© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3854 |
| Gene name | |
| Location | Contig_249:549..2267 |
| Strand | - |
| Gene length (bp) | 1718 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 2.1E-20 | 271 | 440 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 3 | 440 | 1.0E-58 |
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 170 | 440 | 5.0E-40 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 4 | 440 | 3.0E-32 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 220 | 440 | 1.0E-24 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 220 | 440 | 3.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 3 | 440 | 1.0E-58 |
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 170 | 440 | 5.0E-40 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 4 | 440 | 3.0E-32 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 220 | 440 | 1.0E-24 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 220 | 440 | 3.0E-22 |
| sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 221 | 440 | 2.0E-15 |
| sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 203 | 440 | 3.0E-15 |
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 4 | 172 | 4.0E-15 |
| sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 203 | 440 | 8.0E-15 |
| sp|Q83A83|METC_COXBU | Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | 252 | 440 | 2.0E-14 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 1 | 254 | 1.0E-13 |
| sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 203 | 440 | 7.0E-13 |
| sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 204 | 440 | 4.0E-11 |
| sp|O31632|METC_BACSU | Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1 | 221 | 440 | 4.0E-11 |
| sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 204 | 440 | 4.0E-11 |
| sp|P44502|METB_HAEIN | Cystathionine gamma-synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metB PE=3 SV=1 | 272 | 416 | 7.0E-10 |
| sp|O31631|METI_BACSU | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase OS=Bacillus subtilis (strain 168) GN=metI PE=1 SV=1 | 209 | 416 | 2.0E-09 |
| sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 204 | 440 | 2.0E-09 |
| sp|P53780|METC_ARATH | Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1 | 179 | 415 | 1.0E-07 |
| sp|Q9C876|CGS2_ARATH | Probable cystathionine gamma-synthase 2 OS=Arabidopsis thaliana GN=CGS2 PE=3 SV=1 | 191 | 440 | 4.0E-07 |
| sp|P00935|METB_ECOLI | Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1 | 273 | 440 | 9.0E-07 |
| sp|P9WGB7|METB_MYCTU | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metB PE=1 SV=1 | 273 | 440 | 3.0E-06 |
| sp|P9WGB6|METB_MYCTO | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metB PE=3 SV=1 | 273 | 440 | 3.0E-06 |
| sp|P66876|METB_MYCBO | Cystathionine gamma-synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=metB PE=3 SV=1 | 273 | 440 | 3.0E-06 |
| sp|P13254|MEGL_PSEPU | Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | 273 | 416 | 7.0E-06 |
