Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3336
Gene name
LocationContig_211:11880..12399
Strand-
Gene length (bp)519
Transcript length (bp)519
Coding sequence length (bp)519
Protein length (aa) 173

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14856 Hce2 Pathogen effector; putative necrosis-inducing factor 8.7E-25 62 156

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 3 25 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3336
MKLLLSSCAIFLALPFFALAIPTAVQESDVSYVEKLQNKTVALEVYDQGDTTSFRLRKRTNQCGHSTFENRGSEA
SPLISDCETLMFNIRKDGRWRLSTGVHRTVATFGTCAFGAQVRKQWYTYIGHEDIIDLIRDSIRDFRRGDGKVGS
RGEMQCRGDLLWANVEWGLYHT*
Coding >OphauB2|3336
ATGAAGCTGTTACTCTCGTCTTGCGCTATATTTCTGGCTCTACCATTTTTTGCTCTGGCTATTCCCACTGCCGTT
CAAGAGAGCGATGTCTCATACGTGGAAAAGCTGCAGAATAAGACGGTTGCTCTAGAGGTCTATGACCAAGGCGAT
ACAACTTCCTTCCGACTCAGAAAGAGAACTAATCAGTGTGGCCACTCCACCTTTGAGAATCGAGGCAGCGAGGCG
TCTCCTCTAATTTCAGACTGTGAAACCTTGATGTTCAATATTAGAAAAGACGGCCGCTGGAGACTGTCAACCGGC
GTGCACCGAACAGTGGCTACATTCGGTACTTGCGCATTTGGTGCTCAGGTTAGAAAGCAATGGTACACCTATATT
GGCCACGAAGACATAATTGATCTCATAAGAGACTCCATTCGCGATTTCAGAAGAGGCGACGGCAAGGTCGGCTCC
AGGGGCGAGATGCAGTGCCGTGGAGACTTGCTGTGGGCAAATGTCGAGTGGGGTCTTTACCATACATAA
Transcript >OphauB2|3336
ATGAAGCTGTTACTCTCGTCTTGCGCTATATTTCTGGCTCTACCATTTTTTGCTCTGGCTATTCCCACTGCCGTT
CAAGAGAGCGATGTCTCATACGTGGAAAAGCTGCAGAATAAGACGGTTGCTCTAGAGGTCTATGACCAAGGCGAT
ACAACTTCCTTCCGACTCAGAAAGAGAACTAATCAGTGTGGCCACTCCACCTTTGAGAATCGAGGCAGCGAGGCG
TCTCCTCTAATTTCAGACTGTGAAACCTTGATGTTCAATATTAGAAAAGACGGCCGCTGGAGACTGTCAACCGGC
GTGCACCGAACAGTGGCTACATTCGGTACTTGCGCATTTGGTGCTCAGGTTAGAAAGCAATGGTACACCTATATT
GGCCACGAAGACATAATTGATCTCATAAGAGACTCCATTCGCGATTTCAGAAGAGGCGACGGCAAGGTCGGCTCC
AGGGGCGAGATGCAGTGCCGTGGAGACTTGCTGTGGGCAAATGTCGAGTGGGGTCTTTACCATACATAA
Gene >OphauB2|3336
ATGAAGCTGTTACTCTCGTCTTGCGCTATATTTCTGGCTCTACCATTTTTTGCTCTGGCTATTCCCACTGCCGTT
CAAGAGAGCGATGTCTCATACGTGGAAAAGCTGCAGAATAAGACGGTTGCTCTAGAGGTCTATGACCAAGGCGAT
ACAACTTCCTTCCGACTCAGAAAGAGAACTAATCAGTGTGGCCACTCCACCTTTGAGAATCGAGGCAGCGAGGCG
TCTCCTCTAATTTCAGACTGTGAAACCTTGATGTTCAATATTAGAAAAGACGGCCGCTGGAGACTGTCAACCGGC
GTGCACCGAACAGTGGCTACATTCGGTACTTGCGCATTTGGTGCTCAGGTTAGAAAGCAATGGTACACCTATATT
GGCCACGAAGACATAATTGATCTCATAAGAGACTCCATTCGCGATTTCAGAAGAGGCGACGGCAAGGTCGGCTCC
AGGGGCGAGATGCAGTGCCGTGGAGACTTGCTGTGGGCAAATGTCGAGTGGGGTCTTTACCATACATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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