Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3352
Gene name
LocationContig_213:99..1227
Strand+
Gene length (bp)1128
Transcript length (bp)1077
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00415 RCC1 Regulator of chromosome condensation (RCC1) repeat 1.4E-09 3 53
PF13540 RCC1_2 Regulator of chromosome condensation (RCC1) repeat 2.2E-05 276 302

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O42645|YF94_SCHPO RCC1 repeat-containing protein C10F6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.04 PE=3 SV=1 4 348 2.0E-25
sp|P31386|ATS1_YEAST Protein ATS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATS1 PE=1 SV=2 1 346 6.0E-21
sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 4 308 4.0E-17
sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2 4 338 9.0E-17
sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1 4 305 2.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|O42645|YF94_SCHPO RCC1 repeat-containing protein C10F6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.04 PE=3 SV=1 4 348 2.0E-25
sp|P31386|ATS1_YEAST Protein ATS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATS1 PE=1 SV=2 1 346 6.0E-21
sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 4 308 4.0E-17
sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2 4 338 9.0E-17
sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1 4 305 2.0E-13
sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 128 305 3.0E-12
sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 4 316 1.0E-11
sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 4 316 2.0E-11
sp|Q8VE37|RCC1_MOUSE Regulator of chromosome condensation OS=Mus musculus GN=Rcc1 PE=1 SV=1 4 305 1.0E-09
sp|Q96I51|WBS16_HUMAN Williams-Beuren syndrome chromosomal region 16 protein OS=Homo sapiens GN=WBSCR16 PE=1 SV=2 4 305 6.0E-09
sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 4 326 1.0E-08
sp|O74881|BTB1_SCHPO BTB/POZ domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=btb1 PE=1 SV=1 4 224 2.0E-08
sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1 124 305 2.0E-08
sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 4 305 3.0E-08
sp|P23800|RCC1_MESAU Regulator of chromosome condensation OS=Mesocricetus auratus GN=RCC1 PE=1 SV=1 4 305 3.0E-08
sp|P18754|RCC1_HUMAN Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1 4 305 6.0E-08
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 4 311 9.0E-08
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 3 305 1.0E-07
sp|Q9CYF5|WBS16_MOUSE Williams-Beuren syndrome chromosomal region 16 protein homolog OS=Mus musculus GN=Wbscr16 PE=2 SV=1 4 305 1.0E-07
