© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3584 |
| Gene name | |
| Location | Contig_23:16764..17930 |
| Strand | + |
| Gene length (bp) | 1166 |
| Transcript length (bp) | 387 |
| Coding sequence length (bp) | 387 |
| Protein length (aa) | 129 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13656 | RNA_pol_L_2 | RNA polymerase Rpb3/Rpb11 dimerisation domain | 5.4E-23 | 31 | 102 |
| PF01193 | RNA_pol_L | RNA polymerase Rpb3/Rpb11 dimerisation domain | 6.8E-06 | 33 | 98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VJE4|RPB11_DROME | DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=3 SV=1 | 1 | 105 | 8.0E-24 |
| sp|P38902|RPB11_YEAST | DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1 SV=1 | 1 | 115 | 2.0E-22 |
| sp|O08740|RPB11_MOUSE | DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1 | 1 | 105 | 2.0E-22 |
| sp|P52435|RPB11_HUMAN | DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1 | 1 | 105 | 3.0E-22 |
| sp|Q32P79|RPB11_BOVIN | DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1 | 1 | 105 | 3.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VJE4|RPB11_DROME | DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=3 SV=1 | 1 | 105 | 8.0E-24 |
| sp|P38902|RPB11_YEAST | DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1 SV=1 | 1 | 115 | 2.0E-22 |
| sp|O08740|RPB11_MOUSE | DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1 | 1 | 105 | 2.0E-22 |
| sp|P52435|RPB11_HUMAN | DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1 | 1 | 105 | 3.0E-22 |
| sp|Q32P79|RPB11_BOVIN | DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1 | 1 | 105 | 3.0E-22 |
| sp|Q7PVQ9|RPB11_ANOGA | DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2 | 1 | 108 | 6.0E-22 |
| sp|Q86JJ5|RPB11_DICDI | DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1 | 1 | 120 | 3.0E-21 |
| sp|Q9H1A7|RPB1C_HUMAN | DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1 | 1 | 105 | 1.0E-19 |
| sp|P87123|RPB11_SCHPO | DNA-directed RNA polymerase II subunit RPB11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb11 PE=1 SV=1 | 1 | 118 | 2.0E-19 |
| sp|Q9GZM3|RPB1B_HUMAN | DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=2 | 1 | 105 | 7.0E-19 |
| sp|Q9XVH6|RPB11_CAEEL | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1 | 1 | 120 | 5.0E-18 |
| sp|Q60SM4|RPB11_CAEBR | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1 | 1 | 105 | 5.0E-18 |
| sp|Q38859|NRPBB_ARATH | DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1 | 1 | 116 | 1.0E-17 |
| sp|A4YHV0|RPOL_METS5 | DNA-directed RNA polymerase subunit L OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpoL PE=3 SV=1 | 29 | 110 | 5.0E-09 |
| sp|Q96YA7|RPOL_SULTO | DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoL PE=3 SV=1 | 19 | 92 | 2.0E-08 |
| sp|Q4YZZ7|RPB11_PLABA | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1 | 2 | 74 | 6.0E-08 |
| sp|P46217|RPOL_SULAC | DNA-directed RNA polymerase subunit L OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1 | 19 | 92 | 7.0E-08 |
| sp|Q4XS21|RPB11_PLACH | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium chabaudi GN=PC000833.03.0 PE=3 SV=1 | 2 | 110 | 7.0E-08 |
| sp|Q09177|RPAC2_SCHPO | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc19 PE=2 SV=1 | 33 | 109 | 7.0E-08 |
| sp|P28000|RPAC2_YEAST | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 | 4 | 106 | 1.0E-07 |
| sp|Q980K0|RPOL_SULSO | DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL PE=1 SV=1 | 19 | 94 | 2.0E-07 |
| sp|Q8IER7|RPB11_PLAF7 | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1 | 2 | 116 | 3.0E-07 |
| sp|Q9Y2S0|RPAC2_HUMAN | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1 | 33 | 100 | 4.0E-07 |
| sp|B6YTH7|RPOL_THEON | DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus (strain NA1) GN=rpoL PE=3 SV=1 | 28 | 101 | 8.0E-07 |
