© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3605 |
| Gene name | |
| Location | Contig_23:81420..83940 |
| Strand | - |
| Gene length (bp) | 2520 |
| Transcript length (bp) | 2520 |
| Coding sequence length (bp) | 2520 |
| Protein length (aa) | 840 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 9.9E-11 | 771 | 833 |
| PF13639 | zf-RING_2 | Ring finger domain | 4.9E-08 | 806 | 833 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.1E-06 | 772 | 832 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36096|TUL1_YEAST | Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1 | 247 | 839 | 8.0E-50 |
| sp|O43085|DSC1_SCHPO | DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2 | 337 | 839 | 3.0E-41 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 446 | 468 | 22 |
| 3 | 475 | 497 | 22 |
| 4 | 587 | 609 | 22 |
| 5 | 616 | 634 | 18 |
| 6 | 644 | 666 | 22 |
| 7 | 679 | 701 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3605 MAQTRNPAAALLVVIFLIWLFLPDGGFQGQSLVLSDVVAARLARYHQGLEVLKTTSWGDFAPPRSHDEQEQGQDE DQEAKYIKLTGFRAQDGFAWQDLDDFRQRGLRLSRYAIAPVDGRQLWDVAQGEAVWTNASGTLRGEWVRRQGSVQ RSFDSYNLSRSVPEMDWVGHGVEWARNMTGATGRMMLRLEGNSSVMLYGDEEQADASQDLPLSGGVIRNVKATVT VEDTAGSGLNWEMRLWGVHWPRQGVVLLTTTSEKFEGILGLPHLTPSGSFFRSSQRLLEQMVARVLDGKSSSANM DQNMPWNSDVDNAQYTAYASPHCEFVMYAQVHPPAGLHKKQASQEVIGAIEAELQNPLGAPIRSVPRLVMSAVVW SPDCAFFLETKGPPDFAPGPADHLVGMKTEVHTHHVKMWMLVYALLVLGQVRLLKDQVKESLTPSTLGRISFWTI SAMVMVDGMTFTAAATWVSSAAATFLPTLALMFASFLSMTIGGSFLHKMHEMQQPVARLAREQTSRGSNSASGDD TPTATGAILPGPVTANRSSQQPPVIVPSDQDVAAEMAQAASAVPRPGAGSATSTPQALSFQAIVGRFILASLCLC FLAISSSTWYPRPRSLLLNFCAAAYLSLWIPQIYRNAVRNCRRALAWPFVIGQSVLRLLPIAYFWLNEDNFLYAR PDRLAFVLFVAWVWIQILVLAAQDVLGPRFGLPASWCPEAWDYHPVLREDGLEAGGLPIGLVAAPSDDHHVDALD KHASPASHAKPPAGCSLRTIDCAICREALQVPVVRAGHDDSAATGVASVFARRLYMVTPCRHVFHTTCLEGWIKF RLQCPICRDDLPPI* |
