© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3500 |
| Gene name | |
| Location | Contig_220:15907..18164 |
| Strand | + |
| Gene length (bp) | 2257 |
| Transcript length (bp) | 2124 |
| Coding sequence length (bp) | 2124 |
| Protein length (aa) | 708 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05383 | La | La domain | 2.4E-18 | 508 | 562 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6K0|YLA3_SCHPO | Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1 | 443 | 591 | 1.0E-21 |
| sp|Q94K80|LRP1C_ARATH | La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1 | 483 | 590 | 5.0E-17 |
| sp|Q8RWR2|LRP1B_ARATH | La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2 | 374 | 591 | 4.0E-15 |
| sp|Q6ZQ58|LARP1_MOUSE | La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3 | 499 | 591 | 7.0E-15 |
| sp|Q6PKG0|LARP1_HUMAN | La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 | 502 | 593 | 4.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6K0|YLA3_SCHPO | Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1 | 443 | 591 | 1.0E-21 |
| sp|Q94K80|LRP1C_ARATH | La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1 | 483 | 590 | 5.0E-17 |
| sp|Q8RWR2|LRP1B_ARATH | La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2 | 374 | 591 | 4.0E-15 |
| sp|Q6ZQ58|LARP1_MOUSE | La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3 | 499 | 591 | 7.0E-15 |
| sp|Q6PKG0|LARP1_HUMAN | La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 | 502 | 593 | 4.0E-14 |
| sp|D5MCN2|LARP1_CAEEL | La-related protein 1 OS=Caenorhabditis elegans GN=larp-1 PE=3 SV=2 | 484 | 569 | 8.0E-14 |
| sp|Q659C4|LAR1B_HUMAN | La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2 | 494 | 570 | 1.0E-13 |
| sp|Q9VAW5|LARP_DROME | La-related protein 1 OS=Drosophila melanogaster GN=larp PE=1 SV=5 | 495 | 572 | 5.0E-12 |
| sp|Q9I7T7|Y1505_DROME | La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505 PE=1 SV=2 | 505 | 580 | 2.0E-11 |
| sp|Q940X9|LRP1A_ARATH | La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1 | 465 | 589 | 6.0E-09 |
| sp|Q71RC2|LARP4_HUMAN | La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3 | 505 | 580 | 6.0E-08 |
