Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3373
Gene name
LocationContig_214:25046..25585
Strand+
Gene length (bp)539
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11221 Med21 Subunit 21 of Mediator complex 2.6E-43 1 136

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7S8C2|MED21_NEUCR Mediator of RNA polymerase II transcription subunit 21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=srb-7 PE=3 SV=1 1 137 7.0E-47
sp|Q6FNK3|MED21_CANGA Mediator of RNA polymerase II transcription subunit 21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SRB7 PE=3 SV=1 1 132 1.0E-17
sp|Q6C5U8|MED21_YARLI Mediator of RNA polymerase II transcription subunit 21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SRB7 PE=3 SV=1 1 132 1.0E-15
sp|O94376|MED21_SCHPO Mediator of RNA polymerase II transcription subunit 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=med21 PE=1 SV=1 1 132 2.0E-15
sp|Q75EX7|MED21_ASHGO Mediator of RNA polymerase II transcription subunit 21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SRB7 PE=3 SV=2 1 133 6.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|Q7S8C2|MED21_NEUCR Mediator of RNA polymerase II transcription subunit 21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=srb-7 PE=3 SV=1 1 137 7.0E-47
sp|Q6FNK3|MED21_CANGA Mediator of RNA polymerase II transcription subunit 21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SRB7 PE=3 SV=1 1 132 1.0E-17
sp|Q6C5U8|MED21_YARLI Mediator of RNA polymerase II transcription subunit 21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SRB7 PE=3 SV=1 1 132 1.0E-15
sp|O94376|MED21_SCHPO Mediator of RNA polymerase II transcription subunit 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=med21 PE=1 SV=1 1 132 2.0E-15
sp|Q75EX7|MED21_ASHGO Mediator of RNA polymerase II transcription subunit 21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SRB7 PE=3 SV=2 1 133 6.0E-15
sp|A1C712|MED21_ASPCL Mediator of RNA polymerase II transcription subunit 21 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=srb7 PE=3 SV=1 1 127 1.0E-14
sp|Q6BQ63|MED21_DEBHA Mediator of RNA polymerase II transcription subunit 21 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SRB7 PE=3 SV=1 1 132 9.0E-14
sp|P47822|MED21_YEAST Mediator of RNA polymerase II transcription subunit 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRB7 PE=1 SV=1 1 132 2.0E-13
sp|A3LS24|MED21_PICST Mediator of RNA polymerase II transcription subunit 21 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SRB7 PE=3 SV=1 1 132 5.0E-13
sp|Q2UF93|MED21_ASPOR Mediator of RNA polymerase II transcription subunit 21 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=srb7 PE=3 SV=1 57 135 6.0E-13
sp|A2QC41|MED21_ASPNC Mediator of RNA polymerase II transcription subunit 21 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=srb7 PE=3 SV=2 1 137 7.0E-13
sp|Q5ACU4|MED21_CANAL Mediator of RNA polymerase II transcription subunit 21 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SRB7 PE=3 SV=1 1 135 1.0E-12
sp|Q6CT76|MED21_KLULA Mediator of RNA polymerase II transcription subunit 21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SRB7 PE=3 SV=2 1 122 3.0E-12
