Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3636
Gene name
LocationContig_23:148692..149360
Strand+
Gene length (bp)668
Transcript length (bp)606
Coding sequence length (bp)606
Protein length (aa) 202

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 9.1E-34 98 194
PF18477 PIN_9 PIN like domain 4.5E-10 75 177

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 196 2.0E-78
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 1 200 3.0E-73
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 199 4.0E-72
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 199 4.0E-72
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 199 4.0E-72
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Swissprot ID Swissprot Description Start End E-value
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 196 2.0E-78
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 1 200 3.0E-73
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 199 4.0E-72
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 199 4.0E-72
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 199 4.0E-72
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 1 199 5.0E-71
sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1 26 196 9.0E-58
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 72 193 4.0E-13
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 62 194 2.0E-12
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 62 194 3.0E-12
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 62 194 2.0E-11
sp|Q58716|VAPC4_METJA Ribonuclease VapC4 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=vapC4 PE=3 SV=1 73 190 5.0E-09
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 61 198 4.0E-07
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GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:0032991 protein-containing complex No
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0005575 cellular_component No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2551
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7603
Ophiocordyceps australis map64 (Brazil) OphauB2|3636 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|05057
Ophiocordyceps camponoti-rufipedis Ophun1|3953
Ophiocordyceps kimflemingae Ophio5|4584
Ophiocordyceps subramaniannii Hirsu2|3778

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3636
MGVAKKTRKFGQVKRLLGKQDARLKSNREKAEAEAKAKAKAEKKTANGELVRQVTQMPSNMFFQHNTALVPPYNV
LVDTNFLSHTVQRKLSLLESMMDCLYAKCNPIITSCVMAELEKLGPKYRLALRVARDERWQRLECDHKGVYADDC
LVDRVTKNRIYIVGTNDKALKQRLRKIPGVPLMSVARGKYVIERLPGAPDS*
Coding >OphauB2|3636
ATGGGTGTCGCGAAAAAGACGAGAAAGTTTGGTCAAGTCAAGCGCCTGCTGGGCAAGCAAGATGCCCGGCTCAAG
AGCAACCGCGAAAAGGCCGAGGCCGAGGCAAAGGCAAAGGCAAAGGCGGAGAAGAAGACAGCCAACGGAGAATTG
GTGCGCCAAGTGACGCAGATGCCGAGCAATATGTTCTTCCAGCACAACACAGCCCTGGTACCGCCCTACAATGTC
CTGGTGGACACCAACTTCCTCAGCCATACTGTTCAGCGCAAGCTGTCGCTGCTTGAGTCCATGATGGACTGTCTC
TACGCCAAATGCAACCCCATAATCACCTCGTGCGTCATGGCTGAACTCGAGAAGCTGGGACCCAAATATCGCCTG
GCTCTCCGTGTCGCCCGTGACGAGCGGTGGCAGCGCCTCGAGTGTGACCACAAGGGTGTCTATGCAGATGACTGC
CTCGTCGACCGAGTTACAAAGAACCGCATTTACATTGTTGGCACAAATGACAAGGCTTTGAAGCAAAGATTACGC
AAAATTCCGGGCGTGCCTCTGATGAGCGTTGCCAGGGGCAAATACGTAATAGAAAGATTACCAGGGGCACCCGAC
TCATAA
Transcript >OphauB2|3636
ATGGGTGTCGCGAAAAAGACGAGAAAGTTTGGTCAAGTCAAGCGCCTGCTGGGCAAGCAAGATGCCCGGCTCAAG
AGCAACCGCGAAAAGGCCGAGGCCGAGGCAAAGGCAAAGGCAAAGGCGGAGAAGAAGACAGCCAACGGAGAATTG
GTGCGCCAAGTGACGCAGATGCCGAGCAATATGTTCTTCCAGCACAACACAGCCCTGGTACCGCCCTACAATGTC
CTGGTGGACACCAACTTCCTCAGCCATACTGTTCAGCGCAAGCTGTCGCTGCTTGAGTCCATGATGGACTGTCTC
TACGCCAAATGCAACCCCATAATCACCTCGTGCGTCATGGCTGAACTCGAGAAGCTGGGACCCAAATATCGCCTG
GCTCTCCGTGTCGCCCGTGACGAGCGGTGGCAGCGCCTCGAGTGTGACCACAAGGGTGTCTATGCAGATGACTGC
CTCGTCGACCGAGTTACAAAGAACCGCATTTACATTGTTGGCACAAATGACAAGGCTTTGAAGCAAAGATTACGC
AAAATTCCGGGCGTGCCTCTGATGAGCGTTGCCAGGGGCAAATACGTAATAGAAAGATTACCAGGGGCACCCGAC
TCATAA
Gene >OphauB2|3636
ATGGGTGTCGCGAAAAAGACGAGAAAGTTTGGTCAAGTGCGGTTATCGATAAGTCGAAAAGCAGTCGTCGGCCAC
ATGTCAGACTGACTGGTGGACAGGTCAAGCGCCTGCTGGGCAAGCAAGATGCCCGGCTCAAGAGCAACCGCGAAA
AGGCCGAGGCCGAGGCAAAGGCAAAGGCAAAGGCGGAGAAGAAGACAGCCAACGGAGAATTGGTGCGCCAAGTGA
CGCAGATGCCGAGCAATATGTTCTTCCAGCACAACACAGCCCTGGTACCGCCCTACAATGTCCTGGTGGACACCA
ACTTCCTCAGCCATACTGTTCAGCGCAAGCTGTCGCTGCTTGAGTCCATGATGGACTGTCTCTACGCCAAATGCA
ACCCCATAATCACCTCGTGCGTCATGGCTGAACTCGAGAAGCTGGGACCCAAATATCGCCTGGCTCTCCGTGTCG
CCCGTGACGAGCGGTGGCAGCGCCTCGAGTGTGACCACAAGGGTGTCTATGCAGATGACTGCCTCGTCGACCGAG
TTACAAAGAACCGCATTTACATTGTTGGCACAAATGACAAGGCTTTGAAGCAAAGATTACGCAAAATTCCGGGCG
TGCCTCTGATGAGCGTTGCCAGGGGCAAATACGTAATAGAAAGATTACCAGGGGCACCCGACTCATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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