© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3832 |
| Gene name | |
| Location | Contig_245:11906..13886 |
| Strand | + |
| Gene length (bp) | 1980 |
| Transcript length (bp) | 1779 |
| Coding sequence length (bp) | 1779 |
| Protein length (aa) | 593 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.7E-09 | 138 | 511 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.5E-06 | 116 | 308 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04991|FMP42_YEAST | Protein FMP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP42 PE=1 SV=1 | 61 | 577 | 2.0E-99 |
| sp|Q1JPD8|S43A3_BOVIN | Solute carrier family 43 member 3 OS=Bos taurus GN=SLC43A3 PE=2 SV=1 | 75 | 540 | 2.0E-16 |
| sp|Q8CGA3|LAT4_MOUSE | Large neutral amino acids transporter small subunit 4 OS=Mus musculus GN=Slc43a2 PE=1 SV=1 | 67 | 587 | 1.0E-14 |
| sp|Q8NBI5|S43A3_HUMAN | Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2 | 74 | 567 | 5.0E-13 |
| sp|A4IHK6|LAT4_XENTR | Large neutral amino acids transporter small subunit 4 OS=Xenopus tropicalis GN=slc43a2 PE=2 SV=1 | 67 | 587 | 1.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04991|FMP42_YEAST | Protein FMP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP42 PE=1 SV=1 | 61 | 577 | 2.0E-99 |
| sp|Q1JPD8|S43A3_BOVIN | Solute carrier family 43 member 3 OS=Bos taurus GN=SLC43A3 PE=2 SV=1 | 75 | 540 | 2.0E-16 |
| sp|Q8CGA3|LAT4_MOUSE | Large neutral amino acids transporter small subunit 4 OS=Mus musculus GN=Slc43a2 PE=1 SV=1 | 67 | 587 | 1.0E-14 |
| sp|Q8NBI5|S43A3_HUMAN | Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2 | 74 | 567 | 5.0E-13 |
| sp|A4IHK6|LAT4_XENTR | Large neutral amino acids transporter small subunit 4 OS=Xenopus tropicalis GN=slc43a2 PE=2 SV=1 | 67 | 587 | 1.0E-11 |
| sp|Q8N370|LAT4_HUMAN | Large neutral amino acids transporter small subunit 4 OS=Homo sapiens GN=SLC43A2 PE=1 SV=1 | 67 | 541 | 9.0E-11 |
| sp|O75387|LAT3_HUMAN | Large neutral amino acids transporter small subunit 3 OS=Homo sapiens GN=SLC43A1 PE=1 SV=1 | 82 | 414 | 5.0E-10 |
| sp|A2AVZ9|S43A3_MOUSE | Solute carrier family 43 member 3 OS=Mus musculus GN=Slc43a3 PE=1 SV=1 | 75 | 249 | 1.0E-09 |
| sp|Q5RF58|LAT4_PONAB | Large neutral amino acids transporter small subunit 4 OS=Pongo abelii GN=SLC43A2 PE=2 SV=1 | 67 | 541 | 3.0E-09 |
