© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3646 |
| Gene name | |
| Location | Contig_23:176414..177125 |
| Strand | + |
| Gene length (bp) | 711 |
| Transcript length (bp) | 630 |
| Coding sequence length (bp) | 630 |
| Protein length (aa) | 210 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10447 | EXOSC1 | Exosome component EXOSC1/CSL4 | 1.9E-04 | 85 | 109 |
| PF10447 | EXOSC1 | Exosome component EXOSC1/CSL4 | 5.9E-14 | 114 | 156 |
| PF14382 | ECR1_N | Exosome complex exonuclease RRP4 N-terminal region | 8.4E-11 | 10 | 45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9DAA6|EXOS1_MOUSE | Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1 | 11 | 207 | 8.0E-43 |
| sp|Q9Y3B2|EXOS1_HUMAN | Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1 | 11 | 207 | 1.0E-41 |
| sp|O59821|CSL4_SCHPO | Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2 | 40 | 208 | 4.0E-38 |
| sp|P53859|CSL4_YEAST | Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1 | 1 | 208 | 6.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000178 | exosome (RNase complex) | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1902494 | catalytic complex | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005575 | cellular_component | No |
| GO:1905354 | exoribonuclease complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3646 MALDQQMPAMAIPGDVLGSVSRYASGPGTHVYQGNVVSSLMGKVEATPPCHTRGPAKRLNKITAAIVDQRSVVSV SRRPHRSQVLPDVNDVVLARVTRLMPKQAIVAIKQIGATALHTEWQGVIRVQDVRATEKDKVKIQESFKPGDIVK AQVISLGDQANYYLSTASNELGVIMAVSDAGNDMVPISWKEFIDPETRLSELRKVAKPS* |
| Coding | >OphauB2|3646 ATGGCCCTCGACCAACAGATGCCCGCCATGGCAATCCCTGGCGATGTTCTGGGTTCCGTTAGCCGCTACGCTTCC GGCCCAGGCACCCATGTCTACCAGGGCAACGTCGTTTCGTCTCTCATGGGCAAAGTCGAGGCCACGCCGCCCTGC CACACTCGCGGGCCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGTCGACCAGCGCTCCGTCGTCTCCGTC TCGCGCCGTCCGCACCGCAGTCAGGTCTTGCCCGACGTCAACGATGTGGTCCTTGCCCGCGTCACTCGCCTCATG CCCAAGCAGGCCATTGTCGCCATTAAGCAGATTGGGGCAACGGCCCTGCATACAGAGTGGCAGGGCGTTATACGC GTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAGTCTTTTAAGCCGGGAGACATTGTCAAG GCTCAAGTGATCTCCTTGGGCGACCAGGCCAACTATTATCTATCGACGGCATCAAACGAGCTAGGAGTCATCATG GCCGTTAGCGACGCAGGCAACGACATGGTTCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGTCTCAGT GAGCTGAGAAAAGTTGCCAAACCGAGCTGA |
| Transcript | >OphauB2|3646 ATGGCCCTCGACCAACAGATGCCCGCCATGGCAATCCCTGGCGATGTTCTGGGTTCCGTTAGCCGCTACGCTTCC GGCCCAGGCACCCATGTCTACCAGGGCAACGTCGTTTCGTCTCTCATGGGCAAAGTCGAGGCCACGCCGCCCTGC CACACTCGCGGGCCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGTCGACCAGCGCTCCGTCGTCTCCGTC TCGCGCCGTCCGCACCGCAGTCAGGTCTTGCCCGACGTCAACGATGTGGTCCTTGCCCGCGTCACTCGCCTCATG CCCAAGCAGGCCATTGTCGCCATTAAGCAGATTGGGGCAACGGCCCTGCATACAGAGTGGCAGGGCGTTATACGC GTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAGTCTTTTAAGCCGGGAGACATTGTCAAG GCTCAAGTGATCTCCTTGGGCGACCAGGCCAACTATTATCTATCGACGGCATCAAACGAGCTAGGAGTCATCATG GCCGTTAGCGACGCAGGCAACGACATGGTTCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGTCTCAGT GAGCTGAGAAAAGTTGCCAAACCGAGCTGA |
| Gene | >OphauB2|3646 ATGGCCCTCGACCAACAGATGCCCGCCATGGCAATCCCTGGCGATGTTCTGGGTTCCGTTAGCCGCTACGCTTCC GGCCCAGGCACCCATGTCTACCAGGGCAACGTCGTTTCGTCTCTCATGGGCAAAGTCGAGGCCACGCCGCCCTGC CACACTCGCGGGCCCGCAAAGCGCCTCAACAAGATCACGGCAGCCATTGTCGACCAGCGCTCCGTCGTCTCCGTC TCGCGCCGTCCGCACCGCAGTCAGGTCTTGCCCGACGTCAACGATGTGGTCCTTGCCCGCGTCACTCGCCTCATG CCCAAGCAGGCCATTGTCGCCATTAAGCAGATTGGGGCAACGGCCCTGCATACAGAGTGGCAGGGCGTTATACGC GTACAGGATGTGAGGGCCACGGAAAAGGACAAGGTCAAGATTCAGGAGTCTTTTAAGCCGGGAGACATTGTCAAG GCTCAAGTGGTGAGACCCGGCACACATCTCTTCTTCCCCACGACATGCCCAATATATGCTTACTACTACTCTTCT TCCTCCCCCCCCCAGATCTCCTTGGGCGACCAGGCCAACTATTATCTATCGACGGCATCAAACGAGCTAGGAGTC ATCATGGCCGTTAGCGACGCAGGCAACGACATGGTTCCCATTAGCTGGAAGGAATTTATAGACCCCGAGACACGT CTCAGTGAGCTGAGAAAAGTTGCCAAACCGAGCTGA |