| sp|P9WGB5|METZ_MYCTU | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metZ PE=1 SV=1 | 272 | 440 | 7.0E-06 |
| sp|P9WGB4|METZ_MYCTO | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metZ PE=3 SV=1 | 272 | 440 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019346 | transsulfuration | Yes |
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0019842 | vitamin binding | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0000096 | sulfur amino acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0006534 | cysteine metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0050667 | homocysteine metabolic process | No |
| GO:0009069 | serine family amino acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0070279 | vitamin B6 binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009092 | homoserine metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043168 | anion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3854 MASKLGDAIPNEEHAVSVSLPKWKHVEGWARRDHGIISQLQTGYPRFFINRRIVQLAQQLGRWASRLPRDDACYR AATASGKTALLLPSKWMALTCQAHLDGYNKEAPLEDLQVVHVAFDGQLSRVTGHGQQGAAEGASHRDLYMVLYPE RLWPQAKAFWQHTGFGISSRLAAHWLGNAPFLQASGLEGGERVPVQEAAQAALALGQRLADLYEAGRDLVFLYPT GMSAIARTALAIRSLQQSGHEHRVAVFGFLYVDTFKVLTEAGLSIDALYTEFAGNPLLGSLDLGRLHALSQTHGF VLAVDDTVGTPVNLCLAPLCDVVCSSLTKMFSGACNVMGGCAVVSPSSPRRQALCQALAAHQQQSGGPATYFASD LVVMERNSRDFALRVAAASRNAQQLSLRLRRHPAVKTVYYPLGSPTQHLYDCYRRPGAGYGYLLSPGHQL* |
| Coding | >OphauB2|3854 ATGGCGAGCAAGCTGGGAGATGCGATTCCCAACGAAGAGCACGCCGTCAGCGTCTCCCTGCCGAAATGGAAACAC GTCGAGGGCTGGGCGCGGCGCGACCATGGCATTATTTCGCAGCTGCAGACGGGCTACCCCCGCTTCTTCATCAAC CGCCGCATCGTGCAGCTCGCACAGCAGCTCGGGCGCTGGGCCAGCAGGCTCCCGCGAGATGACGCATGCTACCGC GCGGCAACGGCCAGCGGCAAGACTGCGCTGCTGCTGCCGAGCAAGTGGATGGCGCTCACCTGCCAAGCCCATCTC GACGGGTACAACAAGGAGGCGCCGCTCGAGGACTTGCAGGTGGTGCATGTGGCCTTTGACGGCCAGCTCAGCAGG GTGACGGGCCACGGCCAGCAGGGAGCAGCAGAGGGCGCGTCGCACAGAGACTTGTACATGGTGCTGTACCCGGAG CGTCTGTGGCCGCAGGCAAAGGCCTTTTGGCAGCACACGGGCTTTGGCATCTCGAGCCGCCTGGCCGCCCATTGG CTCGGCAACGCGCCCTTTCTCCAAGCCTCGGGCCTCGAGGGCGGCGAGAGGGTGCCGGTGCAAGAGGCGGCGCAG GCGGCGCTGGCACTTGGGCAGCGGCTGGCCGACTTGTACGAGGCGGGCCGGGACCTCGTCTTCCTCTACCCAACG GGCATGTCGGCCATTGCGCGGACGGCGCTGGCTATCCGCAGTCTGCAGCAGAGCGGCCACGAGCATCGGGTTGCC GTCTTTGGCTTCTTGTACGTGGACACGTTCAAGGTGCTGACCGAGGCGGGCCTGAGCATCGACGCCCTCTACACC GAGTTTGCAGGCAACCCGCTGCTCGGCTCGCTGGACCTGGGGCGGCTGCACGCGCTCTCGCAGACGCACGGCTTT GTCCTGGCAGTGGACGACACGGTCGGCACGCCCGTCAACCTGTGTCTGGCGCCGCTGTGCGACGTGGTGTGCTCG AGCCTGACCAAGATGTTTAGCGGCGCCTGCAATGTCATGGGCGGCTGTGCCGTCGTCTCGCCCTCGTCGCCTCGC CGCCAGGCCCTCTGCCAGGCCCTGGCCGCCCACCAGCAGCAATCGGGCGGCCCAGCAACCTACTTTGCCTCGGAT CTCGTCGTCATGGAGCGCAACAGCCGCGACTTTGCCCTGCGTGTTGCAGCCGCCAGCCGCAATGCCCAGCAGCTC AGTCTTCGCCTGCGCCGCCACCCCGCCGTCAAGACGGTCTACTATCCCCTCGGCAGTCCCACCCAGCATCTCTAC GACTGCTACCGCCGCCCGGGCGCTGGCTACGGCTACCTCTTGTCCCCTGGGCACCAACTTTAG |
