© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3386 |
| Gene name | |
| Location | Contig_216:7692..9426 |
| Strand | + |
| Gene length (bp) | 1734 |
| Transcript length (bp) | 1545 |
| Coding sequence length (bp) | 1545 |
| Protein length (aa) | 515 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04042 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B | 2.2E-47 | 230 | 461 |
| PF18018 | DNA_pol_D_N | DNA polymerase delta subunit OB-fold domain | 2.9E-37 | 47 | 184 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P46957|DPOD2_YEAST | DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1 | 40 | 504 | 2.0E-80 |
| sp|Q9LRE5|DPOD2_ORYSJ | DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1 | 40 | 502 | 8.0E-75 |
| sp|P87324|DPOD2_SCHPO | DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 | 44 | 497 | 3.0E-73 |
| sp|O48520|DPOD2_ARATH | DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2 | 25 | 506 | 2.0E-72 |
| sp|O35654|DPOD2_MOUSE | DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=1 SV=2 | 42 | 495 | 1.0E-64 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P46957|DPOD2_YEAST | DNA polymerase delta small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1 | 40 | 504 | 2.0E-80 |
| sp|Q9LRE5|DPOD2_ORYSJ | DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1 | 40 | 502 | 8.0E-75 |
| sp|P87324|DPOD2_SCHPO | DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc1 PE=1 SV=1 | 44 | 497 | 3.0E-73 |
| sp|O48520|DPOD2_ARATH | DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2 | 25 | 506 | 2.0E-72 |
| sp|O35654|DPOD2_MOUSE | DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=1 SV=2 | 42 | 495 | 1.0E-64 |
| sp|P49005|DPOD2_HUMAN | DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1 | 42 | 495 | 3.0E-64 |
| sp|P49004|DPOD2_BOVIN | DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2 | 42 | 495 | 2.0E-63 |
| sp|Q6AXY4|DPOD2_RAT | DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1 | 42 | 495 | 3.0E-63 |
| sp|Q9W088|DPOD2_DROME | DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1 | 25 | 505 | 4.0E-60 |
| sp|O93610|DPOD2_XENLA | DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1 | 256 | 497 | 1.0E-46 |
| sp|Q19366|DPOD2_CAEEL | Probable DNA polymerase delta small subunit OS=Caenorhabditis elegans GN=F12F6.7 PE=3 SV=1 | 39 | 495 | 2.0E-28 |
