© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3508 |
| Gene name | |
| Location | Contig_221:14509..15191 |
| Strand | - |
| Gene length (bp) | 682 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00276 | Ribosomal_L23 | Ribosomal protein L23 | 3.3E-10 | 38 | 99 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09727|MRP20_SCHPO | 54S ribosomal protein L23, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrp20 PE=3 SV=1 | 15 | 115 | 2.0E-15 |
| sp|P32387|RM41_YEAST | 54S ribosomal protein L41, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRP20 PE=1 SV=1 | 12 | 122 | 1.0E-09 |
| sp|Q16540|RM23_HUMAN | 39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1 | 1 | 142 | 7.0E-08 |
| sp|Q6IQS9|RM23_DANRE | 39S ribosomal protein L23, mitochondrial OS=Danio rerio GN=mrpl23 PE=2 SV=1 | 10 | 108 | 4.0E-06 |
| sp|Q5TUE9|RM23_ANOGA | Probable 39S ribosomal protein L23, mitochondrial OS=Anopheles gambiae GN=mRpL23 PE=3 SV=1 | 10 | 139 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043226 | organelle | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043229 | intracellular organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3508 MARPVASQLPAFRLGRKQVFLPNHRVTLVRKDFLPPSEAFFQVPLRFTKFDLRDYLWNLYNVEVTKVRVFVKGMP LARKSPLTNAVYRPQSQKFMIVSLVRPFQWPEVPQDSTPWLKDLWQSRQDERSAQQDKVTDKRGGKVRLVSQQEP SEERQGLAKLAKKLLSGEIKWSNKRTLDPKWDKIVANTASPQESTVNKTETV* |
| Coding | >OphauB2|3508 ATGGCAAGACCTGTTGCGAGCCAGCTGCCCGCTTTTAGGCTCGGGAGAAAGCAGGTATTTTTACCTAACCACAGG GTCACCCTCGTCCGCAAAGACTTTCTACCTCCCAGCGAAGCTTTCTTTCAAGTTCCCCTACGCTTCACCAAGTTT GATCTTCGCGACTATCTGTGGAATCTTTACAATGTCGAGGTCACAAAGGTTCGCGTTTTTGTCAAGGGCATGCCG CTTGCTCGTAAATCGCCATTGACCAATGCCGTATATCGACCGCAATCTCAAAAGTTCATGATAGTCTCGCTTGTC AGGCCTTTCCAATGGCCCGAAGTGCCTCAGGACTCGACGCCCTGGCTCAAGGACTTGTGGCAGAGTCGTCAGGAC GAGAGAAGTGCGCAACAGGACAAAGTTACTGACAAACGCGGTGGCAAGGTTAGGCTCGTGAGCCAGCAGGAGCCA TCCGAGGAGCGACAAGGGCTCGCCAAGCTAGCCAAGAAATTGTTATCAGGAGAAATCAAGTGGTCTAACAAAAGG ACGCTGGATCCCAAATGGGACAAGATCGTCGCAAATACTGCTTCACCACAAGAAAGCACTGTCAATAAGACGGAG ACGGTGTAG |
| Transcript | >OphauB2|3508 ATGGCAAGACCTGTTGCGAGCCAGCTGCCCGCTTTTAGGCTCGGGAGAAAGCAGGTATTTTTACCTAACCACAGG GTCACCCTCGTCCGCAAAGACTTTCTACCTCCCAGCGAAGCTTTCTTTCAAGTTCCCCTACGCTTCACCAAGTTT GATCTTCGCGACTATCTGTGGAATCTTTACAATGTCGAGGTCACAAAGGTTCGCGTTTTTGTCAAGGGCATGCCG CTTGCTCGTAAATCGCCATTGACCAATGCCGTATATCGACCGCAATCTCAAAAGTTCATGATAGTCTCGCTTGTC AGGCCTTTCCAATGGCCCGAAGTGCCTCAGGACTCGACGCCCTGGCTCAAGGACTTGTGGCAGAGTCGTCAGGAC GAGAGAAGTGCGCAACAGGACAAAGTTACTGACAAACGCGGTGGCAAGGTTAGGCTCGTGAGCCAGCAGGAGCCA TCCGAGGAGCGACAAGGGCTCGCCAAGCTAGCCAAGAAATTGTTATCAGGAGAAATCAAGTGGTCTAACAAAAGG ACGCTGGATCCCAAATGGGACAAGATCGTCGCAAATACTGCTTCACCACAAGAAAGCACTGTCAATAAGACGGAG ACGGTGTAG |
| Gene | >OphauB2|3508 ATGGCAAGACCTGTTGCGAGCCAGCTGCCCGCTTTTAGGCTCGGGAGAAAGCAGGTATTTTTGTGAGTCTCTGCA CCGTGGGCTGGCGCAATCTGGCATTTTTTTCATGAGCTAACGCACATGGGCTACTCATAGACCTAACCACAGGGT CACCCTCGTCCGCAAAGACTTTCTACCTCCCAGCGAAGCTTTCTTTCAAGTTCCCCTACGCTTCACCAAGTTTGA TCTTCGCGACTATCTGTGGAATCTTTACAATGTCGAGGTCACAAAGGTTCGCGTTTTTGTCAAGGGCATGCCGCT TGCTCGTAAATCGCCATTGACCAATGCCGTATATCGACCGCAATCTCAAAAGTTCATGATAGTCTCGCTTGTCAG GCCTTTCCAATGGCCCGAAGTGCCTCAGGACTCGACGCCCTGGCTCAAGGACTTGTGGCAGAGTCGTCAGGACGA GAGAAGTGCGCAACAGGACAAAGTTACTGACAAACGCGGTGGCAAGGTTAGGCTCGTGAGCCAGCAGGAGCCATC CGAGGAGCGACAAGGGCTCGCCAAGCTAGCCAAGAAATTGTTATCAGGAGAAATCAAGTGGTCTAACAAAAGGAC GCTGGATCCCAAATGGGACAAGATCGTCGCAAATACTGCTTCACCACAAGAAAGCACTGTCAATAAGACGGAGAC GGTGTAG |