| sp|Q8BWW4|LARP4_MOUSE | La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2 | 505 | 580 | 6.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3500 MPIEKHDNESSVGSEIYIPSDTASEKRPGSKRDGDTGRLDRPWRRAEKDTRSSSATTRSADDHDAAGSHNDTRSK APEKHCSDQDSSVGKNDCVHEAPKVELLEAPIPPVNIWQQRREAMAKLKPTTTTGDGGVNGASASFVDARKPAKP SKDLSLPMGETASTNGSKQPRKASETAHTERNGSRLGRTTDKETRDSKADLPPAVDDAASWPTPETAVKEKRKPS ISNVDRVEKDVKDTSEEPLQHKSRQKEKWITYDYVPSVSFETQLPQMRGLKPRGGARAANGTSRATGTTQVNEKA ASTAPMAKATEYRDRPREGGPAPNRTASVPPAVKRASMDVSSFRDQRRASGHASGHAASDRSKDATTSYSPEQNH GSRDRPEGRVDRGRGGGYRRGNHHSQNMHAQHQHGASGYSAGSMASRPQQGTYSPPLRQGGHNQMFMAPSQRGGR GRNGAGANFHRMSLPNGSLRLPAVQTQFGPYEYPVAPLSAMPFQPQPYMDSMVLQMLKGQIEYYFSIENLCKDMF LRKRMDSQGFVNLQFVAAFKRIRELTSDMGMIRAVCESSPDLEFVVGEDEVERIRRRSGWQNFVLPMLERDSLAR NNGPVHLTFKSRAVGYNSASPYNGMAPGSYGMSSPLGYNGDTHFQPMTDAHTTGGMANGAGGISQLSAEVPDFSP SGLSNLGGIRSHGGDGNIDKNAGASAGNATGN* |
| Coding | >OphauB2|3500 ATGCCTATCGAAAAGCATGATAATGAGTCGAGCGTTGGGTCCGAAATTTATATACCATCTGACACAGCTTCTGAA AAGCGGCCTGGATCAAAGCGAGACGGCGATACAGGACGTTTAGATCGGCCTTGGCGACGAGCCGAAAAGGATACT AGATCTTCAAGTGCGACCACCCGCTCAGCTGATGATCACGACGCCGCAGGATCGCACAACGATACAAGGTCCAAG GCTCCAGAGAAGCATTGCAGCGACCAGGACTCGAGTGTTGGGAAGAATGATTGTGTTCATGAAGCGCCAAAGGTA GAACTCCTGGAGGCGCCGATTCCCCCTGTCAATATTTGGCAGCAGCGACGAGAAGCTATGGCCAAACTAAAGCCG ACCACAACTACTGGCGACGGTGGAGTTAATGGTGCTTCAGCATCATTTGTAGATGCAAGGAAGCCTGCCAAGCCC AGCAAGGACTTGTCCCTGCCGATGGGTGAGACTGCCTCTACCAACGGTTCAAAGCAACCACGCAAGGCTAGCGAG ACTGCTCATACAGAGCGCAATGGCAGTCGACTTGGTAGAACAACTGATAAAGAGACAAGAGATAGCAAGGCTGAT TTACCGCCCGCTGTTGACGATGCTGCATCCTGGCCCACTCCGGAGACGGCAGTTAAAGAGAAAAGGAAGCCATCT ATTTCCAATGTCGATCGTGTGGAGAAAGATGTAAAGGACACTTCAGAAGAGCCGTTACAACACAAATCGCGCCAA AAGGAGAAGTGGATTACATACGATTACGTGCCTTCAGTCAGTTTCGAGACTCAACTCCCGCAGATGCGTGGTTTG AAGCCTCGCGGAGGTGCACGTGCAGCAAATGGAACTTCGCGGGCGACAGGCACTACTCAGGTCAACGAAAAAGCT GCTTCAACTGCACCCATGGCTAAGGCCACCGAATATCGCGATCGGCCGCGCGAGGGAGGACCTGCGCCAAACAGG ACAGCGTCGGTGCCTCCAGCAGTAAAGCGTGCCTCTATGGATGTTTCGAGTTTCAGAGACCAAAGGAGGGCGTCG GGTCATGCATCAGGTCACGCAGCAAGCGACAGATCCAAGGATGCAACAACTTCTTATTCACCTGAGCAGAATCAT GGATCTAGAGATCGTCCAGAGGGCCGGGTTGATAGGGGACGAGGAGGTGGATATCGCCGCGGAAACCACCATTCC CAGAACATGCATGCTCAACACCAGCACGGCGCCAGTGGTTACAGTGCTGGATCGATGGCATCTCGGCCCCAGCAA GGGACTTACAGCCCGCCGCTTAGGCAGGGCGGACACAACCAAATGTTTATGGCACCGTCCCAAAGAGGTGGACGA GGGCGCAACGGCGCTGGCGCCAACTTTCACCGCATGTCTTTGCCAAACGGATCATTACGTCTTCCGGCTGTGCAG ACGCAGTTTGGCCCGTACGAATACCCTGTGGCACCGCTGTCTGCGATGCCATTTCAGCCTCAGCCCTATATGGAC AGCATGGTATTGCAGATGCTCAAGGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGACATGTTT CTTCGCAAGAGGATGGACTCGCAGGGCTTCGTCAACTTGCAATTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTA ACGTCGGACATGGGCATGATACGGGCCGTATGCGAGTCGTCGCCCGATCTTGAATTCGTGGTGGGCGAGGATGAG GTGGAGCGCATACGCAGAAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCTCGAGCGAGACAGCTTGGCTCGC AACAATGGTCCTGTGCACTTGACGTTTAAAAGCCGTGCAGTGGGATACAACTCGGCATCGCCTTACAACGGCATG GCACCAGGCTCGTATGGCATGTCGTCTCCCCTGGGCTACAACGGCGACACTCATTTTCAGCCCATGACGGACGCC CACACGACGGGCGGCATGGCGAATGGTGCTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCTGATTTTTCGCCT TCCGGATTGAGCAATCTTGGTGGCATTCGCAGTCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAGT GCTGGAAATGCTACTGGAAATTAA |
