© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3452 |
| Gene name | |
| Location | Contig_22:89641..90556 |
| Strand | + |
| Gene length (bp) | 915 |
| Transcript length (bp) | 864 |
| Coding sequence length (bp) | 864 |
| Protein length (aa) | 288 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05997 | Nop52 | Nucleolar protein,Nop52 | 4.9E-42 | 12 | 212 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P35178|RRP1_YEAST | Ribosomal RNA-processing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP1 PE=1 SV=2 | 11 | 205 | 6.0E-21 |
| sp|Q9Y7M6|RRP1_SCHPO | Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC9B6.07 PE=3 SV=1 | 11 | 205 | 2.0E-17 |
| sp|P56183|RRP1_MOUSE | Ribosomal RNA processing protein 1 homolog A OS=Mus musculus GN=Rrp1 PE=1 SV=2 | 15 | 207 | 3.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006364 | rRNA processing | Yes |
| GO:0030688 | preribosome, small subunit precursor | Yes |
| GO:0030684 | preribosome | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3452 MAVHDVEASQTPFIKNLASSDRRLRTQSLAALHAYLSSRTRLTDLDATRLWTGLFWALWMTDRVRPQAKLADELA DLVFAFTRPEHPSQIPQDAAPTSPDKSAPQAQLQTSSPLDASSLQDLSTTWLRAGWSVLSTNWSRIDALRLDKFL LLARRLLAAHLRLASHPPLLHVLRTHVLDVADETGVALGLRLHVLDIWVDELERIGALKPAAPDMAEGADQQDAR KDGEAESRLARAVGDAVDEVASSRVKSVRARAEESSRDERLPWVGVTTVMDDGAQDWDGFDD* |
| Coding | >OphauB2|3452 ATGGCCGTCCATGACGTAGAGGCGTCGCAAACGCCCTTTATCAAAAACCTCGCGTCGAGCGACCGCAGACTTCGC ACCCAGTCCCTCGCAGCTCTGCATGCCTACCTCTCCAGCCGAACACGCCTCACAGACCTCGACGCAACGCGCCTC TGGACAGGCTTATTCTGGGCTCTATGGATGACGGATCGCGTGCGCCCCCAGGCCAAGCTGGCAGACGAATTGGCA GACCTAGTCTTTGCATTTACTCGGCCAGAGCATCCCTCACAAATACCCCAAGACGCAGCACCCACATCACCTGAC AAATCAGCACCGCAAGCCCAACTCCAAACTTCATCACCGCTAGACGCCTCTTCTCTCCAAGACCTATCCACCACC TGGCTCCGCGCCGGCTGGTCCGTCCTCTCTACAAACTGGTCCCGCATCGACGCCCTCCGCCTCGACAAATTCCTC CTCCTCGCCCGCCGCCTCTTGGCCGCCCACCTCCGCCTCGCCTCGCATCCTCCCCTCCTCCACGTCTTGCGCACC CATGTCCTCGACGTTGCCGACGAGACTGGCGTCGCGCTCGGCCTGCGCCTGCACGTTTTGGATATCTGGGTCGAT GAGCTGGAGCGCATCGGCGCCCTCAAACCTGCCGCGCCGGACATGGCAGAGGGTGCCGATCAGCAGGATGCGAGG AAGGATGGCGAAGCAGAGAGTAGACTGGCGCGTGCAGTGGGAGACGCGGTTGACGAGGTTGCGTCTAGTCGGGTA AAGAGCGTGAGGGCGCGGGCAGAGGAGAGTAGTCGTGATGAGCGGCTTCCTTGGGTGGGCGTTACAACGGTCATG GATGATGGTGCCCAAGACTGGGACGGCTTTGACGATTGA |