sp|Q4X0I5|MED21_ASPFU Mediator of RNA polymerase II transcription subunit 21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=srb7 PE=3 SV=1 53 135 3.0E-11
sp|Q1DXC2|MED21_COCIM Mediator of RNA polymerase II transcription subunit 21 OS=Coccidioides immitis (strain RS) GN=SRB7 PE=3 SV=3 1 137 8.0E-11
sp|Q0U499|MED21_PHANO Mediator of RNA polymerase II transcription subunit 21 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SRB7 PE=3 SV=1 1 137 2.0E-09
sp|A1DHP1|MED21_NEOFI Mediator of RNA polymerase II transcription subunit 21 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=srb7 PE=3 SV=1 53 135 9.0E-09
sp|Q5AZQ7|MED21_EMENI Mediator of RNA polymerase II transcription subunit 21 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=srb7 PE=3 SV=1 61 101 2.0E-07
sp|Q7ZTI5|MED21_DANRE Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio GN=med21 PE=2 SV=1 1 135 3.0E-06
sp|Q13503|MED21_HUMAN Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1 1 135 5.0E-06
sp|Q2TBU8|MED21_BOVIN Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1 1 135 5.0E-06
sp|Q9CQ39|MED21_MOUSE Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus GN=Med21 PE=1 SV=1 1 135 6.0E-06
sp|Q4R6N3|MED21_MACFA Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis GN=MED21 PE=2 SV=1 1 135 7.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 57 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3373
MGDRLTQLQDAVDQLAQQLVACLHFVHRRHDLETLGPKDKVRDIKQEPHQKEVDPLPADDFLAGLKELSRDLIVR
EQQIEYLISSLPGLESSQQDQARLVKDLEEDLKAAEAQRQEALKERDQTLARLDAVIRSIRRP*
Coding >OphauB2|3373
ATGGGAGACAGATTAACACAGCTACAGGACGCTGTTGATCAGCTTGCTCAGCAGCTTGTCGCCTGTCTTCACTTT
GTCCATCGCCGACACGATCTCGAGACCCTTGGCCCCAAGGATAAGGTTCGCGACATAAAGCAGGAGCCGCATCAG
AAAGAAGTCGACCCGCTTCCTGCCGACGACTTCCTGGCAGGTCTCAAGGAACTGTCCCGAGACTTGATTGTACGA
GAGCAACAGATCGAGTACCTCATCTCTTCGCTCCCTGGACTTGAAAGTAGCCAGCAGGATCAGGCACGTCTTGTT
AAAGATCTTGAAGAAGACCTTAAAGCTGCCGAGGCGCAGCGACAGGAAGCACTCAAGGAGAGAGATCAGACTCTG
GCCCGACTCGACGCAGTGATTCGCAGCATCCGACGGCCCTGA
Transcript >OphauB2|3373
ATGGGAGACAGATTAACACAGCTACAGGACGCTGTTGATCAGCTTGCTCAGCAGCTTGTCGCCTGTCTTCACTTT
GTCCATCGCCGACACGATCTCGAGACCCTTGGCCCCAAGGATAAGGTTCGCGACATAAAGCAGGAGCCGCATCAG
AAAGAAGTCGACCCGCTTCCTGCCGACGACTTCCTGGCAGGTCTCAAGGAACTGTCCCGAGACTTGATTGTACGA
GAGCAACAGATCGAGTACCTCATCTCTTCGCTCCCTGGACTTGAAAGTAGCCAGCAGGATCAGGCACGTCTTGTT
AAAGATCTTGAAGAAGACCTTAAAGCTGCCGAGGCGCAGCGACAGGAAGCACTCAAGGAGAGAGATCAGACTCTG
GCCCGACTCGACGCAGTGATTCGCAGCATCCGACGGCCCTGA
Gene >OphauB2|3373
ATGGGAGACAGATTAACACAGCTACAGGACGCTGTTGATCAGGTATGTCCCTGCATGTGCAGCTGCCATCTCGAG
ATGTTAACGGCCTGCGTCTGCAGCTTGCTCAGCAGCTTGTCGCCTGTCTTCACTTTGTCCATCGCCGACACGATC
TCGAGACCCTTGGCCCCAAGGATAAGGTTCGCGACATAAAGCAGGAGCCGCATCAGAAAGAAGGTGGGTCTTTTC
TTTGACAACATCTTTGTACATACATAGCATCACTTTGCTCATGGCAGGGTGCAGTCGACCCGCTTCCTGCCGACG
ACTTCCTGGCAGGTCTCAAGGAACTGTCCCGAGACTTGATTGTACGAGAGCAACAGATCGAGTACCTCATCTCTT
CGCTCCCTGGACTTGAAAGTAGCCAGCAGGATCAGGCACGTCTTGTTAAAGATCTTGAAGAAGACCTTAAAGCTG
CCGAGGCGCAGCGACAGGAAGCACTCAAGGAGAGAGATCAGACTCTGGCCCGACTCGACGCAGTGATTCGCAGCA
TCCGACGGCCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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