Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3883
Gene name
LocationContig_25:71721..74150
Strand-
Gene length (bp)2429
Transcript length (bp)2373
Coding sequence length (bp)2373
Protein length (aa) 791

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08608 Wyosine_form Wyosine base formation 4.0E-24 641 709
PF04055 Radical_SAM Radical SAM superfamily 2.0E-21 456 630
PF00258 Flavodoxin_1 Flavodoxin 4.7E-06 116 279

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q08960|TYW1_YEAST S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 114 785 0.0E+00
sp|O59761|TYW1_SCHPO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 85 774 0.0E+00
sp|Q08C92|TYW1_DANRE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 114 774 6.0E-147
sp|Q2KHP8|TYW1_XENLA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 113 774 1.0E-145
sp|Q9NV66|TYW1_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2 83 774 6.0E-144
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Swissprot ID Swissprot Description Start End E-value
sp|Q08960|TYW1_YEAST S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 114 785 0.0E+00
sp|O59761|TYW1_SCHPO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 85 774 0.0E+00
sp|Q08C92|TYW1_DANRE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 114 774 6.0E-147
sp|Q2KHP8|TYW1_XENLA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 113 774 1.0E-145
sp|Q9NV66|TYW1_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2 83 774 6.0E-144
sp|Q8BJM7|TYW1_MOUSE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Mus musculus GN=Tyw1 PE=1 SV=1 105 774 6.0E-144
sp|Q5REF9|TYW1_PONAB S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pongo abelii GN=TYW1 PE=2 SV=1 83 774 6.0E-143
sp|Q8RXN5|TYW1_ARATH S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1 198 786 7.0E-138
sp|Q8H8N3|TYW1_ORYSJ S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativa subsp. japonica GN=TYW1 PE=2 SV=1 198 775 7.0E-137
sp|Q6NUM6|TYW1B_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1B PE=2 SV=3 132 774 5.0E-109
sp|Q9V1F9|TYW1_PYRAB S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=taw1 PE=1 SV=1 382 708 3.0E-55
sp|O59412|TYW1_PYRHO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=taw1 PE=1 SV=1 386 708 8.0E-55
sp|Q57705|TYW1_METJA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=taw1 PE=1 SV=1 404 718 4.0E-42
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0051536 iron-sulfur cluster binding Yes
GO:0010181 FMN binding Yes
GO:0097367 carbohydrate derivative binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0036094 small molecule binding No
GO:0043168 anion binding No
GO:0032553 ribonucleotide binding No
GO:0051540 metal cluster binding No
GO:1901363 heterocyclic compound binding No
GO:1901265 nucleoside phosphate binding No
GO:0097159 organic cyclic compound binding No
GO:0043167 ion binding No
GO:0000166 nucleotide binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 29 46 17

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4420
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5422
Ophiocordyceps australis map64 (Brazil) OphauB2|3883 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|04125
Ophiocordyceps camponoti-rufipedis Ophun1|4034
Ophiocordyceps kimflemingae Ophio5|7035
Ophiocordyceps subramaniannii Hirsu2|9150

