Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3883
Gene name
LocationContig_25:71721..74150
Strand-
Gene length (bp)2429
Transcript length (bp)2373
Coding sequence length (bp)2373
Protein length (aa) 791

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08608 Wyosine_form Wyosine base formation 4.0E-24 641 709
PF04055 Radical_SAM Radical SAM superfamily 2.0E-21 456 630
PF00258 Flavodoxin_1 Flavodoxin 4.7E-06 116 279

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q08960|TYW1_YEAST S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 114 785 0.0E+00
sp|O59761|TYW1_SCHPO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 85 774 0.0E+00
sp|Q08C92|TYW1_DANRE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 114 774 6.0E-147
sp|Q2KHP8|TYW1_XENLA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 113 774 1.0E-145
sp|Q9NV66|TYW1_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2 83 774 6.0E-144
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Swissprot ID Swissprot Description Start End E-value
sp|Q08960|TYW1_YEAST S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 114 785 0.0E+00
sp|O59761|TYW1_SCHPO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 85 774 0.0E+00
sp|Q08C92|TYW1_DANRE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 114 774 6.0E-147
sp|Q2KHP8|TYW1_XENLA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 113 774 1.0E-145
sp|Q9NV66|TYW1_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2 83 774 6.0E-144
sp|Q8BJM7|TYW1_MOUSE S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Mus musculus GN=Tyw1 PE=1 SV=1 105 774 6.0E-144
sp|Q5REF9|TYW1_PONAB S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pongo abelii GN=TYW1 PE=2 SV=1 83 774 6.0E-143
sp|Q8RXN5|TYW1_ARATH S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1 198 786 7.0E-138
sp|Q8H8N3|TYW1_ORYSJ S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativa subsp. japonica GN=TYW1 PE=2 SV=1 198 775 7.0E-137
sp|Q6NUM6|TYW1B_HUMAN S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1B PE=2 SV=3 132 774 5.0E-109
sp|Q9V1F9|TYW1_PYRAB S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=taw1 PE=1 SV=1 382 708 3.0E-55
sp|O59412|TYW1_PYRHO S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=taw1 PE=1 SV=1 386 708 8.0E-55
sp|Q57705|TYW1_METJA S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=taw1 PE=1 SV=1 404 718 4.0E-42
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0051536 iron-sulfur cluster binding Yes
GO:0010181 FMN binding Yes
GO:0097367 carbohydrate derivative binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0036094 small molecule binding No
GO:0043168 anion binding No
GO:0032553 ribonucleotide binding No
GO:0051540 metal cluster binding No
GO:1901363 heterocyclic compound binding No
GO:1901265 nucleoside phosphate binding No
GO:0097159 organic cyclic compound binding No
GO:0043167 ion binding No
GO:0000166 nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 29 46 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3883
MEASFWTRRMGLVFSLDDLVALWHTHRTLLILCAFAVLVFIRAYLHLRGDREGLCVLPAKFEQHGLPDKAAKSSG
PRRIRGGIVKKTSRNGNEETELTRLNGDEKTNSTRPVAVMVFFSSVTTKTETIAREYLATLKEAVTQLAKDSGRQ
FLEPELHDLSEIDFEDFFVAPPKSEANAQFFYLFLIPSYNIDTINDTLLQHMEETHHDFRIDTAPLAPLIGYSVF
GFGDREGWPDEANGFCFQAKHLDKYMSKLTGRKRAYPIGMGDMKSDHGLRFSEWAGGIHDVLGHVARTDSLGEGV
PGSGDAEESDEGDAADEDDGEALLDVDQEGQTSTNSSRPLDDVEDLGKMMRSTDGETRPLAVDFTDYGRPSTSSS
TRPKATKSKTTAQPGPLVVKEMVAKNSPTYAALTKQGYSIVGSHSGVKICRWTKSALRGRGSCYKYSLYGINSHQ
CMETTPSLSCSNKCVFCWRHGTNPVGTTWRWVVDAPDLIFEGVKEQHYKKIKMMRGVPGVRAERYAEALRIRHCA
LSLVGEPIFYPHINEFLALLHGERISSFLVCNAQHPDELAALKAVTQLYVSIDASNRDSLRKIDRPLHRDFWERF
QRCLDILREKRFRHRTVFRLTLVKGFNVDDEAEGYAALVERGLPCFVEIKGVTYCGTSTSSNAGLSMSNVPFYWE
VCDFARALETRLRARGLAYGIAAEHAHSCCILLASERFRVGGKWRTHIDYGRFFELLEQRGADGEWRPEDYMGQE
