Protein ID | OphauB2|3509 |
Gene name | |
Location | Contig_221:16132..18050 |
Strand | + |
Gene length (bp) | 1918 |
Transcript length (bp) | 1803 |
Coding sequence length (bp) | 1803 |
Protein length (aa) | 601 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00098 | zf-CCHC | Zinc knuckle | 2.6E-06 | 16 | 32 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0046872 | metal ion binding | No |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0043167 | ion binding | No |
GO:0043169 | cation binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 32 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
Zinc finger, CCHC-type |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauB2|3509 MAEAPAGRSGRSQEAQCYNCGSLGHWAVACPEPTRETPAGLAAWRKSSNASQGSSKSHHAGSRRSKAPVITKYAP PVPAHQSHHLAPGMSHYQSPLPSGSGAQLAGLYLPPTAPYQQYGLPPPPQFAAGYHQGTTYAYQSHQYALSAPYG PPPYRQAGFGNGPAMSLGPPPPPPSLPPPPPPGAATGNSTASGSIQSGGSVGRDYRSYASAYPSHPPPPYASHEP PPYTRPTGSSPTSAATLPKPPSTRISHPLPPKPPPSHDQMKPQREHKHRRKQDRHSNHQDKRLRDYRSNSNSHLA TVQYSVDISASSWRSSSKDSSTREQTERGESEVKQRNRSPPAPHSPGKTRQAAGPGTAPEVSLKQVATDAVNATP SDSCDTKESEQEPARLRHDIARPSVEGPDTVATVILSEDGVEPLMAHDSTKHDSGLGDEKEDGEIASEDSVESPA QGEEGLAEAKPSSPDMNIVERRKRRHSYESDNDNKRAKRAQSKERALASERCSENESENENLWNTLGVPRQADRQ RRGSACSRGSRVSSVSNNTSDLDSLEAELLGRTAKKQKQQESTPPRRQRLERERKTPSKPKRRQTAANSAYSRRW * |
Coding | >OphauB2|3509 ATGGCAGAAGCACCCGCAGGCCGCTCGGGTAGGTCTCAGGAAGCTCAATGTTACAATTGCGGCTCCCTCGGTCAC TGGGCTGTTGCATGTCCTGAGCCGACTCGAGAGACTCCTGCTGGTCTGGCTGCGTGGCGCAAATCGTCCAATGCT AGCCAAGGTAGTTCCAAGAGCCATCATGCCGGCTCGAGGAGGTCCAAGGCGCCAGTCATTACCAAGTACGCGCCT CCGGTGCCCGCCCACCAGTCTCATCACTTGGCTCCTGGAATGAGTCACTATCAATCGCCGCTGCCCTCGGGGAGC GGTGCTCAGCTTGCTGGCCTCTACCTGCCGCCCACCGCGCCATACCAACAATATGGTCTTCCACCCCCTCCTCAA TTCGCCGCGGGTTACCATCAAGGCACAACGTATGCCTATCAGTCTCATCAGTACGCACTGTCGGCACCGTATGGA CCCCCTCCATATAGACAAGCCGGGTTTGGGAATGGCCCTGCAATGTCACTTGGGCCGCCGCCCCCACCACCAAGC CTACCTCCGCCCCCTCCTCCAGGAGCGGCCACAGGAAATTCAACGGCCTCGGGTTCCATTCAGAGCGGCGGATCA GTTGGACGTGATTACAGGTCATATGCTTCAGCCTATCCTTCTCATCCGCCTCCACCATATGCTTCTCATGAGCCG CCCCCTTATACTCGGCCAACAGGCTCTTCGCCAACATCTGCCGCTACGTTGCCAAAGCCGCCGAGTACCAGGATT AGCCATCCACTTCCGCCTAAGCCACCGCCGAGCCATGACCAGATGAAACCTCAGCGTGAGCACAAGCACAGACGG AAACAAGATCGTCATTCAAACCACCAGGATAAGCGCCTCAGAGACTATCGCTCAAACTCAAACTCTCACCTTGCC ACAGTTCAATACAGCGTCGATATATCTGCTTCTAGCTGGCGTAGCTCCTCCAAAGATTCGTCGACCCGCGAGCAG