| Transcript | >OphauB2|3500 ATGCCTATCGAAAAGCATGATAATGAGTCGAGCGTTGGGTCCGAAATTTATATACCATCTGACACAGCTTCTGAA AAGCGGCCTGGATCAAAGCGAGACGGCGATACAGGACGTTTAGATCGGCCTTGGCGACGAGCCGAAAAGGATACT AGATCTTCAAGTGCGACCACCCGCTCAGCTGATGATCACGACGCCGCAGGATCGCACAACGATACAAGGTCCAAG GCTCCAGAGAAGCATTGCAGCGACCAGGACTCGAGTGTTGGGAAGAATGATTGTGTTCATGAAGCGCCAAAGGTA GAACTCCTGGAGGCGCCGATTCCCCCTGTCAATATTTGGCAGCAGCGACGAGAAGCTATGGCCAAACTAAAGCCG ACCACAACTACTGGCGACGGTGGAGTTAATGGTGCTTCAGCATCATTTGTAGATGCAAGGAAGCCTGCCAAGCCC AGCAAGGACTTGTCCCTGCCGATGGGTGAGACTGCCTCTACCAACGGTTCAAAGCAACCACGCAAGGCTAGCGAG ACTGCTCATACAGAGCGCAATGGCAGTCGACTTGGTAGAACAACTGATAAAGAGACAAGAGATAGCAAGGCTGAT TTACCGCCCGCTGTTGACGATGCTGCATCCTGGCCCACTCCGGAGACGGCAGTTAAAGAGAAAAGGAAGCCATCT ATTTCCAATGTCGATCGTGTGGAGAAAGATGTAAAGGACACTTCAGAAGAGCCGTTACAACACAAATCGCGCCAA AAGGAGAAGTGGATTACATACGATTACGTGCCTTCAGTCAGTTTCGAGACTCAACTCCCGCAGATGCGTGGTTTG AAGCCTCGCGGAGGTGCACGTGCAGCAAATGGAACTTCGCGGGCGACAGGCACTACTCAGGTCAACGAAAAAGCT GCTTCAACTGCACCCATGGCTAAGGCCACCGAATATCGCGATCGGCCGCGCGAGGGAGGACCTGCGCCAAACAGG ACAGCGTCGGTGCCTCCAGCAGTAAAGCGTGCCTCTATGGATGTTTCGAGTTTCAGAGACCAAAGGAGGGCGTCG GGTCATGCATCAGGTCACGCAGCAAGCGACAGATCCAAGGATGCAACAACTTCTTATTCACCTGAGCAGAATCAT GGATCTAGAGATCGTCCAGAGGGCCGGGTTGATAGGGGACGAGGAGGTGGATATCGCCGCGGAAACCACCATTCC CAGAACATGCATGCTCAACACCAGCACGGCGCCAGTGGTTACAGTGCTGGATCGATGGCATCTCGGCCCCAGCAA GGGACTTACAGCCCGCCGCTTAGGCAGGGCGGACACAACCAAATGTTTATGGCACCGTCCCAAAGAGGTGGACGA GGGCGCAACGGCGCTGGCGCCAACTTTCACCGCATGTCTTTGCCAAACGGATCATTACGTCTTCCGGCTGTGCAG ACGCAGTTTGGCCCGTACGAATACCCTGTGGCACCGCTGTCTGCGATGCCATTTCAGCCTCAGCCCTATATGGAC AGCATGGTATTGCAGATGCTCAAGGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGACATGTTT CTTCGCAAGAGGATGGACTCGCAGGGCTTCGTCAACTTGCAATTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTA ACGTCGGACATGGGCATGATACGGGCCGTATGCGAGTCGTCGCCCGATCTTGAATTCGTGGTGGGCGAGGATGAG GTGGAGCGCATACGCAGAAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCTCGAGCGAGACAGCTTGGCTCGC AACAATGGTCCTGTGCACTTGACGTTTAAAAGCCGTGCAGTGGGATACAACTCGGCATCGCCTTACAACGGCATG GCACCAGGCTCGTATGGCATGTCGTCTCCCCTGGGCTACAACGGCGACACTCATTTTCAGCCCATGACGGACGCC CACACGACGGGCGGCATGGCGAATGGTGCTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCTGATTTTTCGCCT TCCGGATTGAGCAATCTTGGTGGCATTCGCAGTCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAGT GCTGGAAATGCTACTGGAAATTAA |