| Transcript | >OphauB2|3452 ATGGCCGTCCATGACGTAGAGGCGTCGCAAACGCCCTTTATCAAAAACCTCGCGTCGAGCGACCGCAGACTTCGC ACCCAGTCCCTCGCAGCTCTGCATGCCTACCTCTCCAGCCGAACACGCCTCACAGACCTCGACGCAACGCGCCTC TGGACAGGCTTATTCTGGGCTCTATGGATGACGGATCGCGTGCGCCCCCAGGCCAAGCTGGCAGACGAATTGGCA GACCTAGTCTTTGCATTTACTCGGCCAGAGCATCCCTCACAAATACCCCAAGACGCAGCACCCACATCACCTGAC AAATCAGCACCGCAAGCCCAACTCCAAACTTCATCACCGCTAGACGCCTCTTCTCTCCAAGACCTATCCACCACC TGGCTCCGCGCCGGCTGGTCCGTCCTCTCTACAAACTGGTCCCGCATCGACGCCCTCCGCCTCGACAAATTCCTC CTCCTCGCCCGCCGCCTCTTGGCCGCCCACCTCCGCCTCGCCTCGCATCCTCCCCTCCTCCACGTCTTGCGCACC CATGTCCTCGACGTTGCCGACGAGACTGGCGTCGCGCTCGGCCTGCGCCTGCACGTTTTGGATATCTGGGTCGAT GAGCTGGAGCGCATCGGCGCCCTCAAACCTGCCGCGCCGGACATGGCAGAGGGTGCCGATCAGCAGGATGCGAGG AAGGATGGCGAAGCAGAGAGTAGACTGGCGCGTGCAGTGGGAGACGCGGTTGACGAGGTTGCGTCTAGTCGGGTA AAGAGCGTGAGGGCGCGGGCAGAGGAGAGTAGTCGTGATGAGCGGCTTCCTTGGGTGGGCGTTACAACGGTCATG GATGATGGTGCCCAAGACTGGGACGGCTTTGACGATTGA |
| Gene | >OphauB2|3452 ATGGCCGTCCATGACGTAGAGGCGTCGCAAACGCCCTTTATCAAAAACCTCGCGTCGAGCGGTACGCATAACCCA TACCTATAAAACCCGTCTTTGCTTCTAATCTTTACAGACCGCAGACTTCGCACCCAGTCCCTCGCAGCTCTGCAT GCCTACCTCTCCAGCCGAACACGCCTCACAGACCTCGACGCAACGCGCCTCTGGACAGGCTTATTCTGGGCTCTA TGGATGACGGATCGCGTGCGCCCCCAGGCCAAGCTGGCAGACGAATTGGCAGACCTAGTCTTTGCATTTACTCGG CCAGAGCATCCCTCACAAATACCCCAAGACGCAGCACCCACATCACCTGACAAATCAGCACCGCAAGCCCAACTC CAAACTTCATCACCGCTAGACGCCTCTTCTCTCCAAGACCTATCCACCACCTGGCTCCGCGCCGGCTGGTCCGTC CTCTCTACAAACTGGTCCCGCATCGACGCCCTCCGCCTCGACAAATTCCTCCTCCTCGCCCGCCGCCTCTTGGCC GCCCACCTCCGCCTCGCCTCGCATCCTCCCCTCCTCCACGTCTTGCGCACCCATGTCCTCGACGTTGCCGACGAG ACTGGCGTCGCGCTCGGCCTGCGCCTGCACGTTTTGGATATCTGGGTCGATGAGCTGGAGCGCATCGGCGCCCTC AAACCTGCCGCGCCGGACATGGCAGAGGGTGCCGATCAGCAGGATGCGAGGAAGGATGGCGAAGCAGAGAGTAGA CTGGCGCGTGCAGTGGGAGACGCGGTTGACGAGGTTGCGTCTAGTCGGGTAAAGAGCGTGAGGGCGCGGGCAGAG GAGAGTAGTCGTGATGAGCGGCTTCCTTGGGTGGGCGTTACAACGGTCATGGATGATGGTGCCCAAGACTGGGAC GGCTTTGACGATTGA |