| sp|O93610|DPOD2_XENLA | DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1 | 42 | 193 | 6.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006260 | DNA replication | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3386 MAQLRELAQSLLEDSGGPPKQPLCRESSCYKPLHTFDLDQGRPYQQQYGDMYFLRLVKLKSVVDEVAAAAWEGTI IGDEEAKKVDRVLNVRQGDLCWVVGTVYMEMALKPNVLEDVINDRWVTAPLTTQRYYNDDELDQIMLEDDSGRLR LVGQMLSMVPMVTGCIVAVLGTENSAGEFEVLDLKLPEMAPQPGRWALTNPSLADAKGKAKAEDEDEEMTDASQK PGNKIAIVSGLNFVANDASHALELNLLLEFLVGEALESPMQDEVAHISRLIIAGNSISTVTDQKPEKRAPEKKIH KKYGYDSSTFNPLPSKLFDEFITELLPSMPITLLPGSQDPANAIYPQQPIHMAMFYDARQYGADEAKSPSLPGWF DTVTNPFEAEIDGWRILGTGGQNIDDVFKYIDSDDRLGMMDAMCRWRCCAPTAPDTLWSYPFQEDEPFVMQACPH VYFVGCQPEFSTRRIYGSQGQTVRLITVPSFSETKEIVLLDTETLEATRLKIGVDVPRPEEAEM* |
| Coding | >OphauB2|3386 ATGGCTCAGCTTCGCGAATTGGCCCAAAGCCTCTTAGAAGACTCAGGTGGTCCTCCGAAGCAGCCTCTTTGTCGA GAATCGTCATGCTACAAGCCTCTACATACTTTTGACCTCGACCAGGGGCGTCCCTACCAGCAGCAGTATGGCGAC ATGTACTTTCTGCGTCTTGTCAAACTAAAATCTGTTGTCGATGAGGTAGCCGCTGCAGCCTGGGAGGGAACCATT ATCGGTGACGAAGAGGCCAAAAAGGTCGATCGGGTCCTCAATGTGCGCCAGGGCGACTTGTGCTGGGTTGTAGGA ACAGTATACATGGAGATGGCCCTCAAGCCCAATGTCCTCGAAGACGTGATCAACGACCGCTGGGTAACGGCTCCC TTGACTACTCAACGATACTACAACGACGACGAGCTGGACCAAATCATGCTTGAAGACGACTCGGGCCGGCTTCGC TTGGTTGGCCAGATGCTCAGCATGGTTCCCATGGTGACGGGCTGCATCGTTGCCGTCTTGGGCACGGAGAATAGC GCTGGCGAGTTTGAGGTGCTCGATCTCAAGCTCCCCGAGATGGCCCCCCAGCCTGGACGCTGGGCTCTCACCAAT CCCAGCCTGGCTGATGCCAAGGGAAAGGCTAAGGCTGAAGACGAAGACGAGGAGATGACTGACGCTTCGCAAAAG CCAGGCAACAAGATTGCCATTGTTTCCGGTCTCAATTTTGTCGCCAACGATGCCTCCCATGCGCTGGAGCTGAAT TTATTGCTCGAGTTCTTAGTGGGAGAAGCGCTTGAGTCGCCGATGCAGGACGAGGTGGCACACATCAGCCGCCTC ATCATAGCCGGCAACTCGATTTCGACCGTTACTGATCAGAAGCCGGAAAAGCGCGCGCCAGAAAAAAAGATACAT AAAAAGTACGGATATGACTCGAGCACGTTTAATCCTCTGCCGTCAAAGCTGTTTGATGAATTCATCACCGAGCTG CTGCCCTCGATGCCCATTACCCTGCTGCCCGGCTCGCAGGACCCTGCCAATGCAATCTATCCGCAACAGCCCATC CACATGGCCATGTTTTATGATGCAAGGCAATATGGCGCAGATGAAGCCAAGTCGCCGTCGCTGCCTGGCTGGTTT GATACGGTGACGAATCCCTTTGAGGCAGAAATCGATGGCTGGAGAATACTAGGCACAGGGGGGCAGAATATAGAC GATGTCTTCAAGTACATTGACAGCGACGACCGGCTGGGCATGATGGATGCCATGTGCCGATGGAGATGCTGTGCT CCCACGGCGCCGGATACGCTATGGAGCTACCCTTTTCAGGAGGATGAGCCTTTTGTCATGCAGGCTTGTCCGCAT GTCTACTTTGTCGGATGCCAGCCCGAGTTTTCCACGAGAAGAATCTACGGGTCTCAAGGGCAAACGGTGCGCCTC ATTACCGTGCCGTCCTTTTCAGAGACCAAGGAGATTGTGCTCTTGGACACGGAGACGCTCGAGGCTACCAGGCTC AAGATTGGGGTCGACGTGCCCAGACCCGAGGAAGCTGAGATGTAG |
| Transcript | >OphauB2|3386 ATGGCTCAGCTTCGCGAATTGGCCCAAAGCCTCTTAGAAGACTCAGGTGGTCCTCCGAAGCAGCCTCTTTGTCGA GAATCGTCATGCTACAAGCCTCTACATACTTTTGACCTCGACCAGGGGCGTCCCTACCAGCAGCAGTATGGCGAC ATGTACTTTCTGCGTCTTGTCAAACTAAAATCTGTTGTCGATGAGGTAGCCGCTGCAGCCTGGGAGGGAACCATT ATCGGTGACGAAGAGGCCAAAAAGGTCGATCGGGTCCTCAATGTGCGCCAGGGCGACTTGTGCTGGGTTGTAGGA ACAGTATACATGGAGATGGCCCTCAAGCCCAATGTCCTCGAAGACGTGATCAACGACCGCTGGGTAACGGCTCCC TTGACTACTCAACGATACTACAACGACGACGAGCTGGACCAAATCATGCTTGAAGACGACTCGGGCCGGCTTCGC TTGGTTGGCCAGATGCTCAGCATGGTTCCCATGGTGACGGGCTGCATCGTTGCCGTCTTGGGCACGGAGAATAGC GCTGGCGAGTTTGAGGTGCTCGATCTCAAGCTCCCCGAGATGGCCCCCCAGCCTGGACGCTGGGCTCTCACCAAT CCCAGCCTGGCTGATGCCAAGGGAAAGGCTAAGGCTGAAGACGAAGACGAGGAGATGACTGACGCTTCGCAAAAG