© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3471 |
| Gene name | |
| Location | Contig_22:140324..141714 |
| Strand | + |
| Gene length (bp) | 1390 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04427 | Brix | Brix domain | 2.8E-46 | 42 | 343 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14206|YDD3_SCHPO | Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2 | 1 | 391 | 4.0E-93 |
| sp|P38789|SSF1_YEAST | Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1 | 1 | 413 | 8.0E-82 |
| sp|Q12153|SSF2_YEAST | Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1 | 1 | 407 | 4.0E-81 |
| sp|Q5REM3|SSF1_PONAB | Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1 | 2 | 411 | 2.0E-57 |
| sp|Q9NQ55|SSF1_HUMAN | Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=2 SV=1 | 2 | 402 | 2.0E-57 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14206|YDD3_SCHPO | Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2 | 1 | 391 | 4.0E-93 |
| sp|P38789|SSF1_YEAST | Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1 | 1 | 413 | 8.0E-82 |
| sp|Q12153|SSF2_YEAST | Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1 | 1 | 407 | 4.0E-81 |
| sp|Q5REM3|SSF1_PONAB | Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1 | 2 | 411 | 2.0E-57 |
| sp|Q9NQ55|SSF1_HUMAN | Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=2 SV=1 | 2 | 402 | 2.0E-57 |
| sp|Q91YU8|SSF1_MOUSE | Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=1 SV=2 | 2 | 399 | 9.0E-54 |
| sp|Q54N44|PPAN_DICDI | Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1 | 31 | 414 | 1.0E-48 |
| sp|Q9ASU7|PPAN_ARATH | Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1 | 30 | 358 | 3.0E-48 |
| sp|Q9VDE5|PPAN_DROME | Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1 | 7 | 415 | 6.0E-41 |
| sp|Q6FNN7|IMP4_CANGA | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1 | 12 | 220 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019843 | rRNA binding | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3471 MARRRTKKRTHAGANNAQPASAGHASIRDPKSMVIRIGAGEVGSSISQLATDVRRVMEPGTASRLKERRGNKLKD YAVMCGPLGVTHLLLFSRSQGGNTNLRVAATPRGPTMHFRVDKYALCKDVQRTQRHPRGGGKEFLTPPLLVMDGF TTPHATAKSKVPKHLESLATTVFRSLFPPINPQTTPIKSIRRVLILKREQSCPDDGTFILNFRHYAITTKPADAS RPLRRLNAAEKLMTTKTSRHSKMPNLGKLQDIADYMIGGDNGDGYMTDMTSGSEPDTDAEVEVLGTSHKKISSAK ARQAAAQDDDEDAAAQDGEEENVERLRVKLVELGPRMRLRLTKVEEGLCEGKIMWHEYVHKTQQQVKELDKRWEK KRQEKEARRREQKANVERKKAAKEQVRGDGGDDDGDDDDYSDMDVDDLDSEGLAGDGEFLVNEEVENKGE* |
