAAGCCAGCTTTGGATTCACGCAGGTTGCCAACTTTGATGTGGGC ATCACAGCCATTAGCGGCCTTGCTTCACAAACATCGGGCAACACGGAGAAGGGACGTGTGCTACAGCTGCTCAAT ATGGTCAAGCCAGAGGAGCTCATGGATAACGACGAATACCAAGAAATTTGCGATGATGTTCGCGAAGAATGTGTC AAGTTTGGCACCTTGTTGGATCTAAAAGTGCCCAGGCCGTCGGGAGGCAGTCGCCAGTCTGCTGGCGTGGGCAAA ATTTTTGTCAAATTTGAATCAAGCGACTCGGCACAGAATGCGCTTACGGCACTGGCTGGCCGCAAATTTGCCGAT CGAACTGTTGTTGCAACTTACTTCCCAGAGGAAAACTTTGAAGTGAACGCCTGGTGA |
| Gene | >OphauB2|3932 ATGAACGGCGACAGCTACTCAGCTCGAGGTTCGCTAATCATGCCACCATGATGGCCAGGGCAGTCGCTGACTTGA GCGGCTCATCGCTCCAAGCAGGTGCAGACGGGCGGCGGGGTCGAGAGTATCTCGTGAGTATATCGTGCCGCATTC TCCTTGGCTCGAAGCTTCTAACCAGGCTATGCAGCCTAATCGAGGTGATCGTGACGAGCGTCGAGACCGTTTCCG AGATCGGGACCGAGAGCGTGAGCGTGACCGCGATCGTGACCGCGACCGCGACCGCGACCGTGACCGTGACCGTGA TCGTGATCGTGATCGTGACCGTCAGCGTGACCGCAGACGCTCTAGATCACCTGATCATCGTCTCCACCGTCGCGG CGGAGATGCCGATGCCGATGCCTACTCGTCGAGCCGGACTCATCGTGACAGAGAGCGCGAAGACCGCTACGCCGG CCGTGACCGCCGAGGCGAGCGTGAGTGGGATCGCGACCGAGGCTCTTCTCGCAGAGACGCTCGGCGCGATGACGA GGAAAGGCCACCCCGACGCGACAGGGACTTGTACGATGAACGTCGCCGTGCCCCTAGAGAGCGTCGAGATGATGT GGCCTTTGCAAGACAGGAGCAGCCTCGTAGAAGTCCGACTCCCGTCAAGCGCGAGCCAACGCCTGATCTTACCGA TATTATTCCCATATTGGAGCGTAAAAGACGACTGACTCAATGGGACATCAAACCACCGGGCTATGAATTGGTCAC GGCTGAACAGGCAAAACTTTCTGGAATGTTTCCATTGCCTGGGGCTCCTCGCCAACAAGCCGTTGATCCGACTCG ACTCCAAGCCTTTATGAATCAGCCTGGGGCACAGGTGACAAGTGCAGGTCTCAAGGCTAGCAACTCGCGACAATC GAAGCGTCTCATCGTCTCAAACTTGCCGCCTGATACAACCGAGGAGAGCCTTGTCGCCTTCTTCAACCTGCAGCT CAATGACCTCAATATCATCGAGTCCACTGACTCTTGTGCTTATTGTCAGTTTTCCCCAGATGGTGCTTTTGCCGT CTTGGAATTCAAGAACGCTGCAGACGCTACCATGGCTCTCGCTCTTGACGGCATTTCAATGACTGCAGAGGACGT TGCAAATGGCTCAGGCAGACCAGATGCATCCGGTCTCGTCATTCGACGACCAAAGGACTATGTCATGCCAGCTGT TCCCGACGACATGATGTATGACATGGACGTTGTCTCAAACACCGTTCCCGACACCGTGCATAAACTTTGCATCAG CAACCTTCCCACGTACCTTACCGAGGAGCAGGTTATGGAACTACTTAATGCATTTGGTAAACCCAAGGCTTTTGT CCTGGTCAAAGACCGCAATGCCGATGAATCGCGGGTAAGGAAACTAGTCCTTGTTTTGTTTTGAGTCATGATCAA ATTGACTAACTTGTCAGGGTATTGCTTTCGTCGAATACTTTGAACCGACCTCAGCAAATGAGCCTGCCCTCAGTA CCCTAAACGGCATGGATGTCAAGGGCAACAAGCTCAAGGCAAACAAAGCCAGCTTTGGATTCACGCAGGTTGCCA ACTTTGATGTGGGCATCACAGCCATTAGCGGCCTTGCTTCACAAACATCGGGCAACACGGAGAAGGGACGTGTGC TACAGCTGCTCAATATGGTCAAGCCAGAGGAGCTCATGGATAACGACGAATACCAAGGTAGGTCACACAAATGCG TGAGCACTCACCCAGGTTAGTCCACACTTGTGCTAACATCGCAACAGAAATTTGCGATGATGTTCGCGAAGAATG TGTCAAGTTTGGCACCTTGTTGGATCTAAAAGTGCCCAGGCCGTCGGGAGGCAGTCGCCAGTCTGCTGGCGTGGG CAAAATTTTTGTCAAATTTGAATCAAGCGACTCGGCACAGAATGCGCTTACGGCACTGGCTGGCCGCAAATTTGC CGATCGAACTGTTGTTGCAACTTACTTCCCAGAGGTCAGATTGGTATCATGTCACTGAGGCCTTTTTGCGTATGC TAACTCTGGCACAGGAAAACTTTGAAGTGAACGCCTGGTGA |