ACTGAAAGAGGCGAATCGGAAGTGAAACAACGCAATAGAAGTCCCCCCGCACCCCATTCGCCGGGGAAAACACGT CAAGCTGCTGGACCAGGTACTGCGCCTGAGGTGTCACTGAAGCAAGTGGCTACCGACGCGGTCAATGCTACCCCA TCGGATTCTTGTGATACTAAGGAGTCTGAACAGGAGCCGGCACGTCTTCGCCACGACATAGCTCGCCCATCTGTA GAGGGACCTGACACTGTTGCTACTGTTATCCTCTCTGAAGATGGCGTTGAACCGCTCATGGCTCACGACTCGACT AAGCATGACTCAGGGCTGGGTGATGAAAAGGAGGATGGAGAGATTGCGAGCGAGGATTCAGTAGAGAGTCCTGCA CAAGGGGAAGAAGGTTTGGCCGAAGCCAAACCGTCTTCCCCAGACATGAACATTGTGGAAAGACGGAAGCGACGG CACAGCTACGAGTCGGACAACGACAACAAGAGAGCAAAGCGGGCACAGTCCAAGGAGCGTGCGCTCGCTAGTGAG CGATGCAGCGAGAATGAAAGCGAGAATGAAAATCTTTGGAACACGCTTGGCGTGCCGAGACAGGCTGATCGCCAG CGTCGCGGCTCTGCTTGTTCTCGTGGATCGAGGGTCTCATCGGTGTCAAACAATACGTCAGATCTCGATTCTCTC GAGGCAGAACTCTTGGGTCGAACTGCCAAGAAGCAAAAGCAGCAAGAGTCGACTCCTCCCCGACGTCAGCGGCTC GAAAGGGAGCGCAAGACGCCTTCCAAGCCCAAGCGTCGACAGACAGCCGCCAACTCGGCTTATAGTCGCCGATGG TGA |
Transcript | >OphauB2|3509 ATGGCAGAAGCACCCGCAGGCCGCTCGGGTAGGTCTCAGGAAGCTCAATGTTACAATTGCGGCTCCCTCGGTCAC TGGGCTGTTGCATGTCCTGAGCCGACTCGAGAGACTCCTGCTGGTCTGGCTGCGTGGCGCAAATCGTCCAATGCT AGCCAAGGTAGTTCCAAGAGCCATCATGCCGGCTCGAGGAGGTCCAAGGCGCCAGTCATTACCAAGTACGCGCCT CCGGTGCCCGCCCACCAGTCTCATCACTTGGCTCCTGGAATGAGTCACTATCAATCGCCGCTGCCCTCGGGGAGC GGTGCTCAGCTTGCTGGCCTCTACCTGCCGCCCACCGCGCCATACCAACAATATGGTCTTCCACCCCCTCCTCAA TTCGCCGCGGGTTACCATCAAGGCACAACGTATGCCTATCAGTCTCATCAGTACGCACTGTCGGCACCGTATGGA CCCCCTCCATATAGACAAGCCGGGTTTGGGAATGGCCCTGCAATGTCACTTGGGCCGCCGCCCCCACCACCAAGC CTACCTCCGCCCCCTCCTCCAGGAGCGGCCACAGGAAATTCAACGGCCTCGGGTTCCATTCAGAGCGGCGGATCA GTTGGACGTGATTACAGGTCATATGCTTCAGCCTATCCTTCTCATCCGCCTCCACCATATGCTTCTCATGAGCCG CCCCCTTATACTCGGCCAACAGGCTCTTCGCCAACATCTGCCGCTACGTTGCCAAAGCCGCCGAGTACCAGGATT AGCCATCCACTTCCGCCTAAGCCACCGCCGAGCCATGACCAGATGAAACCTCAGCGTGAGCACAAGCACAGACGG AAACAAGATCGTCATTCAAACCACCAGGATAAGCGCCTCAGAGACTATCGCTCAAACTCAAACTCTCACCTTGCC ACAGTTCAATACAGCGTCGATATATCTGCTTCTAGCTGGCGTAGCTCCTCCAAAGATTCGTCGACCCGCGAGCAG ACTGAAAGAGGCGAATCGGAAGTGAAACAACGCAATAGAAGTCCCCCCGCACCCCATTCGCCGGGGAAAACACGT CAAGCTGCTGGACCAGGTACTGCGCCTGAGGTGTCACTGAAGCAAGTGGCTACCGACGCGGTCAATGCTACCCCA TCGGATTCTTGTGATACTAAGGAGTCTGAACAGGAGCCGGCACGTCTTCGCCACGACATAGCTCGCCCATCTGTA GAGGGACCTGACACTGTTGCTACTGTTATCCTCTCTGAAGATGGCGTTGAACCGCTCATGGCTCACGACTCGACT AAGCATGACTCAGGGCTGGGTGATGAAAAGGAGGATGGAGAGATTGCGAGCGAGGATTCAGTAGAGAGTCCTGCA CAAGGGGAAGAAGGTTTGGCCGAAGCCAAACCGTCTTCCCCAGACATGAACATTGTGGAAAGACGGAAGCGACGG