© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3693 |
| Gene name | |
| Location | Contig_235:10572..11633 |
| Strand | - |
| Gene length (bp) | 1061 |
| Transcript length (bp) | 618 |
| Coding sequence length (bp) | 618 |
| Protein length (aa) | 206 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02737 | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | 1.8E-12 | 7 | 106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D7B2S5|LCDH_NOCDD | L-carnitine dehydrogenase OS=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) GN=lcdH PE=3 SV=1 | 7 | 106 | 2.0E-24 |
| sp|Q88R32|LCDH_PSEPK | L-carnitine dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=lcdH PE=3 SV=1 | 7 | 107 | 8.0E-22 |
| sp|Q9HTH8|LCDH_PSEAE | L-carnitine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lcdH PE=1 SV=1 | 7 | 107 | 4.0E-21 |
| sp|Q8CQB9|LCDH_STAES | L-carnitine dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lcdH PE=3 SV=1 | 6 | 105 | 9.0E-21 |
| sp|D7URM0|LCDH_PSESP | L-carnitine dehydrogenase OS=Pseudomonas sp. GN=lcdH PE=1 SV=1 | 7 | 107 | 2.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D7B2S5|LCDH_NOCDD | L-carnitine dehydrogenase OS=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) GN=lcdH PE=3 SV=1 | 7 | 106 | 2.0E-24 |
| sp|Q88R32|LCDH_PSEPK | L-carnitine dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=lcdH PE=3 SV=1 | 7 | 107 | 8.0E-22 |
| sp|Q9HTH8|LCDH_PSEAE | L-carnitine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lcdH PE=1 SV=1 | 7 | 107 | 4.0E-21 |
| sp|Q8CQB9|LCDH_STAES | L-carnitine dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lcdH PE=3 SV=1 | 6 | 105 | 9.0E-21 |
| sp|D7URM0|LCDH_PSESP | L-carnitine dehydrogenase OS=Pseudomonas sp. GN=lcdH PE=1 SV=1 | 7 | 107 | 2.0E-20 |
| sp|Q93RX5|LCDH_STRCO | L-carnitine dehydrogenase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=lcdH PE=3 SV=1 | 8 | 107 | 3.0E-20 |
| sp|Q4V182|LCDH_BACCZ | L-carnitine dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=lcdH PE=3 SV=1 | 8 | 105 | 1.0E-19 |
| sp|B1VLT7|LCDH_STRGG | L-carnitine dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=lcdH PE=3 SV=1 | 8 | 114 | 1.0E-19 |
| sp|Q4ZSC0|LCDH_PSEU2 | L-carnitine dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lcdH PE=3 SV=1 | 7 | 107 | 1.0E-18 |
| sp|Q8CUW0|LCDH_OCEIH | L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=lcdH PE=3 SV=1 | 8 | 105 | 7.0E-18 |
| sp|Q63MT0|LCDH_BURPS | L-carnitine dehydrogenase OS=Burkholderia pseudomallei (strain K96243) GN=lcdH PE=3 SV=1 | 7 | 117 | 2.0E-17 |
| sp|Q62DG4|LCDH_BURMA | L-carnitine dehydrogenase OS=Burkholderia mallei (strain ATCC 23344) GN=lcdH PE=3 SV=2 | 7 | 117 | 1.0E-16 |
| sp|Q8CUW0|LCDH_OCEIH | L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=lcdH PE=3 SV=1 | 92 | 205 | 2.0E-06 |
| sp|Q92NF5|LCDH_RHIME | L-carnitine dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=lcdH PE=3 SV=1 | 9 | 107 | 3.0E-06 |
| sp|Q98CR3|LCDH_RHILO | L-carnitine dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=lcdH PE=3 SV=1 | 20 | 106 | 4.0E-06 |