| Transcript | >OphauB2|3854 ATGGCGAGCAAGCTGGGAGATGCGATTCCCAACGAAGAGCACGCCGTCAGCGTCTCCCTGCCGAAATGGAAACAC GTCGAGGGCTGGGCGCGGCGCGACCATGGCATTATTTCGCAGCTGCAGACGGGCTACCCCCGCTTCTTCATCAAC CGCCGCATCGTGCAGCTCGCACAGCAGCTCGGGCGCTGGGCCAGCAGGCTCCCGCGAGATGACGCATGCTACCGC GCGGCAACGGCCAGCGGCAAGACTGCGCTGCTGCTGCCGAGCAAGTGGATGGCGCTCACCTGCCAAGCCCATCTC GACGGGTACAACAAGGAGGCGCCGCTCGAGGACTTGCAGGTGGTGCATGTGGCCTTTGACGGCCAGCTCAGCAGG GTGACGGGCCACGGCCAGCAGGGAGCAGCAGAGGGCGCGTCGCACAGAGACTTGTACATGGTGCTGTACCCGGAG CGTCTGTGGCCGCAGGCAAAGGCCTTTTGGCAGCACACGGGCTTTGGCATCTCGAGCCGCCTGGCCGCCCATTGG CTCGGCAACGCGCCCTTTCTCCAAGCCTCGGGCCTCGAGGGCGGCGAGAGGGTGCCGGTGCAAGAGGCGGCGCAG GCGGCGCTGGCACTTGGGCAGCGGCTGGCCGACTTGTACGAGGCGGGCCGGGACCTCGTCTTCCTCTACCCAACG GGCATGTCGGCCATTGCGCGGACGGCGCTGGCTATCCGCAGTCTGCAGCAGAGCGGCCACGAGCATCGGGTTGCC GTCTTTGGCTTCTTGTACGTGGACACGTTCAAGGTGCTGACCGAGGCGGGCCTGAGCATCGACGCCCTCTACACC GAGTTTGCAGGCAACCCGCTGCTCGGCTCGCTGGACCTGGGGCGGCTGCACGCGCTCTCGCAGACGCACGGCTTT GTCCTGGCAGTGGACGACACGGTCGGCACGCCCGTCAACCTGTGTCTGGCGCCGCTGTGCGACGTGGTGTGCTCG AGCCTGACCAAGATGTTTAGCGGCGCCTGCAATGTCATGGGCGGCTGTGCCGTCGTCTCGCCCTCGTCGCCTCGC CGCCAGGCCCTCTGCCAGGCCCTGGCCGCCCACCAGCAGCAATCGGGCGGCCCAGCAACCTACTTTGCCTCGGAT CTCGTCGTCATGGAGCGCAACAGCCGCGACTTTGCCCTGCGTGTTGCAGCCGCCAGCCGCAATGCCCAGCAGCTC AGTCTTCGCCTGCGCCGCCACCCCGCCGTCAAGACGGTCTACTATCCCCTCGGCAGTCCCACCCAGCATCTCTAC GACTGCTACCGCCGCCCGGGCGCTGGCTACGGCTACCTCTTGTCCCCTGGGCACCAACTTTAG |
| Gene | >OphauB2|3854 ATGGCGAGCAAGCTGGGAGATGCGATTCCCAACGAAGAGCACGTAAGCATTGCCTTGCTCCCGTCTTTGCCTTGC TTTGGCACCTCTTTTCCTAGTCTCCTCTTGCCAGTCCAGTCGCTTGTCCAAGACGATGCTTGTCCTCTACTAACC TCTTTTTGCCTCCCTCCCCGGCCGCCCGCCGCCCGCTCTAGGCCGTCAGCGTCTCCCTGCCGAAATGGAAACACG TCGAGGGCTGGGCGCGGCGCGACCATGGCATTATTTCGCAGCTGCAGACGGGCTACCCCCGCTTCTTCATCAACC GCCGCATCGTGCAGCTCGCACAGCAGCTCGGGCGCTGGGCCAGCAGGCTCCCGCGAGATGACGCATGCTACCGCG CGGCAACGGCCAGCGGCAAGACTGCGCTGCTGCTGCCGAGCAAGTGGATGGCGCTCACCTGCCAAGCCCATCTCG ACGGGTACAACAAGGAGGCGCCGCTCGAGGACTTGCAGGTGGTGCATGTGGCCTTTGACGGCCAGCTCAGCAGGG TGACGGGCCACGGCCAGCAGGGAGCAGCAGAGGGCGCGTCGCACAGAGACTTGTACATGGTGCTGTACCCGGAGC GTCTGTGGCCGCAGGCAAAGGCCTTTTGGCAGCACACGGGCTTTGGCATCTCGAGCCGCCTGGCCGCCCATTGGC TCGGCAACGCGCCCTTTCTCCAAGCCTCGGGCCTCGAGGGCGGCGAGAGGGTGCCGGTGCAAGAGGCGGCGCAGG CGGCGCTGGCACTTGGGCAGCGGCTGGCCGACTTGTACGAGGCGGGCCGGGACCTCGTCTTCCTCTACCCAACGG GCATGTCGGCCATTGCGCGGACGGCGCTGGCTATCCGCAGTCTGCAGCAGAGCGGCCACGAGCATCGGGTTGCCG TCTTTGGGTCAGTTGAATGACAGTTGAATGACTCAGTTGAATGACAGTTGAATGACAGTGGAATGGCTTGATGAC TTGAGTGTGGCGGCTAACCAGGCTGGCAGCTTCTTGTACGTGGACACGTTCAAGGTGCTGACCGAGGTGTGCGGG TTTGAATACGTGCTGTACGGCGACGCGTCGGTCGAGGCGCTCGAGGCTGATTTGCAGGCGGGCCTGAGCATCGAC GCCCTCTACACCGAGTTTGCAGGCAACCCGCTGCTCGGCTCGCTGGACCTGGGGCGGCTGCACGCGCTCTCGCAG ACGCACGGCTTTGTCCTGGCAGTGGACGACACGGTCGGCACGCCCGTCAACCTGTGTCTGGCGCCGCTGTGCGAC GTGGTGTGCTCGAGCCTGACCAAGATGTTTAGCGGCGCCTGCAATGTCATGGGCGGCTGTGCCGTCGTCTCGCCC TCGTCGCCTCGCCGCCAGGCCCTCTGCCAGGCCCTGGCCGCCCACCAGCAGCAATCGGGCGGCCCAGCAACCTAC TTTGCCTCGGATCTCGTCGTCATGGAGCGCAACAGCCGCGACTTTGCCCTGCGTGTTGCAGCCGCCAGCCGCAAT GCCCAGCAGCTCAGTCTTCGCCTGCGCCGCCACCCCGCCGTCAAGACGGTCTACTATCCCCTCGGCAGTCCCACC CAGCATCTCTACGACTGCTACCGCCGCCCGGGCGCTGGCTACGGCTACCTCTTGTCCGTGTGCTTTGTGTCGCCG CCTGCTGCCTGTGCCTTTCACGATGCCCTCGACATGGCCAAGGGGCCCAGCCTGGGCACCAACTTTAG |