CCAGGCAACAAGATTGCCATTGTTTCCGGTCTCAATTTTGTCGCCAACGATGCCTCCCATGCGCTGGAGCTGAAT TTATTGCTCGAGTTCTTAGTGGGAGAAGCGCTTGAGTCGCCGATGCAGGACGAGGTGGCACACATCAGCCGCCTC ATCATAGCCGGCAACTCGATTTCGACCGTTACTGATCAGAAGCCGGAAAAGCGCGCGCCAGAAAAAAAGATACAT AAAAAGTACGGATATGACTCGAGCACGTTTAATCCTCTGCCGTCAAAGCTGTTTGATGAATTCATCACCGAGCTG CTGCCCTCGATGCCCATTACCCTGCTGCCCGGCTCGCAGGACCCTGCCAATGCAATCTATCCGCAACAGCCCATC CACATGGCCATGTTTTATGATGCAAGGCAATATGGCGCAGATGAAGCCAAGTCGCCGTCGCTGCCTGGCTGGTTT GATACGGTGACGAATCCCTTTGAGGCAGAAATCGATGGCTGGAGAATACTAGGCACAGGGGGGCAGAATATAGAC GATGTCTTCAAGTACATTGACAGCGACGACCGGCTGGGCATGATGGATGCCATGTGCCGATGGAGATGCTGTGCT CCCACGGCGCCGGATACGCTATGGAGCTACCCTTTTCAGGAGGATGAGCCTTTTGTCATGCAGGCTTGTCCGCAT GTCTACTTTGTCGGATGCCAGCCCGAGTTTTCCACGAGAAGAATCTACGGGTCTCAAGGGCAAACGGTGCGCCTC ATTACCGTGCCGTCCTTTTCAGAGACCAAGGAGATTGTGCTCTTGGACACGGAGACGCTCGAGGCTACCAGGCTC AAGATTGGGGTCGACGTGCCCAGACCCGAGGAAGCTGAGATGTAG |
| Gene | >OphauB2|3386 ATGGCTCAGCTTCGCGAATTGGCCCAAAGCCTCTTAGAAGACTCAGGGTAAGTACCGCGTCTTGACTTCAATCTT GCTTGGTCCTTGGCCCCCATCGCTAATTGCAGCCAGCAGTGGTCCTCCGAAGCAGCCTCTTTGTCGAGAATCGTC ATGCTACAAGCCTCTACATACTTTTGACCTCGACCAGGGGCGTCCCTACCAGCAGCAGTATGGCGACATGTACTT TCTGCGTCTTGTCAAACTAAAATCTGTTGTCGATGAGGTAGCCGCTGCAGCCTGGGAGGGAACCATTATCGGTGA CGAAGAGGCCAAAAAGGTCGATCGGGTCCTCAATGTGCGCCAGGGCGACTTGTGCTGGGTTGTAGGAACAGTATA CATGGAGATGGCCCTCAAGCCCAATGTCCTCGAAGACGTGATCAACGACGTGAGATGGTCTATTCTCCAGCCATC CTTGCTGGACACGCTTGAGGACCTGCTGACATGGCGACTAGCGCTGGGTAACGGCTCCCTTGACTACTCAACGAT ACTACAACGACGACGAGCTGGACCAAATCATGCTTGAAGACGACTCGGGCCGGCTTCGCTTGGTTGGCCAGATGC TCAGCATGGTTCCCATGGTGACGGGCTGCATCGTTGCCGTCTTGGGCACGGAGAATAGCGCTGGCGAGTTTGAGG TGCTCGATCTCAAGCTCCCCGAGATGGCCCCCCAGCCTGGACGCTGGGCTCTCACCAATCCCAGCCTGGCTGATG CCAAGGGAAAGGCTAAGGCTGAAGACGAAGACGAGGAGATGACTGACGCTTCGCAAAAGCCAGGCAACAAGATTG CCATTGTTTCCGGTCTCAATTTTGTCGCCAACGATGCCTCCCATGCGCTGGAGCTGAATTTATTGCTCGAGTTCT TAGTGGGAGAAGCGCTTGAGTCGCCGATGCAGGACGAGGTGGCACACATCAGCCGCCTCATCATAGCCGGCAACT CGATTTCGACCGTTACTGATCAGAAGCCGGAAAAGCGCGCGCCAGAAAAAAAGATACATAAAAAGTACGGATATG ACTCGAGCACGTTTAATCCTCTGCCGTCAAAGCTGTTTGATGAATTCATCACCGAGCTGCTGCCCTCGATGCCCA TTACCCTGCTGCCCGGCTCGCAGGACCCTGCCAATGCAATCTATCCGCAACAGCCCATCCACATGGCCATGTTTT ATGATGCAAGGCAATATGGCGCAGATGAAGCCAAGTCGCCGTCGCTGCCTGGCTGGTTTGATACGGTGACGAATC CCTTTGAGGCAGAAATCGATGGCTGGAGAATACTAGGCACAGGGGGGCAGAATATAGACGATGTCTTCAAGTACA TTGACAGCGACGACCGGCTGGGCATGATGGATGCCATGTGCCGATGGAGATGCTGTGCTCCCACGGCGCCGGATA CGCTATGTAAGCTGCTTTCACATGCTAGATCAAGGTCCTCGGTGCTGATGCCTCTTGTCAGGGAGCTACCCTTTT CAGGAGGATGAGCCTTTTGTCATGCAGGCTTGTCCGCATGTCTACTTTGTCGGATGCCAGCCCGAGTTTTCCACG AGAAGAATCTACGGGTCTCAAGGGCAAACGGTGCGCCTCATTACCGTGCCGTCCTTTTCAGAGACCAAGGAGATT GTGCTCTTGGACACGGAGACGCTCGAGGCTACCAGGCTCAAGATTGGGGTCGACGTGCCCAGACCCGAGGAAGCT GAGATGTAG |