| sp|C3NFY8|RPOL_SULIN | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|C3MZG6|RPOL_SULIA | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain M.16.27) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|C4KIP6|RPOL_SULIK | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|C3MRD1|RPOL_SULIL | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|C3MXM0|RPOL_SULIM | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|C3N7I8|RPOL_SULIY | DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1 | 19 | 92 | 1.0E-06 |
| sp|Q1RMG8|RPAC2_BOVIN | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1 | 33 | 105 | 1.0E-06 |
| sp|Q6DRI4|RPAC2_DANRE | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1 | 33 | 110 | 2.0E-06 |
| sp|Q5XK67|RPAC2_XENLA | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1 | 33 | 110 | 2.0E-06 |
| sp|Q8U4N1|RPOL_PYRFU | DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL PE=3 SV=1 | 22 | 97 | 3.0E-06 |
| sp|P97304|RPAC2_MOUSE | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=1 SV=1 | 33 | 98 | 5.0E-06 |
| sp|Q54ES6|RPC19_DICDI | DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1 | 22 | 85 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | Yes |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0097747 | RNA polymerase activity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0034062 | 5'-3' RNA polymerase activity | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005515 | protein binding | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009987 | cellular process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016779 | nucleotidyltransferase activity | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3584 MNAPDRFELFLLNDGEKKIEEKVYSGMSNTSDFTLNKEDHTLGNLLSEHLKLHPNVWMAGYKVAHPNVPHLFIRI QTDGTKTPREVFCAVCEKLINQLESLHHEFTREWELRRITNVGEQGNMQPNGH* |
| Coding | >OphauB2|3584 ATGAACGCACCCGACAGGTTCGAACTTTTTCTGCTCAACGATGGCGAAAAGAAGATTGAAGAAAAGGTGTATTCG GGCATGTCCAATACCTCCGACTTTACTCTGAACAAAGAGGACCACACTCTAGGAAATCTGTTATCGGAGCATCTC AAGTTGCATCCCAATGTCTGGATGGCTGGCTACAAAGTTGCCCACCCCAATGTACCACACCTCTTTATACGGATA CAGACAGACGGCACCAAGACACCTCGCGAGGTCTTCTGCGCTGTATGCGAAAAGCTTATCAACCAGCTCGAGTCA CTGCACCACGAATTTACCCGCGAATGGGAGTTGCGTCGTATCACCAATGTCGGGGAACAAGGCAACATGCAGCCC AATGGCCATTGA |
| Transcript | >OphauB2|3584 ATGAACGCACCCGACAGGTTCGAACTTTTTCTGCTCAACGATGGCGAAAAGAAGATTGAAGAAAAGGTGTATTCG GGCATGTCCAATACCTCCGACTTTACTCTGAACAAAGAGGACCACACTCTAGGAAATCTGTTATCGGAGCATCTC AAGTTGCATCCCAATGTCTGGATGGCTGGCTACAAAGTTGCCCACCCCAATGTACCACACCTCTTTATACGGATA CAGACAGACGGCACCAAGACACCTCGCGAGGTCTTCTGCGCTGTATGCGAAAAGCTTATCAACCAGCTCGAGTCA CTGCACCACGAATTTACCCGCGAATGGGAGTTGCGTCGTATCACCAATGTCGGGGAACAAGGCAACATGCAGCCC AATGGCCATTGA |
| Gene | >OphauB2|3584 ATGAACGCACCCGACAGGTGAGTTTTGTCTGACCCTGCTCTTCTCATAAATGCTTTACGCGCTTTGTTCTTCTAC TTGGTCGTATCCACCATTTCTGCTTGACACAGCCATGCCCGGTCAAGTCTTGTCTAATTTGTTTTTGCCATGCGT CAAACGACTTGGACTGCAAGGGCATGTCTTCAGATGTGCCAAGCATGTTAAAATGGCCACTCCAATGATCGTGCA CAGGCAGGCTAGTGCCTGACCAGCTCTCTTACAAGTCATTCATCAACTTGCCTGCTTTGAAGCTGTTTGTATATT CGCCCCGCCTGCTTCTTTCTAATTACTTGTTTTGCGAGTTGCGCTGGCAGTGTCGGGTATGCAAATTCACTTTGC TGCTGGTCGCTGGGCTGTGAGTCAAGTGCAGCAGCCGCTGTGCCTTCTCTTCATGTAGCTCCAGCTCCTGCCCAC TACTTTCCCACACGCTTCACCTTTCTCTTGCCCACTTCTTCTTGACTCCACCACCTTGGTAGCTATCTGAAGCCG CATAGCCAAGACATCACCTCCATCGCCCTATTCACGACTTGACCACCATGGCTGGCTGCAATTCCAGGCACCATA ATCTTCAAGACACGTAGCGACCTGATTTTCTTATATCATGATGGATGCCTTGAATCCTTACAAATACACTGCTAA TGCCCGTCTCAGGTTCGAACTTTTTCTGCTCAACGATGGCGAAAAGAAGATTGAAGAAAAGGTGTATTCGGGTAA AGCGCCCCGGCCGTTGCTGATAACCACATCTCTCTAACACTTTGTACAGGCATGTCCAATACCTCCGACTTTACT CTGAACAAAGAGGACCACACTCTAGGAAATCTGTTATCGGAGCATCTCAAGTTGCATCCCAATGTCTGGATGGCT GGCTACAAAGGTGAAATGATCGGCGTACGCGTGGTTTTTTTGACATTTGCTGATGCTAGCGCTCAGTTGCCCACC CCAATGTACCACACCTCTTTATACGGATACAGACAGACGGCACCAAGACACCTCGCGAGGTCTTCTGCGCTGTAT GCGAAAAGCTTATCAACCAGCTCGAGTCACTGCACCACGAATTTACCCGCGAATGGGAGTTGCGTCGTATCACCA ATGTCGGGGAACAAGGCAACATGCAGCCCAATGGCCATTGA |