| Coding | >OphauB2|3471 ATGGCACGCAGACGGACAAAAAAGCGCACCCACGCCGGGGCCAACAACGCTCAGCCCGCCTCTGCCGGCCATGCA TCCATACGCGACCCCAAGTCCATGGTGATTCGCATTGGCGCAGGCGAAGTCGGCTCCAGCATCAGCCAACTAGCC ACCGACGTGCGCCGCGTCATGGAGCCCGGCACGGCAAGCCGGCTCAAGGAGCGCCGGGGCAACAAACTCAAGGAC TATGCCGTCATGTGCGGCCCGCTTGGAGTGACGCATCTGCTGCTCTTTTCGCGCTCACAAGGCGGAAATACAAAT CTGCGAGTGGCGGCGACGCCTCGCGGGCCGACGATGCATTTCCGCGTCGACAAGTATGCGCTGTGCAAAGACGTC CAGCGGACGCAGCGGCATCCTCGCGGTGGAGGAAAGGAGTTTTTGACGCCGCCTTTGCTCGTCATGGACGGCTTC ACCACGCCCCATGCTACTGCCAAGTCAAAGGTGCCCAAGCATCTAGAGTCGCTGGCCACCACGGTCTTTCGCTCC TTGTTTCCGCCTATTAATCCGCAGACGACACCCATCAAGTCAATACGCAGAGTGCTTATTCTCAAGCGCGAGCAG TCTTGCCCCGACGACGGCACCTTTATCCTTAATTTCAGACACTATGCAATCACCACCAAGCCTGCAGACGCGTCA CGCCCGCTCCGCCGCCTCAATGCCGCTGAGAAGCTCATGACGACCAAGACGAGTCGCCACAGCAAAATGCCCAAT CTCGGCAAGTTGCAGGACATTGCAGATTACATGATTGGCGGCGACAATGGCGACGGCTACATGACAGACATGACG AGCGGCAGTGAGCCCGACACGGACGCCGAGGTGGAAGTCTTGGGCACGTCGCACAAGAAGATTTCATCGGCCAAG GCTCGCCAAGCCGCAGCACAAGACGACGACGAAGACGCCGCCGCCCAAGACGGCGAGGAGGAAAACGTGGAGCGC CTGCGCGTCAAACTGGTTGAGCTGGGTCCGCGCATGCGACTACGCCTAACAAAGGTGGAGGAAGGCCTGTGTGAG GGCAAAATTATGTGGCATGAATACGTGCACAAGACGCAGCAGCAGGTCAAGGAGCTGGACAAGCGGTGGGAAAAG AAGAGACAGGAAAAGGAAGCGCGGCGCAGAGAGCAAAAGGCCAATGTGGAGAGGAAAAAGGCGGCCAAGGAGCAG GTGCGAGGAGATGGTGGTGACGACGACGGCGACGATGACGATTATAGCGATATGGATGTGGACGACTTGGACAGC GAGGGGCTGGCGGGCGATGGCGAGTTTTTGGTGAATGAAGAGGTGGAGAACAAGGGGGAGTGA |
| Transcript | >OphauB2|3471 ATGGCACGCAGACGGACAAAAAAGCGCACCCACGCCGGGGCCAACAACGCTCAGCCCGCCTCTGCCGGCCATGCA TCCATACGCGACCCCAAGTCCATGGTGATTCGCATTGGCGCAGGCGAAGTCGGCTCCAGCATCAGCCAACTAGCC ACCGACGTGCGCCGCGTCATGGAGCCCGGCACGGCAAGCCGGCTCAAGGAGCGCCGGGGCAACAAACTCAAGGAC TATGCCGTCATGTGCGGCCCGCTTGGAGTGACGCATCTGCTGCTCTTTTCGCGCTCACAAGGCGGAAATACAAAT CTGCGAGTGGCGGCGACGCCTCGCGGGCCGACGATGCATTTCCGCGTCGACAAGTATGCGCTGTGCAAAGACGTC CAGCGGACGCAGCGGCATCCTCGCGGTGGAGGAAAGGAGTTTTTGACGCCGCCTTTGCTCGTCATGGACGGCTTC ACCACGCCCCATGCTACTGCCAAGTCAAAGGTGCCCAAGCATCTAGAGTCGCTGGCCACCACGGTCTTTCGCTCC