| Coding | >OphauB2|3605 ATGGCGCAGACTCGGAACCCGGCGGCGGCACTCCTTGTTGTCATCTTTCTCATCTGGCTGTTTCTGCCCGACGGC GGCTTTCAAGGCCAGTCGCTGGTCTTGTCAGACGTGGTGGCTGCTCGTCTGGCGCGCTACCACCAAGGTCTCGAG GTGCTCAAGACGACGTCATGGGGCGATTTTGCGCCGCCACGCAGCCACGACGAGCAAGAGCAAGGCCAAGACGAA GACCAAGAGGCAAAGTACATCAAGCTCACGGGGTTCCGGGCGCAGGACGGGTTTGCATGGCAGGACCTCGACGAC TTTCGGCAACGAGGCCTCAGGCTTAGCCGATACGCCATAGCTCCTGTTGACGGCCGGCAGCTGTGGGACGTGGCT CAGGGAGAGGCCGTCTGGACAAATGCATCGGGCACGCTGAGAGGCGAGTGGGTGCGGCGCCAGGGCTCGGTGCAG CGGTCCTTTGACAGCTACAATCTTAGTCGCAGCGTGCCCGAGATGGACTGGGTTGGGCATGGCGTGGAGTGGGCG CGCAACATGACGGGGGCCACAGGCCGGATGATGCTGCGGCTCGAGGGCAACAGTAGTGTCATGTTGTATGGCGAC GAGGAGCAGGCGGATGCCAGCCAGGATCTGCCGCTCTCGGGGGGGGTCATTCGCAACGTCAAGGCCACAGTGACG GTCGAGGACACGGCTGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGAGTCCACTGGCCGCGGCAGGGCGTT GTTTTGCTGACGACGACGAGCGAGAAGTTTGAGGGCATCTTGGGCCTGCCGCACCTCACGCCCAGCGGCAGCTTC TTCCGCTCCAGCCAGCGCCTGCTGGAGCAAATGGTGGCGCGGGTGCTTGACGGCAAGAGCAGCAGCGCCAACATG GACCAGAACATGCCGTGGAACTCGGACGTGGACAATGCACAGTATACGGCCTATGCCTCGCCGCACTGCGAATTC GTCATGTACGCGCAGGTGCACCCCCCGGCCGGCCTGCACAAGAAGCAGGCCTCTCAAGAGGTGATTGGGGCCATT GAGGCGGAGCTGCAGAACCCCCTGGGCGCGCCCATTCGCTCCGTGCCGCGGCTCGTCATGTCGGCCGTGGTGTGG TCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGGCCGCCCGACTTTGCGCCCGGCCCGGCCGACCACCTGGTG GGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTGTATGCCCTGCTGGTCCTCGGCCAG GTGCGCCTGCTCAAGGACCAGGTCAAGGAGTCGCTGACGCCGTCGACGCTGGGCCGCATCAGCTTCTGGACCATT AGCGCCATGGTCATGGTGGACGGCATGACCTTTACAGCCGCCGCCACTTGGGTCTCGTCGGCCGCTGCTACTTTT CTGCCCACGCTGGCCCTCATGTTTGCCTCGTTTCTCTCCATGACGATTGGCGGCAGTTTTTTGCACAAGATGCAC GAGATGCAGCAGCCAGTAGCGCGACTTGCACGCGAGCAGACGTCCCGGGGCTCCAACTCGGCTTCGGGAGACGAC ACGCCCACAGCCACCGGGGCCATCTTGCCCGGCCCGGTGACGGCGAATCGCTCCTCGCAGCAGCCGCCCGTCATT GTTCCCTCGGACCAGGACGTGGCCGCAGAAATGGCCCAAGCCGCCTCGGCCGTGCCTCGTCCTGGTGCCGGCAGC GCCACCTCGACGCCCCAGGCCCTCTCCTTCCAAGCCATTGTCGGCCGCTTCATCCTGGCCAGTCTCTGTCTCTGC TTCCTTGCCATTTCCTCGTCGACGTGGTATCCGCGGCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCCGCCTAC CTGTCTCTTTGGATCCCCCAGATTTACCGCAATGCAGTGCGCAACTGTCGCCGCGCCCTGGCATGGCCCTTTGTC