| sp|Q8BSM7|LAT3_MOUSE | Large neutral amino acids transporter small subunit 3 OS=Mus musculus GN=Slc43a1 PE=1 SV=1 | 67 | 414 | 9.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 138 | 160 | 22 |
| 3 | 167 | 184 | 17 |
| 4 | 189 | 211 | 22 |
| 5 | 223 | 245 | 22 |
| 6 | 255 | 277 | 22 |
| 7 | 379 | 401 | 22 |
| 8 | 421 | 441 | 20 |
| 9 | 446 | 463 | 17 |
| 10 | 468 | 490 | 22 |
| 11 | 497 | 519 | 22 |
| 12 | 539 | 558 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3832 MSLAQHLTAQEGVDRNDRIPDGQLEALDSPRWRRMSFDVLAPPEVQSIFEQDPEPRAAAYTVSAAWRGFQVAFAL VSCALASGIVFGFASIKPVFIARGVYYELCRPDGSSEPCEAISSLHSAPQGCRHACPDQDMRLNLLFIVASITTN VSSLFAGTVLDRHGRRACVTASALFLALGSAFMAASDPLIGANGYLVGNFFLSLGGSFLLLPSFQLSNAFPKYSG VIVALVTCAFDSSSAVFLFYRLAWSASGGAFTPTHFFVVYLVVPLAILIGEWTVMPAQPYHIIPELELKLDKARE SDHDFHTSDDDISDDAELFRVRSNRADRRLTEVGQIESLTGNADERRERAQQEGDRLAASGVWGVLHGLSAREQM KTPWFILLLVFTALQMLRINYFIASIRSQYEYLLGSERDAVLVNKFFDAALPIGGVASTPFIAVVLNNMSVAVML ALLTFYVVLIGLLNCLPYMWAALATVVSFVVFRPFYYSAVSHTATTIFGFATFGRVYGTIIFVSGLFNISQYGLD ALTNGPLSGNPTPVNIVIAAVSTVVGVVLTLFVLQKSKSYRQVSLKASSERGSLVSGSRVNGYGTLH* |
| Coding | >OphauB2|3832 ATGTCCCTGGCCCAGCATCTGACTGCTCAGGAGGGCGTTGATCGCAACGATCGCATCCCCGACGGCCAGCTCGAG GCGCTTGACTCTCCACGATGGAGACGCATGAGCTTCGACGTGCTGGCTCCGCCCGAGGTGCAGTCGATATTTGAG CAGGATCCCGAACCTCGTGCGGCAGCCTACACCGTCTCGGCCGCCTGGCGAGGCTTTCAAGTAGCATTTGCCCTC GTCTCGTGCGCTCTTGCATCGGGCATCGTCTTTGGCTTTGCCTCCATCAAGCCCGTCTTTATTGCCCGCGGCGTC TACTACGAGCTCTGCCGGCCCGACGGCTCGTCTGAGCCATGCGAGGCCATTAGTTCTCTCCACTCGGCGCCCCAG GGCTGCCGCCATGCCTGTCCAGACCAAGATATGCGTCTCAATCTACTCTTCATTGTAGCCTCCATTACTACAAAT GTCTCGTCTCTGTTTGCTGGTACCGTGCTGGATCGCCATGGCCGCAGGGCCTGCGTCACCGCCAGCGCCCTCTTT CTCGCCCTCGGCAGTGCCTTTATGGCTGCCTCTGACCCGCTCATTGGTGCAAACGGCTACTTGGTCGGCAACTTT TTCCTCAGCTTGGGAGGTTCATTTCTGCTCTTGCCTAGCTTCCAATTGTCCAATGCCTTCCCCAAGTACTCGGGA GTCATTGTGGCTCTAGTAACCTGTGCCTTTGACTCGTCGTCGGCCGTCTTTCTCTTTTACCGCCTTGCCTGGTCG GCCTCGGGCGGCGCCTTTACCCCGACTCACTTCTTTGTCGTCTACCTCGTCGTGCCATTGGCCATTTTGATTGGA GAGTGGACCGTTATGCCCGCCCAGCCCTATCACATTATTCCCGAACTCGAGCTCAAGCTTGACAAGGCCCGCGAG TCGGACCACGACTTTCACACTTCAGACGACGACATCTCGGACGACGCAGAGCTCTTCCGAGTGCGCAGCAACCGC GCGGACCGTCGCCTCACCGAGGTTGGCCAAATCGAGAGCCTCACGGGAAATGCTGATGAGCGGCGAGAGCGCGCG CAGCAAGAAGGCGACCGCCTGGCCGCCAGCGGCGTCTGGGGCGTGCTTCACGGCCTCTCGGCCCGGGAGCAAATG