sp|Q9N1T2|RPGR_CANLF X-linked retinitis pigmentosa GTPase regulator OS=Canis lupus familiaris GN=RPGR PE=2 SV=1 4 326 2.0E-07
sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 4 266 3.0E-07
sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 27 307 3.0E-07
sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 4 326 6.0E-07
sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 2 305 6.0E-07
sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 4 221 9.0E-07
sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2 8 184 1.0E-06
sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 4 307 3.0E-06
sp|P25183|RCC1_XENLA Regulator of chromosome condensation OS=Xenopus laevis GN=rcc1 PE=2 SV=1 4 299 3.0E-06
sp|Q8NDN9|RCBT1_HUMAN RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1 PE=2 SV=1 4 287 3.0E-06
sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1 4 287 4.0E-06
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 4 307 7.0E-06
sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 4 305 8.0E-06
sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 4 316 8.0E-06
sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 4 305 9.0E-06
sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=1 SV=1 4 244 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3352
MSCVFALGSNGSGQLGIGHGQDVSVPKPLKWHSHAPTSPIISIAAGGNHTLVLSQAGQLYWAGDPTSGSCGLVAD
VKAATDGFIFQELHLSHTDKQELGPIAMIAATWEASFVVALDAQGKRTRLYGFGTGTKGELGCGESLVRTPAASQ
IEGLPVPGTEIVCLAACVDHVVVVLDNGDVYGWGNCRKSQIGEPSAVVYTPRKLDGIGFKVIKAVCAKESTCLLG
DADSGDMAPAWLDAGAGWGTIYILTNKGSLIAWGRGHHGQLPPPNLPALKRIAVGSEHVVALTYDGDVISWGWGE
HGNCGPSLGQTVVKDRWNVIASSNFIASNSRIHGIGAGCATSWICITQIQEAKDLMMQ*
Coding >OphauB2|3352
ATGAGCTGCGTCTTTGCTCTCGGCTCAAACGGATCTGGACAGCTAGGCATCGGCCACGGGCAGGATGTGTCGGTT
CCGAAGCCATTAAAGTGGCATTCCCATGCGCCCACATCACCAATCATCAGCATCGCCGCCGGCGGCAACCATACG
CTGGTTCTTAGCCAGGCTGGCCAGCTGTACTGGGCCGGTGACCCGACAAGCGGCTCATGTGGGCTGGTGGCAGAT
GTAAAGGCGGCAACAGACGGGTTTATTTTCCAGGAGCTTCACCTGAGCCACACGGACAAGCAAGAGCTGGGACCC
ATCGCAATGATTGCAGCAACCTGGGAAGCGTCTTTTGTCGTAGCTCTTGATGCTCAAGGCAAGCGGACGAGGCTT
TATGGCTTCGGAACTGGCACAAAGGGCGAGCTGGGGTGTGGAGAGTCCTTGGTGCGCACGCCAGCGGCAAGTCAA
ATTGAAGGCTTGCCTGTACCGGGCACCGAAATTGTATGCCTGGCTGCATGCGTGGACCATGTTGTTGTTGTCTTG
GACAACGGCGATGTTTATGGCTGGGGCAACTGCCGCAAATCCCAGATTGGAGAACCGTCAGCCGTCGTCTACACG
CCGCGCAAACTTGACGGCATTGGCTTCAAAGTAATTAAAGCAGTCTGTGCCAAAGAGTCTACATGCTTGCTTGGT
GATGCCGACAGTGGAGATATGGCTCCTGCTTGGCTCGACGCTGGAGCAGGTTGGGGGACCATCTACATATTAACC
AACAAGGGCTCTCTGATTGCTTGGGGTCGCGGCCATCACGGCCAGCTGCCACCTCCCAATCTCCCCGCGCTCAAG
CGCATTGCCGTGGGCAGCGAGCACGTTGTTGCCTTGACGTACGACGGTGACGTTATTTCGTGGGGATGGGGCGAG