TPEWALWGNGGFDPRDQRVDRKGRRIENVVVREQPPGEVW*
Coding >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGACTTGGTGGCCCTTTGGCACACG
CACCGGACGTTGCTCATACTCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGAT
CGGGAGGGCTTGTGTGTGCTGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGC
CCACGAAGAATCAGAGGCGGCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTA
AATGGAGACGAAAAGACAAACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACT
GAAACCATTGCTCGTGAATACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAG
TTTCTCGAGCCCGAGTTGCACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAG
GCCAATGCTCAGTTTTTCTACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAG
CACATGGAGGAGACGCACCACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTT
GGATTTGGCGACAGAGAGGGCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTAC
ATGTCCAAGCTGACGGGCCGCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGC
TTTTCCGAGTGGGCTGGCGGGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTG
CCGGGGAGTGGCGATGCTGAAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGAC
GTGGACCAAGAGGGCCAAACCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATG
CGCTCGACAGATGGCGAGACACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGT
ACAAGACCAAAGGCAACGAAAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAA
AACTCGCCCACGTATGCAGCGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGC
CGATGGACAAAGTCGGCGTTACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAG
TGCATGGAGACGACGCCCTCGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTG
GGCACGACGTGGCGGTGGGTGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAG
ATTAAGATGATGCGAGGCGTGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCC
CTCTCGCTGGTGGGCGAGCCCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATT
TCTTCATTTCTTGTCTGCAACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTG
TCGATTGACGCCTCGAACCGCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTC
CAGCGCTGCCTCGACATTTTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGC
TTCAACGTGGACGACGAGGCAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAG
GGCGTCACGTACTGCGGCACGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAG
GTGTGCGACTTTGCGCGGGCGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCAT
GCGCATAGCTGCTGCATCTTGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTAT
GGGCGCTTTTTTGAGCTGCTTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAG
ACGCCCGAGTGGGCTCTCTGGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGG
ATTGAAAATGTAGTGGTTCGCGAGCAGCCGCCCGGCGAGGTTTGGTAA
Transcript >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGACTTGGTGGCCCTTTGGCACACG
CACCGGACGTTGCTCATACTCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGAT
CGGGAGGGCTTGTGTGTGCTGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGC
CCACGAAGAATCAGAGGCGGCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTA
AATGGAGACGAAAAGACAAACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACT
GAAACCATTGCTCGTGAATACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAG
TTTCTCGAGCCCGAGTTGCACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAG
GCCAATGCTCAGTTTTTCTACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAG
CACATGGAGGAGACGCACCACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTT
GGATTTGGCGACAGAGAGGGCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTAC
ATGTCCAAGCTGACGGGCCGCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGC
TTTTCCGAGTGGGCTGGCGGGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTG
CCGGGGAGTGGCGATGCTGAAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGAC
GTGGACCAAGAGGGCCAAACCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATG
CGCTCGACAGATGGCGAGACACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGT
ACAAGACCAAAGGCAACGAAAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAA
AACTCGCCCACGTATGCAGCGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGC
CGATGGACAAAGTCGGCGTTACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAG
TGCATGGAGACGACGCCCTCGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTG
GGCACGACGTGGCGGTGGGTGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAG
ATTAAGATGATGCGAGGCGTGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCC
CTCTCGCTGGTGGGCGAGCCCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATT
TCTTCATTTCTTGTCTGCAACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTG
TCGATTGACGCCTCGAACCGCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTC
CAGCGCTGCCTCGACATTTTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGC
TTCAACGTGGACGACGAGGCAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAG
GGCGTCACGTACTGCGGCACGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAG
GTGTGCGACTTTGCGCGGGCGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCAT
GCGCATAGCTGCTGCATCTTGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTAT
GGGCGCTTTTTTGAGCTGCTTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAG
ACGCCCGAGTGGGCTCTCTGGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGG
ATTGAAAATGTAGTGGTTCGCGAGCAGCCGCCCGGCGAGGTTTGGTAA
Gene >OphauB2|3883
ATGGAAGCCTCGTTCTGGACTCGTCGCATGGGGCTGGTCTTTTCTCTTGATGGCACGTAACTTTAGCCCTCTCAT
TACCCCAGGAGCGCAACTCTGACAGGCTCTCAGACTTGGTGGCCCTTTGGCACACGCACCGGACGTTGCTCATAC
TCTGCGCATTTGCAGTCCTCGTCTTTATCCGGGCATACCTGCATCTACGGGGGGATCGGGAGGGCTTGTGTGTGC
TGCCGGCAAAGTTTGAGCAACATGGCTTGCCAGACAAGGCGGCCAAGTCGAGTGGCCCACGAAGAATCAGAGGCG
GCATTGTAAAAAAGACGTCTCGAAATGGAAACGAAGAGACCGAGTTGACACGACTAAATGGAGACGAAAAGACAA
ACTCGACACGACCTGTTGCTGTAATGGTGTTTTTTTCTTCCGTCACGACAAAGACTGAAACCATTGCTCGTGAAT
ACCTGGCCACTTTGAAGGAGGCGGTAACACAGCTGGCCAAAGACTCGGGTCGACAGTTTCTCGAGCCCGAGTTGC
ACGATCTCTCTGAAATCGACTTTGAAGACTTCTTTGTGGCGCCCCCAAAGTCGGAGGCCAATGCTCAGTTTTTCT
ACCTTTTTCTGATACCCAGCTACAACATTGACACAATCAACGACACGCTCCTTCAGCACATGGAGGAGACGCACC
ACGACTTTCGCATCGACACCGCGCCCCTCGCTCCTCTGATTGGCTATTCTGTTTTTGGATTTGGCGACAGAGAGG
GCTGGCCCGATGAAGCAAACGGCTTCTGCTTCCAAGCCAAGCACCTGGACAAGTACATGTCCAAGCTGACGGGCC
GCAAGCGGGCGTATCCCATTGGCATGGGAGACATGAAGAGTGACCATGGCCTTCGCTTTTCCGAGTGGGCTGGCG
GGATTCACGATGTCTTGGGCCACGTTGCGCGCACTGACAGTCTTGGAGAGGGCGTGCCGGGGAGTGGCGATGCTG
AAGAGAGTGACGAGGGCGATGCAGCAGACGAGGACGATGGCGAAGCGCTGCTTGACGTGGACCAAGAGGGCCAAA
CCTCTACAAACTCGTCGAGACCACTAGACGATGTTGAGGATCTTGGAAAGATGATGCGCTCGACAGATGGCGAGA
CACGGCCTCTAGCCGTCGATTTTACAGACTATGGCCGTCCTTCCACCAGCTCAAGTACAAGACCAAAGGCAACGA
AAAGCAAGACGACGGCGCAACCAGGGCCTCTAGTGGTGAAGGAAATGGTTGCCAAAAACTCGCCCACGTATGCAG
CGCTGACGAAGCAAGGCTACTCGATTGTCGGCTCGCACTCGGGCGTCAAGATATGCCGATGGACAAAGTCGGCGT
TACGCGGGCGCGGAAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAGTGCATGGAGACGACGCCCT
CGCTCTCGTGCTCCAACAAGTGTGTGTTTTGCTGGAGACACGGCACCAACCCGGTGGGCACGACGTGGCGGTGGG
TGGTGGATGCGCCAGACTTGATATTCGAGGGCGTCAAGGAGCAGCATTATAAAAAGATTAAGATGATGCGAGGCG
TGCCGGGCGTGCGGGCGGAGCGCTATGCCGAGGCCTTGCGGATTCGGCACTGTGCCCTCTCGCTGGTGGGCGAGC
CCATTTTTTACCCTCATATCAATGAGTTCTTGGCGCTGCTGCACGGCGAGCGCATTTCTTCATTTCTTGTCTGCA
ACGCGCAGCATCCCGACGAGCTCGCGGCGCTCAAGGCGGTTACGCAGCTCTACGTGTCGATTGACGCCTCGAACC
GCGACTCGTTGCGCAAGATTGACCGGCCGCTTCACCGCGACTTTTGGGAACGCTTCCAGCGCTGCCTCGACATTT
TGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTTCGCCTCACGCTTGTCAAGGGCTTCAACGTGGACGACGAGG
CAGAGGGCTATGCTGCGCTGGTGGAACGCGGGCTGCCGTGTTTTGTGGAAATCAAGGGCGTCACGTACTGCGGCA
CGTCGACGTCGTCGAATGCTGGGCTGAGCATGTCGAATGTGCCGTTTTACTGGGAGGTGTGCGACTTTGCGCGGG
CGCTCGAGACGAGGCTGCGGGCGCGCGGGCTGGCATATGGCATTGCGGCGGAGCATGCGCATAGCTGCTGCATCT
TGCTGGCCAGCGAGCGCTTTAGAGTTGGGGGCAAGTGGCGGACGCATATTGACTATGGGCGCTTTTTTGAGCTGC
TTGAGCAAAGGGGCGCGGATGGAGAGTGGAGGCCCGAGGATTACATGGGACAAGAGACGCCCGAGTGGGCTCTCT
GGGGGAATGGCGGCTTTGACCCGCGCGACCAGAGGGTTGATCGCAAGGGGCGGAGGATTGAAAATGTAGTGGTTC
GCGAGCAGCCGCCCGGCGAGGTTTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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