AAGACGCCCTGGTTCATCCTCCTCCTCGTTTTCACAGCGCTGCAGATGCTGCGGATAAACTACTTTATTGCATCC ATTAGATCCCAGTACGAGTATCTTTTGGGTTCGGAGCGGGATGCCGTCTTGGTCAACAAGTTTTTTGATGCTGCT CTGCCAATAGGTGGTGTTGCGTCGACGCCCTTTATTGCCGTCGTCTTGAACAATATGAGCGTCGCCGTCATGCTC GCCCTCCTTACCTTTTACGTTGTTCTTATAGGTTTGTTGAACTGCCTCCCGTACATGTGGGCTGCTTTGGCGACA GTGGTTAGCTTTGTCGTCTTTCGCCCTTTTTACTATTCCGCCGTCTCGCATACAGCAACCACCATTTTCGGCTTT GCAACATTTGGTCGCGTCTACGGCACCATTATATTCGTCTCGGGTCTCTTCAACATTTCACAGTATGGCCTCGAT GCCCTTACCAATGGGCCGCTCAGCGGAAACCCCACGCCCGTTAATATCGTCATTGCAGCGGTGAGCACCGTCGTT GGTGTTGTACTGACTCTGTTTGTCCTGCAAAAGAGCAAGAGCTACAGACAAGTATCGCTCAAGGCAAGCAGCGAG CGAGGAAGCCTGGTGTCGGGGTCGCGTGTCAATGGCTACGGAACTCTTCATTAA |
| Transcript | >OphauB2|3832 ATGTCCCTGGCCCAGCATCTGACTGCTCAGGAGGGCGTTGATCGCAACGATCGCATCCCCGACGGCCAGCTCGAG GCGCTTGACTCTCCACGATGGAGACGCATGAGCTTCGACGTGCTGGCTCCGCCCGAGGTGCAGTCGATATTTGAG CAGGATCCCGAACCTCGTGCGGCAGCCTACACCGTCTCGGCCGCCTGGCGAGGCTTTCAAGTAGCATTTGCCCTC GTCTCGTGCGCTCTTGCATCGGGCATCGTCTTTGGCTTTGCCTCCATCAAGCCCGTCTTTATTGCCCGCGGCGTC TACTACGAGCTCTGCCGGCCCGACGGCTCGTCTGAGCCATGCGAGGCCATTAGTTCTCTCCACTCGGCGCCCCAG GGCTGCCGCCATGCCTGTCCAGACCAAGATATGCGTCTCAATCTACTCTTCATTGTAGCCTCCATTACTACAAAT GTCTCGTCTCTGTTTGCTGGTACCGTGCTGGATCGCCATGGCCGCAGGGCCTGCGTCACCGCCAGCGCCCTCTTT CTCGCCCTCGGCAGTGCCTTTATGGCTGCCTCTGACCCGCTCATTGGTGCAAACGGCTACTTGGTCGGCAACTTT TTCCTCAGCTTGGGAGGTTCATTTCTGCTCTTGCCTAGCTTCCAATTGTCCAATGCCTTCCCCAAGTACTCGGGA GTCATTGTGGCTCTAGTAACCTGTGCCTTTGACTCGTCGTCGGCCGTCTTTCTCTTTTACCGCCTTGCCTGGTCG GCCTCGGGCGGCGCCTTTACCCCGACTCACTTCTTTGTCGTCTACCTCGTCGTGCCATTGGCCATTTTGATTGGA GAGTGGACCGTTATGCCCGCCCAGCCCTATCACATTATTCCCGAACTCGAGCTCAAGCTTGACAAGGCCCGCGAG TCGGACCACGACTTTCACACTTCAGACGACGACATCTCGGACGACGCAGAGCTCTTCCGAGTGCGCAGCAACCGC GCGGACCGTCGCCTCACCGAGGTTGGCCAAATCGAGAGCCTCACGGGAAATGCTGATGAGCGGCGAGAGCGCGCG CAGCAAGAAGGCGACCGCCTGGCCGCCAGCGGCGTCTGGGGCGTGCTTCACGGCCTCTCGGCCCGGGAGCAAATG AAGACGCCCTGGTTCATCCTCCTCCTCGTTTTCACAGCGCTGCAGATGCTGCGGATAAACTACTTTATTGCATCC ATTAGATCCCAGTACGAGTATCTTTTGGGTTCGGAGCGGGATGCCGTCTTGGTCAACAAGTTTTTTGATGCTGCT CTGCCAATAGGTGGTGTTGCGTCGACGCCCTTTATTGCCGTCGTCTTGAACAATATGAGCGTCGCCGTCATGCTC GCCCTCCTTACCTTTTACGTTGTTCTTATAGGTTTGTTGAACTGCCTCCCGTACATGTGGGCTGCTTTGGCGACA GTGGTTAGCTTTGTCGTCTTTCGCCCTTTTTACTATTCCGCCGTCTCGCATACAGCAACCACCATTTTCGGCTTT GCAACATTTGGTCGCGTCTACGGCACCATTATATTCGTCTCGGGTCTCTTCAACATTTCACAGTATGGCCTCGAT GCCCTTACCAATGGGCCGCTCAGCGGAAACCCCACGCCCGTTAATATCGTCATTGCAGCGGTGAGCACCGTCGTT GGTGTTGTACTGACTCTGTTTGTCCTGCAAAAGAGCAAGAGCTACAGACAAGTATCGCTCAAGGCAAGCAGCGAG CGAGGAAGCCTGGTGTCGGGGTCGCGTGTCAATGGCTACGGAACTCTTCATTAA |