CACGGCAATTGCGGCCCCAGCCTTGGCCAGACCGTCGTCAAAGACCGCTGGAACGTCATTGCTTCGTCAAACTTC
ATAGCCTCCAACAGTCGCATTCATGGTATTGGTGCCGGATGTGCTACCAGTTGGATTTGCATCACTCAAATTCAA
GAGGCCAAGGATTTAATGATGCAGTAA
Transcript >OphauB2|3352
ATGAGCTGCGTCTTTGCTCTCGGCTCAAACGGATCTGGACAGCTAGGCATCGGCCACGGGCAGGATGTGTCGGTT
CCGAAGCCATTAAAGTGGCATTCCCATGCGCCCACATCACCAATCATCAGCATCGCCGCCGGCGGCAACCATACG
CTGGTTCTTAGCCAGGCTGGCCAGCTGTACTGGGCCGGTGACCCGACAAGCGGCTCATGTGGGCTGGTGGCAGAT
GTAAAGGCGGCAACAGACGGGTTTATTTTCCAGGAGCTTCACCTGAGCCACACGGACAAGCAAGAGCTGGGACCC
ATCGCAATGATTGCAGCAACCTGGGAAGCGTCTTTTGTCGTAGCTCTTGATGCTCAAGGCAAGCGGACGAGGCTT
TATGGCTTCGGAACTGGCACAAAGGGCGAGCTGGGGTGTGGAGAGTCCTTGGTGCGCACGCCAGCGGCAAGTCAA
ATTGAAGGCTTGCCTGTACCGGGCACCGAAATTGTATGCCTGGCTGCATGCGTGGACCATGTTGTTGTTGTCTTG
GACAACGGCGATGTTTATGGCTGGGGCAACTGCCGCAAATCCCAGATTGGAGAACCGTCAGCCGTCGTCTACACG
CCGCGCAAACTTGACGGCATTGGCTTCAAAGTAATTAAAGCAGTCTGTGCCAAAGAGTCTACATGCTTGCTTGGT
GATGCCGACAGTGGAGATATGGCTCCTGCTTGGCTCGACGCTGGAGCAGGTTGGGGGACCATCTACATATTAACC
AACAAGGGCTCTCTGATTGCTTGGGGTCGCGGCCATCACGGCCAGCTGCCACCTCCCAATCTCCCCGCGCTCAAG
CGCATTGCCGTGGGCAGCGAGCACGTTGTTGCCTTGACGTACGACGGTGACGTTATTTCGTGGGGATGGGGCGAG
CACGGCAATTGCGGCCCCAGCCTTGGCCAGACCGTCGTCAAAGACCGCTGGAACGTCATTGCTTCGTCAAACTTC
ATAGCCTCCAACAGTCGCATTCATGGTATTGGTGCCGGATGTGCTACCAGTTGGATTTGCATCACTCAAATTCAA
GAGGCCAAGGATTTAATGATGCAGTAA
Gene >OphauB2|3352
ATGAGCTGCGTCTTTGCTCTCGGCTCAAACGGATCTGGACAGCTAGGCATCGGCCACGGGCAGGATGTGTCGGTT
CCGAAGCCATTAAAGTGGCATTCCCATGCGCCCACATCACCAATCATCAGCATCGCCGCCGGCGGCAACCATACG
CTGGTTCTTAGCCAGGCTGGCCAGCTGTACTGGGCCGGTGACCCGACAAGCGGCTCATGTGGGCTGGTGGCAGAT
GTAAAGGCGGCAACAGACGGGTTTATTTTCCAGGAGCTTCACCTGAGCCACACGGACAAGCAAGAGCTGGGACCC
ATCGCAATGATTGCAGCAACCTGGGAAGCGTCTTTTGTCGTAGCTCTTGATGCTCAAGGCAAGCGGACGAGGCTT
TATGGCTTCGGAACTGGCACAAAGGGCGAGCTGGGGTGTGGAGAGTCCTTGGTGCGCACGCCAGCGGCAAGTCAA
ATTGAAGGCTTGCCTGTACCGGGCACCGAAATTGTATGCCTGGCTGCATGCGTGGACCATGTTGTTGTTGTCTTG
GACAACGGCGATGTTTATGGCTGGGGCAACTGCCGCAAATCCCAGATTGGAGAACCGTCAGCCGTCGTCTACACG
CCGCGCAAACTTGACGGCATTGGCTTCAAAGTAATTAAAGCAGTCTGTGCCAAAGAGTCTACATGCTTGCTTGGT
GATGCCGACAGTGGAGATATGTGCGTCATAGGATCAGACAAGTGGCGTCTGTCTTCTGAAGCGCCTTGCAGGGCT
CCTGCTTGGCTCGACGCTGGAGCAGGTTGGGGGACCATCTACATATTAACCAACAAGGGCTCTCTGATTGCTTGG
GGTCGCGGCCATCACGGCCAGCTGCCACCTCCCAATCTCCCCGCGCTCAAGCGCATTGCCGTGGGCAGCGAGCAC
GTTGTTGCCTTGACGTACGACGGTGACGTTATTTCGTGGGGATGGGGCGAGCACGGCAATTGCGGCCCCAGCCTT
GGCCAGACCGTCGTCAAAGACCGCTGGAACGTCATTGCTTCGTCAAACTTCATAGCCTCCAACAGTCGCATTCAT
GGTATTGGTGCCGGATGTGCTACCAGTTGGATTTGCATCACTCAAATTCAAGAGGCCAAGGATTTAATGATGCAG
TAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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