ATTGGCCAATCGGTGCTGCGTCTGCTGCCCATTGCCTACTTTTGGCTCAATGAGGACAACTTTTTATACGCCCGC CCCGACCGTCTGGCCTTTGTCTTGTTTGTGGCCTGGGTCTGGATCCAGATCTTGGTGCTTGCTGCCCAGGACGTG CTTGGCCCGCGCTTTGGCCTGCCTGCCTCGTGGTGTCCCGAAGCCTGGGACTACCACCCTGTATTGCGCGAGGAT GGCCTCGAGGCGGGCGGCTTGCCCATTGGGCTCGTGGCGGCACCCTCGGACGACCACCATGTCGACGCTCTTGAT AAACACGCCTCTCCCGCCTCGCACGCAAAGCCCCCTGCTGGCTGTTCTCTGCGCACTATTGACTGCGCCATTTGC AGAGAAGCCCTACAAGTGCCAGTCGTGCGAGCTGGCCATGACGACAGCGCGGCAACGGGTGTTGCTAGCGTCTTT GCTCGCAGGCTCTACATGGTGACGCCCTGCCGCCATGTCTTTCACACCACTTGTCTCGAGGGATGGATCAAGTTT CGCCTGCAATGCCCGATTTGCCGCGACGATTTGCCGCCAATCTAG |
| Transcript | >OphauB2|3605 ATGGCGCAGACTCGGAACCCGGCGGCGGCACTCCTTGTTGTCATCTTTCTCATCTGGCTGTTTCTGCCCGACGGC GGCTTTCAAGGCCAGTCGCTGGTCTTGTCAGACGTGGTGGCTGCTCGTCTGGCGCGCTACCACCAAGGTCTCGAG GTGCTCAAGACGACGTCATGGGGCGATTTTGCGCCGCCACGCAGCCACGACGAGCAAGAGCAAGGCCAAGACGAA GACCAAGAGGCAAAGTACATCAAGCTCACGGGGTTCCGGGCGCAGGACGGGTTTGCATGGCAGGACCTCGACGAC TTTCGGCAACGAGGCCTCAGGCTTAGCCGATACGCCATAGCTCCTGTTGACGGCCGGCAGCTGTGGGACGTGGCT CAGGGAGAGGCCGTCTGGACAAATGCATCGGGCACGCTGAGAGGCGAGTGGGTGCGGCGCCAGGGCTCGGTGCAG CGGTCCTTTGACAGCTACAATCTTAGTCGCAGCGTGCCCGAGATGGACTGGGTTGGGCATGGCGTGGAGTGGGCG CGCAACATGACGGGGGCCACAGGCCGGATGATGCTGCGGCTCGAGGGCAACAGTAGTGTCATGTTGTATGGCGAC GAGGAGCAGGCGGATGCCAGCCAGGATCTGCCGCTCTCGGGGGGGGTCATTCGCAACGTCAAGGCCACAGTGACG GTCGAGGACACGGCTGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGAGTCCACTGGCCGCGGCAGGGCGTT GTTTTGCTGACGACGACGAGCGAGAAGTTTGAGGGCATCTTGGGCCTGCCGCACCTCACGCCCAGCGGCAGCTTC TTCCGCTCCAGCCAGCGCCTGCTGGAGCAAATGGTGGCGCGGGTGCTTGACGGCAAGAGCAGCAGCGCCAACATG GACCAGAACATGCCGTGGAACTCGGACGTGGACAATGCACAGTATACGGCCTATGCCTCGCCGCACTGCGAATTC GTCATGTACGCGCAGGTGCACCCCCCGGCCGGCCTGCACAAGAAGCAGGCCTCTCAAGAGGTGATTGGGGCCATT GAGGCGGAGCTGCAGAACCCCCTGGGCGCGCCCATTCGCTCCGTGCCGCGGCTCGTCATGTCGGCCGTGGTGTGG TCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGGCCGCCCGACTTTGCGCCCGGCCCGGCCGACCACCTGGTG GGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTGTATGCCCTGCTGGTCCTCGGCCAG