CACAGCTACGAGTCGGACAACGACAACAAGAGAGCAAAGCGGGCACAGTCCAAGGAGCGTGCGCTCGCTAGTGAG CGATGCAGCGAGAATGAAAGCGAGAATGAAAATCTTTGGAACACGCTTGGCGTGCCGAGACAGGCTGATCGCCAG CGTCGCGGCTCTGCTTGTTCTCGTGGATCGAGGGTCTCATCGGTGTCAAACAATACGTCAGATCTCGATTCTCTC GAGGCAGAACTCTTGGGTCGAACTGCCAAGAAGCAAAAGCAGCAAGAGTCGACTCCTCCCCGACGTCAGCGGCTC GAAAGGGAGCGCAAGACGCCTTCCAAGCCCAAGCGTCGACAGACAGCCGCCAACTCGGCTTATAGTCGCCGATGG TGA |
Gene | >OphauB2|3509 ATGGCAGAAGCACCCGCAGGCCGCTCGGGTAGGTCTCAGGAAGCTCAATGTTACAATTGCGGCTCCCTCGGTCAC TGGGCTGTTGCATGTCCTGAGCCGACTCGAGAGACTCCTGCGTAAGCATTACTCTTTTCTGGTGGATTGCAGCAC ATGAACTGACATGACAAGACTACAGTGGTCTGGCTGCGTGGCGCAAATCGTCCAATGCTAGCCAAGGTAGTTCCA AGAGCCATCATGCCGGCTCGAGGAGGTCCAAGGCGCCAGTCATTACCAAGTACGCGCCTCCGGTGCCCGCCCACC AGTCTCATCACTTGGCTCCTGGAATGAGTCACTATCAATCGCCGCTGCCCTCGGGGAGCGGTGCTCAGCTTGCTG GCCTCTACCTGCCGCCCACCGCGCCATACCAACAATATGGTCTTCCACCCCCTCCTCAATTCGCCGCGGGTTACC ATCAAGGCACAACGTATGCCTATCAGTCTCATCAGTACGCACTGTCGGCACCGTATGGACCCCCTCCATATAGAC AAGCCGGGTTTGGGAATGGCCCTGCAATGTCACTTGGGCCGCCGCCCCCACCACCAAGCCTACCTCCGCCCCCTC CTCCAGGAGCGGCCACAGGAAATTCAACGGCCTCGGGTTCCATTCAGAGCGGCGGATCAGTTGGACGTGATTACA GGTCATATGCTTCAGCCTATCCTTCTCATCCGCCTCCACCATATGCTTCTCATGAGCCGCCCCCTTATACTCGGC CAACAGGCTCTTCGCCAACATCTGCCGCTACGTTGCCAAAGCCGCCGAGTACCAGGATTAGCCATCCACTTCCGC CTAAGCCACCGCCGAGCCATGACCAGATGAAACCTCAGCGTGAGCACAAGCACAGACGGAAACAAGATCGTCATT CAAACCACCAGGATAAGCGCCTCAGAGACTATCGCTCAAACTCAAACTCTCACCTTGCCACAGTTCAATACAGCG TCGATATATCTGCTTCTAGCTGGCGTAGCTCCTCCAAAGATTCGTCGACCCGCGAGCAGACTGAAAGAGGCGAAT CGGAAGTGAAACAACGCAATAGAAGTCCCCCCGCACCCCATTCGCCGGGGAAAACACGTCAAGCTGCTGGACCAG GTACTGCGCCTGAGGTGTCACTGAAGCAAGTGGCTACCGACGCGGTCAATGCTACCCCATCGGATTCTTGTGATA CTAAGGAGTCTGAACAGGAGCCGGCACGTCTTCGCCACGACATAGCTCGCCCATCTGTAGAGGGACCTGACACTG TTGCTACTGTTATCCTCTCTGAAGATGGCGTTGAACCGCTCATGGCTCACGACTCGACTAAGCATGACTCAGGGC TGGGTGATGAAAAGGAGGATGGAGAGATTGCGAGCGAGGATTCAGTAGAGAGTCCTGCACAAGGGGAAGAAGGTT TGGCCGAAGCCAAACCGTCTTCCCCAGACATGAACATTGTGGAAAGACGGAAGCGACGGCACAGCTACGAGTCGG ACAACGACAACAAGAGAGCAAAGCGGGCACAGTCCAAGGAGCGTGCGCTCGCTAGTGAGCGATGCAGCGAGAATG AAAGCGAGAATGAAAATCTTTGGAACACGCTTGGCGTGCCGAGACAGGCTGATCGCCAGCGTCGCGGCTCTGCTT GTTCTCGTGGATCGAGGGTCTCATCGGTGTCAAACAATACGTCAGATCTCGATTCTCTCGAGGCAGAACTCTTGG GTCGAACTGCCAAGAAGCAAAAGCAGCAAGAGTCGACTCCTCCCCGACGTCAGCGGCTCGAAAGGGAGCGCAAGA CGCCTTCCAAGCCCAAGCGTCGACAGACAGCCGCCAACTCGGCTTATAGGTCAGTCGTGATTGAGCTTTTTTTGC AATGAGAATACTATCTGACAATATACCAAGTCGCCGATGGTGA |