| sp|D7UNT2|LCDH_RHISP | L-carnitine dehydrogenase OS=Rhizobium sp. GN=lcdH PE=1 SV=1 | 9 | 107 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070403 | NAD+ binding | Yes |
| GO:0006631 | fatty acid metabolic process | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0051287 | NAD binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043168 | anion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3693 MSSSPMTIGVVGTGVIGSSWIGLFLARGHKVLVSSPSKGSDKRLEEHLKSIWPTLKERGLAPGASLSNYKFVGTS LKEHYKDVDFIQENAPERVDLKNDLIAEIDAGYTCVTSSLGPRWAVNGPLESNALSSGGGADGFRHYLEHLGPAM QGWLKDMQANSMVYDTKSLDELSASVNKELQGGNIQEVERRRDQLLLRILCLKEE* |
| Coding | >OphauB2|3693 ATGTCTTCATCACCTATGACGATTGGCGTGGTCGGTACAGGAGTTATCGGGTCGTCGTGGATCGGTCTATTCCTC GCCCGTGGCCATAAGGTACTTGTTTCTAGTCCTTCCAAGGGATCGGATAAGAGGCTTGAGGAGCACCTTAAGAGC ATCTGGCCTACTCTCAAGGAAAGGGGACTTGCTCCAGGCGCATCGCTATCCAACTATAAGTTCGTCGGTACTAGC CTTAAAGAGCACTATAAGGATGTCGACTTTATCCAAGAGAATGCGCCTGAAAGAGTGGACCTTAAAAACGATTTA ATTGCTGAAATAGATGCCGGTTATACCTGCGTAACTAGCAGTCTCGGACCGCGTTGGGCTGTTAATGGACCTCTC GAGTCTAATGCGCTAAGTAGCGGTGGCGGCGCTGATGGGTTTAGACATTACCTTGAGCATTTGGGACCTGCTATG CAAGGTTGGCTAAAGGACATGCAAGCAAATAGCATGGTTTATGATACCAAGAGCCTTGATGAACTAAGCGCCAGT GTCAATAAGGAACTTCAAGGAGGAAATATACAAGAGGTCGAACGCCGACGAGACCAGCTCCTCCTACGAATTTTA TGTTTAAAAGAAGAGTAA |
| Transcript | >OphauB2|3693 ATGTCTTCATCACCTATGACGATTGGCGTGGTCGGTACAGGAGTTATCGGGTCGTCGTGGATCGGTCTATTCCTC GCCCGTGGCCATAAGGTACTTGTTTCTAGTCCTTCCAAGGGATCGGATAAGAGGCTTGAGGAGCACCTTAAGAGC ATCTGGCCTACTCTCAAGGAAAGGGGACTTGCTCCAGGCGCATCGCTATCCAACTATAAGTTCGTCGGTACTAGC CTTAAAGAGCACTATAAGGATGTCGACTTTATCCAAGAGAATGCGCCTGAAAGAGTGGACCTTAAAAACGATTTA ATTGCTGAAATAGATGCCGGTTATACCTGCGTAACTAGCAGTCTCGGACCGCGTTGGGCTGTTAATGGACCTCTC GAGTCTAATGCGCTAAGTAGCGGTGGCGGCGCTGATGGGTTTAGACATTACCTTGAGCATTTGGGACCTGCTATG CAAGGTTGGCTAAAGGACATGCAAGCAAATAGCATGGTTTATGATACCAAGAGCCTTGATGAACTAAGCGCCAGT GTCAATAAGGAACTTCAAGGAGGAAATATACAAGAGGTCGAACGCCGACGAGACCAGCTCCTCCTACGAATTTTA TGTTTAAAAGAAGAGTAA |
| Gene | >OphauB2|3693 ATGTCTTCATCACCTATGACGATTGGCGTGGTCGGTACAGGAGTTATCGGGTCGTCGTGGATCGGTCTATTCCTC GCCCGTGGCCATAAGGTACTTGTTTCTAGTCCTTCCAAGGGATCGGATAAGAGGCTTGAGGAGCACCTTAAGAGC ATCTGGCCTACTCTCAAGGAAAGGGGACTTGCTCCAGGCGCATCGCTATCCAACTATAAGTTCGTCGGTACTAGC CTTAAAGAGCACTATAAGGATGTCGACTTTATCCAAGAGGTTAGTAATAATAATATAGTCTTCCCTTAGTAGCGT CTTTACTAATACTATAAAGAATGCGCCTGAAAGAGTGGACCTTAAAAACGATTTAATTGCTGAAATAGATGCCGG TTGTAGGCCAGATGTGATCATTGCGTCATCTTCTTCTGGCCTACCTAGTTCAAAATTTATTCAGAAATGCAAAGT CAATCCCAACAGAGTCCTTATCGGTCACCCATTTAACCCGCCGCATCTTATGCCGCTAGTCGAAGTTGTGCCGCA TCCCGGAACTGATAAAGCTATTATTGATAAAGCTATTAATTTTTACAAAAGCCTAAACCAACATCCTGTTCTTAT TGCGAAAGAGATACCTGGCTTCGCTGGAAACCGCCTTCAAGCAGCCCTATGCAACGAAGCATATAGTCTAGTAAG CCGAGGAGTTTTATCGGCCAAAGACCTTGGTAGGGTTAATTCCCTTACTCGATTATACTTGGATTACTACTAACT ACCTACCTTATATAGATACCTGCGTAACTAGCAGTCTCGGACCGCGTTGGGCTGTTAATGGACCTCTCGAGTCTA ATGCGCTAAGTAGCGGTGGCGGCGCTGATGGGTTTAGACATTACCTTGAGCATTTGGGACCTGCTATGCAAGGTT GGCTAAAGGACATGCAAGCAAATAGCATGGTTTATGATACCAAGAGCCTTGATGAACTAAGCGCCAGTGTCAATA AGGAACTTCAAGGAGGAAATATACAAGAGGTCGAACGCCGACGAGACCAGCTCCTCCTACGAATTTTATGTTTAA AAGAAGAGTAA |