TTGTTTCCGCCTATTAATCCGCAGACGACACCCATCAAGTCAATACGCAGAGTGCTTATTCTCAAGCGCGAGCAG TCTTGCCCCGACGACGGCACCTTTATCCTTAATTTCAGACACTATGCAATCACCACCAAGCCTGCAGACGCGTCA CGCCCGCTCCGCCGCCTCAATGCCGCTGAGAAGCTCATGACGACCAAGACGAGTCGCCACAGCAAAATGCCCAAT CTCGGCAAGTTGCAGGACATTGCAGATTACATGATTGGCGGCGACAATGGCGACGGCTACATGACAGACATGACG AGCGGCAGTGAGCCCGACACGGACGCCGAGGTGGAAGTCTTGGGCACGTCGCACAAGAAGATTTCATCGGCCAAG GCTCGCCAAGCCGCAGCACAAGACGACGACGAAGACGCCGCCGCCCAAGACGGCGAGGAGGAAAACGTGGAGCGC CTGCGCGTCAAACTGGTTGAGCTGGGTCCGCGCATGCGACTACGCCTAACAAAGGTGGAGGAAGGCCTGTGTGAG GGCAAAATTATGTGGCATGAATACGTGCACAAGACGCAGCAGCAGGTCAAGGAGCTGGACAAGCGGTGGGAAAAG AAGAGACAGGAAAAGGAAGCGCGGCGCAGAGAGCAAAAGGCCAATGTGGAGAGGAAAAAGGCGGCCAAGGAGCAG GTGCGAGGAGATGGTGGTGACGACGACGGCGACGATGACGATTATAGCGATATGGATGTGGACGACTTGGACAGC GAGGGGCTGGCGGGCGATGGCGAGTTTTTGGTGAATGAAGAGGTGGAGAACAAGGGGGAGTGA |
| Gene | >OphauB2|3471 ATGGCACGCAGACGGACAAAAAAGCGCACCCACGCCGGGGCCAACAACGCTCAGCCCGCCTCTGCCGGCCATGCA TCCATACGCGACCCCAAGTCCATGGTGATTCGCATTGGCGCAGGCGAAGTCGGCTCCAGCATCAGCCAACTAGCC ACCGACGTGCGCCGCGTCATGGAGCCCGGCACGGCAAGCCGGCTCAAGGAGCGCCGGGGCAACAAACTCAAGGAC TATGCCGTCATGTGCGGCCCGCTTGGAGTGACGCATCTGCTGCTCTTTTCGCGCTCACAAGGCGGAAATACAAAT CTGCGAGTGGCGGCGACGCCTCGCGGGCCGACGATGCATTTCCGCGTCGACAAGTATGCGCTGTGCAAAGACGTC CAGCGGACGCAGCGGCATCCTCGCGGTGGAGGAAAGGAGTTTTTGACGCCGCCTTTGGTAGGGCTTGCAAAGTTG CTCTTGATGCTTGGCTCTGCTGACGCCGACCCAGCTCGTCATGGACGGCTTCACCACGCCCCATGCTACTGCCAA GTCAAAGGTGCCCAAGCATCTAGAGTCGCTGGCCACCACGGTCTTTCGCTCCTTGTTTCCGCCTATTAATCCGCA GACGACACCCATCAAGTCAATACGCAGAGTGCTTATTCTCAAGCGCGAGCAGTCTTGCCCCGACGACGGCACCTT TATCCTTAATTTCAGACACTATGCAATCACCACCAAGCCTGCAGACGCGTCACGCCCGCTCCGCCGCCTCAATGC CGCTGAGAAGCTCATGACGACCAAGACGAGTCGCCACAGCAAAATGCCCAATCTCGGCAAGTTGCAGGACATTGC AGATTACATGATTGGCGGCGACAATGGCGACGGCTACATGACAGACATGACGAGCGGCAGTGAGCCCGACACGGA CGCCGAGGTGGAAGTCTTGGGCACGTCGCACAAGAAGATTTCATCGGCCAAGGCTCGCCAAGCCGCAGCACAAGA CGACGACGAAGACGCCGCCGCCCAAGACGGCGAGGAGGAAAACGTGGAGCGCCTGCGCGTCAAACTGGTTGAGCT GGGTCCGCGCATGCGACTACGCCTAACAAAGGTGGAGGAAGGCCTGTGTGAGGGCAAAATTATGTGGCATGAATA CGTGCACAAGACGCAGCAGCAGGTCAAGGAGCTGGACAAGCGGTGGGAAAAGAAGAGACAGGAAAAGGAAGCGCG GCGCAGAGAGCAAAAGGCCAATGTGGAGAGGAAAAAGGCGGCCAAGGAGCAGGTGCGAGGAGATGGTGGTGACGA CGACGGCGACGATGACGATTATAGCGATATGGATGTGGACGACTTGGACAGCGAGGGGCTGGCGGGCGATGGCGA GTTTTTGGTGAATGAAGAGGTGGAGAACAAGGGGGAGTGA |