| Gene | >OphauB2|3832 ATGTCCCTGGCCCAGCATCTGACTGCTCAGGAGGGCGTTGATCGCAACGATCGCATCCCCGACGGCCAGCTCGAG GCGCTTGACTCTCCACGATGGAGACGCATGAGCTTCGACGTGCTGGCTCCGCCCGAGGTGCAGTCGATATTTGAG CAGGATCCCGAACCTCGTGCGGCAGCCTACACCGTCTCGGCCGCCTGGCGAGGCTGTAAGGTCATCTATTCCCGT GTCGCATCCAGCGTCCTGCTGACTCTTGTCCGTTTTCTTGCCGCCATCTAGTTCAAGTAGCATTTGCCCTCGTCT CGTGCGCTCTTGCATCGGGCATCGTCTTTGGCTTTGCCTCCATCAAGCCCGTCTTTATTGCCCGCGGCGTCTACT ACGAGCTCTGCCGGCCCGACGGCTCGTCTGAGCCATGCGAGGCCATTAGTTCTCTCCACTCGGCGCCCCAGGGCT GCCGCCATGCCTGTCCAGACCAAGATATGCGTCTCAATCTACTCTTCATTGTAGCCTCCATTACTACAAATGTCT CGTCTCTGTTTGCTGGTACCGTGCTGGATCGCCATGGCCGCAGGGCCTGCGTCACCGCCAGCGCCCTCTTTCTCG CCCTCGGCAGTGCCTTTATGGCTGCCTCTGACCCGCTCATTGGTGCAAACGGCTACTTGGTCGGCAACTTTTTCC TCAGCTTGGGAGGTTCATTTCTGCTCTTGCCTAGCTTCCAATTGTCCAATGCCTTCCCCAAGTACTCGGGAGTCA TTGTGGCTCTAGTAACCTGTGCCTTTGACTCGTCGTCGGCCGTCTTTCTCTTTTACCGCCTTGCCTGGTCGGCCT CGGGCGGCGCCTTTACCCCGACTCACTTCTTTGTCGTCTACCTCGTCGTGCCATTGGCCATTTTGATTGGAGAGT GGACCGTTATGCCCGCCCAGCCCTATCACATTATTCCCGAACTCGAGCTCAAGCTTGACAAGGCCCGCGAGTCGG ACCACGACTTTCACACTTCAGACGACGACATCTCGGACGACGCAGAGCTCTTCCGAGTGCGCAGCAACCGCGCGG ACCGTCGCCTCACCGAGGTTGGCCAAATCGAGAGCCTCACGGGAAATGCTGATGAGCGGCGAGAGCGCGCGCAGC AAGAAGGCGACCGCCTGGCCGCCAGCGGCGTCTGGGGCGTGCTTCACGGCCTCTCGGCCCGGGAGCAAATGAAGA CGCCCTGGTTCATCCTCCTCCTCGTTTTCACAGCGCTGCAGATGCTGCGGATAAACTACTTTATTGCATCCATTA GATCCCAGTACGAGTATCTTTTGGGTTCGGAGCGGGATGCCGTCTTGGTCAACAAGTTTTTTGATGCTGCTCTGC CAATAGGTGGTGTTGCGTCGACGCCCTTTATTGCCGTCGTCTTGAACAATATGAGCGTCGCCGTCATGCTCGCCC TCCTTACCTTTTACGTTGTTCTTATAGGTTTGTTGAACTGCCTCCCGTACATGTGGGCTGCTTTGGCGACAGTGG TTAGCTTTGTCGTCTTTCGCCCTTTTTACTATTCCGCCGTCTCGTAAGTGAAACATTGATCTGCATCTCCCCTAC ACCTCCACCGCGGAGAATAAACAGAGGAAAAAGAAACCACGAAAAAAAGAAACAAGACGCCACCAAGACAGAAAC AGGCAACTAACCTTCTTCTTTAGGCATACAGCAACCACCATTTTCGGCTTTGCAACATTTGGTCGCGTCTACGGC ACCATTATATTCGTCTCGGGTCTCTTCAACATTTCACAGTATGGCCTCGATGCCCTTACCAATGGGCCGCTCAGC GGAAACCCCACGCCCGTTAATATCGTCATTGCAGCGGTGAGCACCGTCGTTGGTGTTGTACTGACTCTGTTTGTC CTGCAAAAGAGCAAGAGCTACAGACAAGTATCGCTCAAGGCAAGCAGCGAGCGAGGAAGCCTGGTGTCGGGGTCG CGTGTCAATGGCTACGGAACTCTTCATTAA |