© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3882 |
| Gene name | |
| Location | Contig_25:70407..71275 |
| Strand | + |
| Gene length (bp) | 868 |
| Transcript length (bp) | 519 |
| Coding sequence length (bp) | 519 |
| Protein length (aa) | 173 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02064 | MAS20 | MAS20 protein import receptor | 9.4E-41 | 12 | 144 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P35848|TOM20_NEUCR | Mitochondrial import receptor subunit tom20 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom20 PE=3 SV=1 | 20 | 172 | 5.0E-43 |
| sp|O14225|TOM20_SCHPO | Mitochondrial import receptor subunit tom20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom20 PE=3 SV=1 | 16 | 150 | 3.0E-26 |
| sp|P35180|TOM20_YEAST | Mitochondrial import receptor subunit TOM20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM20 PE=1 SV=1 | 11 | 161 | 3.0E-22 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005742 | mitochondrial outer membrane translocase complex | Yes |
| GO:0006605 | protein targeting | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0033036 | macromolecule localization | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0051641 | cellular localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0005575 | cellular_component | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0015031 | protein transport | No |
| GO:0098799 | outer mitochondrial membrane protein complex | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0009987 | cellular process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0098796 | membrane protein complex | No |
| GO:0051234 | establishment of localization | No |
| GO:0008104 | protein localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3882 MVQTSTMATASAAVAATLAVAYAAYFDHRRRSQPEFRRGLRRSERRLARAEKEEAEASSRLLRESIKSLVNEAKA QGFPTGVEEREQYFNEQVNLGESLSTNASMTLESALAFYKGLKVYPAPADLIKIYDGTVPKPILDILAQMIAYDS NLEVRSRSNGIDLAGMPNVGLD* |
| Coding | >OphauB2|3882 ATGGTCCAAACATCGACAATGGCAACTGCGTCGGCTGCAGTCGCAGCGACGCTGGCAGTTGCTTACGCCGCATAC TTTGACCACCGCCGCCGCTCACAGCCCGAATTCCGCCGCGGCCTGCGCAGAAGCGAGCGCCGCCTGGCGCGTGCC GAAAAGGAAGAGGCTGAAGCTTCATCGCGCCTCCTCCGCGAATCCATTAAGAGCTTGGTGAATGAGGCCAAGGCG CAGGGCTTTCCCACTGGCGTCGAGGAGCGAGAGCAATATTTTAATGAACAAGTCAACTTGGGCGAGTCGCTGAGT ACTAACGCCTCCATGACTCTCGAGTCAGCTCTCGCCTTTTACAAGGGCCTCAAGGTCTATCCCGCTCCTGCAGAC CTTATCAAAATCTATGATGGCACCGTGCCAAAGCCCATATTAGACATTCTCGCCCAAATGATTGCCTACGACTCA AATCTCGAGGTTCGCTCTCGCTCCAACGGCATCGACCTGGCCGGCATGCCAAACGTCGGTCTCGATTAG |
| Transcript | >OphauB2|3882 ATGGTCCAAACATCGACAATGGCAACTGCGTCGGCTGCAGTCGCAGCGACGCTGGCAGTTGCTTACGCCGCATAC TTTGACCACCGCCGCCGCTCACAGCCCGAATTCCGCCGCGGCCTGCGCAGAAGCGAGCGCCGCCTGGCGCGTGCC GAAAAGGAAGAGGCTGAAGCTTCATCGCGCCTCCTCCGCGAATCCATTAAGAGCTTGGTGAATGAGGCCAAGGCG CAGGGCTTTCCCACTGGCGTCGAGGAGCGAGAGCAATATTTTAATGAACAAGTCAACTTGGGCGAGTCGCTGAGT ACTAACGCCTCCATGACTCTCGAGTCAGCTCTCGCCTTTTACAAGGGCCTCAAGGTCTATCCCGCTCCTGCAGAC CTTATCAAAATCTATGATGGCACCGTGCCAAAGCCCATATTAGACATTCTCGCCCAAATGATTGCCTACGACTCA AATCTCGAGGTTCGCTCTCGCTCCAACGGCATCGACCTGGCCGGCATGCCAAACGTCGGTCTCGATTAG |
| Gene | >OphauB2|3882 ATGGTCCAAACATCGACAATGGCAACTGCGTCGGCTGCAGTCGCAGCGACGCTGGCAGTTGGTACGTCTTTTCCA TCCACAAAAAAAAACACTCCTCCAAAAAAAATAAAGAAATTTGAAAAAAAAAATATATATATATATATCCAAGAG CCGCTTTACAATCATTACCAACAATGCCTCTCTTTCTCTCTAGCTTACGCCGCATACTTTGACCACCGCCGCCGC TCACAGCCCGAATTCCGCCGCGGCCTGCGCAGAAGCGAGCGCCGCCTGGCGCGTGCCGAAAAGGAAGAGGCTGAA GCTTCATCGCGCCTCCTCCGCGAATCCATTAAGAGCTTGGTGAATGAGGCCAAGGCGCAGGGCTTTCCCACTGGC GTCGAGGAGCGAGAGCAATATTTTAATGAACAAGTCAACTTGGGCGAGTCGCTGAGTACTAACGGTCAGTCTCTC TCTCTTTTTTTTTTTTTTCTTTTCAATATAAAAAAAATCCATCTCTTCTTTCCTGCCAGCCACTGGTTTTGCCAT GGGAAATTCCCATCTCATTTCTTTCTTCTCTTCATTTTTTTTCCTCTGCTGACCAGTCTGTATAGCCTCCATGAC TCTCGAGTCAGCTCTCGCCTTTTACAAGGGCCTCAAGGTCTATCCCGCTCCTGCAGACCTTATCAAAATCTATGA TGGCACCGTGCCAAAGGTCAGCTTGGCTCAGACCTCTTGCCAAGACAGGCTCTCTTTGAACTAACACTGCTTCAA CCCACAGCCCATATTAGACATTCTCGCCCAAATGATTGCCTACGACTCAAATCTCGAGGTTCGCTCTCGCTCCAA CGGCATCGACCTGGCCGGCATGCCAAACGTCGGTCTCGATTAG |