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3883
MEASFWTRRMGLVFSLDDLVALWHTHRTLLILCAFAVLVFIRAYLHLRGDREGLCVLPAKFEQHGLPDKAAKSSG
PRRIRGGIVKKTSRNGNEETELTRLNGDEKTNSTRPVAVMVFFSSVTTKTETIAREYLATLKEAVTQLAKDSGRQ
FLEPELHDLSEIDFEDFFVAPPKSEANAQFFYLFLIPSYNIDTINDTLLQHMEETHHDFRIDTAPLAPLIGYSVF
GFGDREGWPDEANGFCFQAKHLDKYMSKLTGRKRAYPIGMGDMKSDHGLRFSEWAGGIHDVLGHVARTDSLGEGV
PGSGDAEESDEGDAADEDDGEALLDVDQEGQTSTNSSRPLDDVEDLGKMMRSTDGETRPLAVDFTDYGRPSTSSS
TRPKATKSKTTAQPGPLVVKEMVAKNSPTYAALTKQGYSIVGSHSGVKICRWTKSALRGRGSCYKYSLYGINSHQ
CMETTPSLSCSNKCVFCWRHGTNPVGTTWRWVVDAPDLIFEGVKEQHYKKIKMMRGVPGVRAERYAEALRIRHCA
LSLVGEPIFYPHINEFLALLHGERISSFLVCNAQHPDELAALKAVTQLYVSIDASNRDSLRKIDRPLHRDFWERF
QRCLDILREKRFRHRTVFRLTLVKGFNVDDEAEGYAALVERGLPCFVEIKGVTYCGTSTSSNAGLSMSNVPFYWE
VCDFARALETRLRARGLAYGIAAEHAHSCCILLASERFRVGGKWRTHIDYGRFFELLEQRGADGEWRPEDYMGQE
TPEWALWGNGGFDPRDQRVDRKGRRIENVVVREQPPGEVW*
Coding >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGACTTGGTGGCCCTTTGGCACACG
CACCGGACGTTGCTCATACTCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGAT
CGGGAGGGCTTGTGTGTGCTGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGC
CCACGAAGAATCAGAGGCGGCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTA
AATGGAGACGAAAAGACAAACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACT
GAAACCATTGCTCGTGAATACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAG
TTTCTCGAGCCCGAGTTGCACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAG
GCCAATGCTCAGTTTTTCTACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAG
CACATGGAGGAGACGCACCACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTT
GGATTTGGCGACAGAGAGGGCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTAC
ATGTCCAAGCTGACGGGCCGCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGC
TTTTCCGAGTGGGCTGGCGGGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTG
CCGGGGAGTGGCGATGCTGAAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGAC
GTGGACCAAGAGGGCCAAACCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATG
CGCTCGACAGATGGCGAGACACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGT
ACAAGACCAAAGGCAACGAAAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAA
AACTCGCCCACGTATGCAGCGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGC
CGATGGACAAAGTCGGCGTTACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAG
TGCATGGAGACGACGCCCTCGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTG
GGCACGACGTGGCGGTGGGTGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAG
ATTAAGATGATGCGAGGCGTGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCC
CTCTCGCTGGTGGGCGAGCCCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATT
TCTTCATTTCTTGTCTGCAACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTG
TCGATTGACGCCTCGAACCGCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTC
CAGCGCTGCCTCGACATTTTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGC
TTCAACGTGGACGACGAGGCAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAG
GGCGTCACGTACTGCGGCACGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAG
GTGTGCGACTTTGCGCGGGCGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCAT
GCGCATAGCTGCTGCATCTTGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTAT
GGGCGCTTTTTTGAGCTGCTTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAG
ACGCCCGAGTGGGCTCTCTGGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGG
ATTGAAAATGTAGTGGTTCGCGAGCAGCCGCCCGGCGAGGTTTGGTAA
Transcript >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGACTTGGTGGCCCTTTGGCACACG
CACCGGACGTTGCTCATACTCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGAT
CGGGAGGGCTTGTGTGTGCTGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGC
CCACGAAGAATCAGAGGCGGCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTA
AATGGAGACGAAAAGACAAACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACT
GAAACCATTGCTCGTGAATACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAG
TTTCTCGAGCCCGAGTTGCACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAG
GCCAATGCTCAGTTTTTCTACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAG
CACATGGAGGAGACGCACCACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTT
GGATTTGGCGACAGAGAGGGCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTAC
ATGTCCAAGCTGACGGGCCGCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGC
TTTTCCGAGTGGGCTGGCGGGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTG
CCGGGGAGTGGCGATGCTGAAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGAC
GTGGACCAAGAGGGCCAAACCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATG
CGCTCGACAGATGGCGAGACACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGT
ACAAGACCAAAGGCAACGAAAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAA
AACTCGCCCACGTATGCAGCGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGC
CGATGGACAAAGTCGGCGTTACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAG
TGCATGGAGACGACGCCCTCGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTG
GGCACGACGTGGCGGTGGGTGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAG
ATTAAGATGATGCGAGGCGTGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCC
CTCTCGCTGGTGGGCGAGCCCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATT
TCTTCATTTCTTGTCTGCAACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTG
TCGATTGACGCCTCGAACCGCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTC
CAGCGCTGCCTCGACATTTTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGC
TTCAACGTGGACGACGAGGCAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAG
GGCGTCACGTACTGCGGCACGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAG
GTGTGCGACTTTGCGCGGGCGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCAT
GCGCATAGCTGCTGCATCTTGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTAT
GGGCGCTTTTTTGAGCTGCTTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAG
ACGCCCGAGTGGGCTCTCTGGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGG
ATTGAAAATGTAGTGGTTCGCGAGCAGCCGCCCGGCGAGGTTTGGTAA
Gene >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGGCACGTAACTTTAGCCCTCTCAT
TACCCCAGGAGCGCAACTCTGACAGGCTCTCAGACTTGGTGGCCCTTTGGCACACGCACCGGACGTTGCTCATAC
TCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGATCGGGAGGGCTTGTGTGTGC
TGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGCCCACGAAGAATCAGAGGCG
GCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTAAATGGAGACGAAAAGACAA
ACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACTGAAACCATTGCTCGTGAAT
ACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAGTTTCTCGAGCCCGAGTTGC
ACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAGGCCAATGCTCAGTTTTTCT
ACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAGCACATGGAGGAGACGCACC
ACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTTGGATTTGGCGACAGAGAGG
GCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTACATGTCCAAGCTGACGGGCC
GCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGCTTTTCCGAGTGGGCTGGCG
GGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTGCCGGGGAGTGGCGATGCTG
AAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGACGTGGACCAAGAGGGCCAAA
CCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATGCGCTCGACAGATGGCGAGA
CACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGTACAAGACCAAAGGCAACGA
AAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAAAACTCGCCCACGTATGCAG
CGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGCCGATGGACAAAGTCGGCGT
TACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAGTGCATGGAGACGACGCCCT
CGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTGGGCACGACGTGGCGGTGGG
TGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAGATTAAGATGATGCGAGGCG
TGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCCCTCTCGCTGGTGGGCGAGC
CCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATTTCTTCATTTCTTGTCTGCA
ACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTGTCGATTGACGCCTCGAACC
GCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTCCAGCGCTGCCTCGACATTT
TGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGCTTCAACGTGGACGACGAGG
CAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAGGGCGTCACGTACTGCGGCA
CGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAGGTGTGCGACTTTGCGCGGG
CGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCATGCGCATAGCTGCTGCATCT
TGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTATGGGCGCTTTTTTGAGCTGC
TTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAGACGCCCGAGTGGGCTCTCT
GGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGGATTGAAAATGTAGTGGTTC
GCGAGCAGCCGCCCGGCGAGGTTTGGTAA

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