| Gene | >OphauB2|3500 ATGCCTATCGAAAAGCATGATAATGAGTCGAGCGTTGGGTCCGAAATTTATATACCATCTGACACAGCTTCTGAA AAGCGGCCTGGATCAAAGCGAGACGGCGATACAGGACGTTTAGATCGGCCTTGGCGACGAGCCGAAAAGGATACT AGATCTTCAAGTGCGACCACCCGCTCAGCTGATGATCACGACGCCGCAGGATCGCACAACGATACAAGGTCCAAG GCTCCAGAGAAGCATTGCAGCGACCAGGACTCGAGTGTTGGGAAGAATGATTGTGTTCATGAAGCGCCAAAGGTA GAACTCCTGGAGGCGCCGATTCCCCCTGTCAATATTTGGCAGCAGCGACGAGAAGCTATGGCCAAACTAAAGCCG ACCACAACTACTGGCGACGGTGGAGTTAATGGTGCTTCAGCATCATTTGTAGATGCAAGGAAGCCTGCCAAGCCC AGCAAGGACTTGTCCCTGCCGATGGGTGAGACTGCCTCTACCAACGGTTCAAAGCAACCACGCAAGGCTAGCGAG ACTGCTCATACAGAGCGCAATGGCAGTCGACTTGGTAGAACAACTGATAAAGAGACAAGAGATAGCAAGGCTGAT TTACCGCCCGCTGTTGACGATGCTGCATCCTGGCCCACTCCGGAGACGGCAGTTAAAGAGAAAAGGAAGCCATCT ATTTCCAATGTCGATCGTGTGGAGAAAGATGTAAAGGACACTTCAGAAGAGCCGTTACAACACAAATCGCGCCAA AAGGAGAAGTGGATTACATACGATTACGTGCCTTCAGTCAGTTTCGAGACTCAACTCCCGCAGATGCGTGGTTTG AAGCCTCGCGGAGGTGCACGTGCAGCAAATGGAACTTCGCGGGCGACAGGCACTACTCAGGTCAACGAAAAAGCT GCTTCAACTGCACCCATGGCTAAGGCCACCGAATATCGCGATCGGCCGCGCGAGGGAGGACCTGCGCCAAACAGG ACAGCGTCGGTGCCTCCAGCAGTAAAGCGTGCCTCTATGGATGTTTCGAGTTTCAGAGACCAAAGGAGGGCGTCG GGTCATGCATCAGGTCACGCAGCAAGCGACAGATCCAAGGATGCAACAACTTCTTATTCACCTGTACGTACCTCG TGTTGGTTCCTGGCAGCTGTTGCTTTATTGAATGCATGGCGGCTCTTTTCGCTGTGGGACCAGCCATGGCGTATA TTCCACGACTATTGACTTGGTGATGAGTACTAAATTTTCTATACAGGAGCAGAATCATGGATCTAGAGATCGTCC AGAGGGCCGGGTTGATAGGGGACGAGGAGGTGGATATCGCCGCGGAAACCACCATTCCCAGAACATGCATGCTCA ACACCAGCACGGCGCCAGTGGTTACAGTGCTGGATCGATGGCATCTCGGCCCCAGCAAGGGACTTACAGCCCGCC GCTTAGGCAGGGCGGACACAACCAAATGTTTATGGCACCGTCCCAAAGAGGTGGACGAGGGCGCAACGGCGCTGG CGCCAACTTTCACCGCATGTCTTTGCCAAACGGATCATTACGTCTTCCGGCTGTGCAGACGCAGTTTGGCCCGTA CGAATACCCTGTGGCACCGCTGTCTGCGATGCCATTTCAGCCTCAGCCCTATATGGACAGCATGGTATTGCAGAT GCTCAAGGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGACATGTTTCTTCGCAAGAGGATGGA CTCGCAGGGCTTCGTCAACTTGCAATTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTAACGTCGGACATGGGCAT GATACGGGCCGTATGCGAGTCGTCGCCCGATCTTGAATTCGTGGTGGGCGAGGATGAGGTGGAGCGCATACGCAG AAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCTCGAGCGAGACAGCTTGGCTCGCAACAATGGTCCTGTGCA CTTGACGTTTAAAAGCCGTGCAGTGGGATACAACTCGGCATCGCCTTACAACGGCATGGCACCAGGCTCGTATGG CATGTCGTCTCCCCTGGGCTACAACGGCGACACTCATTTTCAGCCCATGACGGACGCCCACACGACGGGCGGCAT GGCGAATGGTGCTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCTGATTTTTCGCCTTCCGGATTGAGCAATCT TGGTGGCATTCGCAGTCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAGTGCTGGAAATGCTACTGG AAATTAA |