© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3391 |
| Gene name | |
| Location | Contig_216:20721..21172 |
| Strand | - |
| Gene length (bp) | 451 |
| Transcript length (bp) | 315 |
| Coding sequence length (bp) | 315 |
| Protein length (aa) | 105 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF15630 | CENP-S | CENP-S protein | 3.6E-34 | 11 | 86 |
| PF15511 | CENP-T_C | Centromere kinetochore component CENP-T histone fold | 1.2E-07 | 37 | 87 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9D084|CENPS_MOUSE | Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1 | 10 | 86 | 5.0E-19 |
| sp|Q8N2Z9|CENPS_HUMAN | Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1 | 10 | 86 | 1.0E-16 |
| sp|Q2TBR7|CENPS_BOVIN | Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1 | 11 | 86 | 1.0E-15 |
| sp|Q3E835|MHF1_YEAST | MHF histone-fold complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MHF1 PE=1 SV=1 | 8 | 88 | 5.0E-15 |
| sp|E1BSW7|CENPS_CHICK | Centromere protein S OS=Gallus gallus GN=APITD1 PE=1 SV=2 | 11 | 96 | 1.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9D084|CENPS_MOUSE | Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1 | 10 | 86 | 5.0E-19 |
| sp|Q8N2Z9|CENPS_HUMAN | Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1 | 10 | 86 | 1.0E-16 |
| sp|Q2TBR7|CENPS_BOVIN | Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1 | 11 | 86 | 1.0E-15 |
| sp|Q3E835|MHF1_YEAST | MHF histone-fold complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MHF1 PE=1 SV=1 | 8 | 88 | 5.0E-15 |
| sp|E1BSW7|CENPS_CHICK | Centromere protein S OS=Gallus gallus GN=APITD1 PE=1 SV=2 | 11 | 96 | 1.0E-13 |
| sp|Q5AL63|MHF1_CANAL | MHF histone-fold complex subunit 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MHF1 PE=3 SV=1 | 12 | 88 | 2.0E-13 |
| sp|Q6NRI8|CENPS_XENLA | Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1 | 11 | 99 | 1.0E-12 |
| sp|O74807|MHF1_SCHPO | MHF histone-fold complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mhf1 PE=1 SV=2 | 9 | 93 | 2.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071821 | FANCM-MHF complex | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:0140513 | nuclear protein-containing complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3391 MADATSQDDRERLKSALWFAVGKIVDEEALNRGMNATPQFIGALTELVWAQIENISIDLETFASHAGRSTVTTAD VLLLARKNPDLQQIMQTYVDECKAQKASK* |
| Coding | >OphauB2|3391 ATGGCCGACGCGACTAGCCAGGACGACCGCGAGCGTCTCAAGTCTGCGCTATGGTTCGCCGTTGGAAAAATCGTT GACGAGGAAGCGCTGAACCGAGGCATGAATGCAACACCACAATTCATTGGCGCCCTGACAGAGTTGGTTTGGGCT CAGATTGAAAACATTTCCATTGACCTTGAAACTTTTGCCTCCCACGCGGGTCGCTCCACGGTTACTACGGCCGAT GTGCTGCTGCTTGCACGCAAAAATCCCGACTTGCAGCAAATCATGCAGACATATGTTGATGAGTGCAAGGCCCAG AAGGCCAGCAAATAA |
| Transcript | >OphauB2|3391 ATGGCCGACGCGACTAGCCAGGACGACCGCGAGCGTCTCAAGTCTGCGCTATGGTTCGCCGTTGGAAAAATCGTT GACGAGGAAGCGCTGAACCGAGGCATGAATGCAACACCACAATTCATTGGCGCCCTGACAGAGTTGGTTTGGGCT CAGATTGAAAACATTTCCATTGACCTTGAAACTTTTGCCTCCCACGCGGGTCGCTCCACGGTTACTACGGCCGAT GTGCTGCTGCTTGCACGCAAAAATCCCGACTTGCAGCAAATCATGCAGACATATGTTGATGAGTGCAAGGCCCAG AAGGCCAGCAAATAA |
| Gene | >OphauB2|3391 ATGGCCGACGCGACTAGCCAGGACGACCGCGAGGCAAGCCGCTACCCTTTTTGTCCATCCGTAGCTACTAGGACT GCTCACTGACCTTGTTCAATTCATTAGCGTCTCAAGTCTGCGCTATGGTTCGCCGTTGGAAAAATCGTTGACGAG GAAGCGCTGAACCGAGGCATGAATGCAACACCACAATTCATTGGCGCCCTGACAGAGTTGGTTTGGGCTCAGATT GGTACCTTGCCCATAATACCCAGCTCCCATCATCGAGCCTTGGGCCCTACTAACCTACCCAACTACAGAAAACAT TTCCATTGACCTTGAAACTTTTGCCTCCCACGCGGGTCGCTCCACGGTTACTACGGCCGATGTGCTGCTGCTTGC ACGCAAAAATCCCGACTTGCAGCAAATCATGCAGACATATGTTGATGAGTGCAAGGCCCAGAAGGCCAGCAAATA A |