GTGCGCCTGCTCAAGGACCAGGTCAAGGAGTCGCTGACGCCGTCGACGCTGGGCCGCATCAGCTTCTGGACCATT AGCGCCATGGTCATGGTGGACGGCATGACCTTTACAGCCGCCGCCACTTGGGTCTCGTCGGCCGCTGCTACTTTT CTGCCCACGCTGGCCCTCATGTTTGCCTCGTTTCTCTCCATGACGATTGGCGGCAGTTTTTTGCACAAGATGCAC GAGATGCAGCAGCCAGTAGCGCGACTTGCACGCGAGCAGACGTCCCGGGGCTCCAACTCGGCTTCGGGAGACGAC ACGCCCACAGCCACCGGGGCCATCTTGCCCGGCCCGGTGACGGCGAATCGCTCCTCGCAGCAGCCGCCCGTCATT GTTCCCTCGGACCAGGACGTGGCCGCAGAAATGGCCCAAGCCGCCTCGGCCGTGCCTCGTCCTGGTGCCGGCAGC GCCACCTCGACGCCCCAGGCCCTCTCCTTCCAAGCCATTGTCGGCCGCTTCATCCTGGCCAGTCTCTGTCTCTGC TTCCTTGCCATTTCCTCGTCGACGTGGTATCCGCGGCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCCGCCTAC CTGTCTCTTTGGATCCCCCAGATTTACCGCAATGCAGTGCGCAACTGTCGCCGCGCCCTGGCATGGCCCTTTGTC ATTGGCCAATCGGTGCTGCGTCTGCTGCCCATTGCCTACTTTTGGCTCAATGAGGACAACTTTTTATACGCCCGC CCCGACCGTCTGGCCTTTGTCTTGTTTGTGGCCTGGGTCTGGATCCAGATCTTGGTGCTTGCTGCCCAGGACGTG CTTGGCCCGCGCTTTGGCCTGCCTGCCTCGTGGTGTCCCGAAGCCTGGGACTACCACCCTGTATTGCGCGAGGAT GGCCTCGAGGCGGGCGGCTTGCCCATTGGGCTCGTGGCGGCACCCTCGGACGACCACCATGTCGACGCTCTTGAT AAACACGCCTCTCCCGCCTCGCACGCAAAGCCCCCTGCTGGCTGTTCTCTGCGCACTATTGACTGCGCCATTTGC AGAGAAGCCCTACAAGTGCCAGTCGTGCGAGCTGGCCATGACGACAGCGCGGCAACGGGTGTTGCTAGCGTCTTT GCTCGCAGGCTCTACATGGTGACGCCCTGCCGCCATGTCTTTCACACCACTTGTCTCGAGGGATGGATCAAGTTT CGCCTGCAATGCCCGATTTGCCGCGACGATTTGCCGCCAATCTAG |
| Gene | >OphauB2|3605 ATGGCGCAGACTCGGAACCCGGCGGCGGCACTCCTTGTTGTCATCTTTCTCATCTGGCTGTTTCTGCCCGACGGC GGCTTTCAAGGCCAGTCGCTGGTCTTGTCAGACGTGGTGGCTGCTCGTCTGGCGCGCTACCACCAAGGTCTCGAG GTGCTCAAGACGACGTCATGGGGCGATTTTGCGCCGCCACGCAGCCACGACGAGCAAGAGCAAGGCCAAGACGAA GACCAAGAGGCAAAGTACATCAAGCTCACGGGGTTCCGGGCGCAGGACGGGTTTGCATGGCAGGACCTCGACGAC TTTCGGCAACGAGGCCTCAGGCTTAGCCGATACGCCATAGCTCCTGTTGACGGCCGGCAGCTGTGGGACGTGGCT CAGGGAGAGGCCGTCTGGACAAATGCATCGGGCACGCTGAGAGGCGAGTGGGTGCGGCGCCAGGGCTCGGTGCAG CGGTCCTTTGACAGCTACAATCTTAGTCGCAGCGTGCCCGAGATGGACTGGGTTGGGCATGGCGTGGAGTGGGCG CGCAACATGACGGGGGCCACAGGCCGGATGATGCTGCGGCTCGAGGGCAACAGTAGTGTCATGTTGTATGGCGAC GAGGAGCAGGCGGATGCCAGCCAGGATCTGCCGCTCTCGGGGGGGGTCATTCGCAACGTCAAGGCCACAGTGACG GTCGAGGACACGGCTGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGAGTCCACTGGCCGCGGCAGGGCGTT GTTTTGCTGACGACGACGAGCGAGAAGTTTGAGGGCATCTTGGGCCTGCCGCACCTCACGCCCAGCGGCAGCTTC TTCCGCTCCAGCCAGCGCCTGCTGGAGCAAATGGTGGCGCGGGTGCTTGACGGCAAGAGCAGCAGCGCCAACATG GACCAGAACATGCCGTGGAACTCGGACGTGGACAATGCACAGTATACGGCCTATGCCTCGCCGCACTGCGAATTC GTCATGTACGCGCAGGTGCACCCCCCGGCCGGCCTGCACAAGAAGCAGGCCTCTCAAGAGGTGATTGGGGCCATT GAGGCGGAGCTGCAGAACCCCCTGGGCGCGCCCATTCGCTCCGTGCCGCGGCTCGTCATGTCGGCCGTGGTGTGG TCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGGCCGCCCGACTTTGCGCCCGGCCCGGCCGACCACCTGGTG GGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTGTATGCCCTGCTGGTCCTCGGCCAG GTGCGCCTGCTCAAGGACCAGGTCAAGGAGTCGCTGACGCCGTCGACGCTGGGCCGCATCAGCTTCTGGACCATT AGCGCCATGGTCATGGTGGACGGCATGACCTTTACAGCCGCCGCCACTTGGGTCTCGTCGGCCGCTGCTACTTTT CTGCCCACGCTGGCCCTCATGTTTGCCTCGTTTCTCTCCATGACGATTGGCGGCAGTTTTTTGCACAAGATGCAC GAGATGCAGCAGCCAGTAGCGCGACTTGCACGCGAGCAGACGTCCCGGGGCTCCAACTCGGCTTCGGGAGACGAC ACGCCCACAGCCACCGGGGCCATCTTGCCCGGCCCGGTGACGGCGAATCGCTCCTCGCAGCAGCCGCCCGTCATT GTTCCCTCGGACCAGGACGTGGCCGCAGAAATGGCCCAAGCCGCCTCGGCCGTGCCTCGTCCTGGTGCCGGCAGC GCCACCTCGACGCCCCAGGCCCTCTCCTTCCAAGCCATTGTCGGCCGCTTCATCCTGGCCAGTCTCTGTCTCTGC TTCCTTGCCATTTCCTCGTCGACGTGGTATCCGCGGCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCCGCCTAC CTGTCTCTTTGGATCCCCCAGATTTACCGCAATGCAGTGCGCAACTGTCGCCGCGCCCTGGCATGGCCCTTTGTC ATTGGCCAATCGGTGCTGCGTCTGCTGCCCATTGCCTACTTTTGGCTCAATGAGGACAACTTTTTATACGCCCGC CCCGACCGTCTGGCCTTTGTCTTGTTTGTGGCCTGGGTCTGGATCCAGATCTTGGTGCTTGCTGCCCAGGACGTG CTTGGCCCGCGCTTTGGCCTGCCTGCCTCGTGGTGTCCCGAAGCCTGGGACTACCACCCTGTATTGCGCGAGGAT GGCCTCGAGGCGGGCGGCTTGCCCATTGGGCTCGTGGCGGCACCCTCGGACGACCACCATGTCGACGCTCTTGAT AAACACGCCTCTCCCGCCTCGCACGCAAAGCCCCCTGCTGGCTGTTCTCTGCGCACTATTGACTGCGCCATTTGC AGAGAAGCCCTACAAGTGCCAGTCGTGCGAGCTGGCCATGACGACAGCGCGGCAACGGGTGTTGCTAGCGTCTTT GCTCGCAGGCTCTACATGGTGACGCCCTGCCGCCATGTCTTTCACACCACTTGTCTCGAGGGATGGATCAAGTTT CGCCTGCAATGCCCGATTTGCCGCGACGATTTGCCGCCAATCTAG |