© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3324 |
| Gene name | |
| Location | Contig_210:5971..8306 |
| Strand | - |
| Gene length (bp) | 2335 |
| Transcript length (bp) | 2265 |
| Coding sequence length (bp) | 2265 |
| Protein length (aa) | 755 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04042 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B | 1.2E-49 | 449 | 714 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94263|DPB2_SCHPO | DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1 | 53 | 754 | 2.0E-83 |
| sp|P24482|DPB2_YEAST | DNA polymerase epsilon subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPB2 PE=1 SV=3 | 46 | 752 | 2.0E-79 |
| sp|Q6C030|DPB2_YARLI | DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB2 PE=3 SV=1 | 45 | 754 | 2.0E-74 |
| sp|Q6BQR8|DPB2_DEBHA | DNA polymerase epsilon subunit B OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPB2 PE=3 SV=1 | 47 | 741 | 4.0E-73 |
| sp|Q6CPH8|DPB2_KLULA | DNA polymerase epsilon subunit B OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPB2 PE=3 SV=1 | 45 | 752 | 2.0E-69 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94263|DPB2_SCHPO | DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1 | 53 | 754 | 2.0E-83 |
| sp|P24482|DPB2_YEAST | DNA polymerase epsilon subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPB2 PE=1 SV=3 | 46 | 752 | 2.0E-79 |
| sp|Q6C030|DPB2_YARLI | DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB2 PE=3 SV=1 | 45 | 754 | 2.0E-74 |
| sp|Q6BQR8|DPB2_DEBHA | DNA polymerase epsilon subunit B OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPB2 PE=3 SV=1 | 47 | 741 | 4.0E-73 |
| sp|Q6CPH8|DPB2_KLULA | DNA polymerase epsilon subunit B OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPB2 PE=3 SV=1 | 45 | 752 | 2.0E-69 |
| sp|Q758V1|DPB2_ASHGO | DNA polymerase epsilon subunit B OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB2 PE=3 SV=1 | 43 | 729 | 7.0E-69 |
| sp|Q6FSK8|DPB2_CANGA | DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPB2 PE=3 SV=1 | 46 | 742 | 9.0E-69 |
| sp|P0CN24|DPB2_CRYNJ | DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1 | 196 | 753 | 6.0E-46 |
| sp|P0CN25|DPB2_CRYNB | DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1 | 196 | 753 | 6.0E-46 |
| sp|Q5ZKQ6|DPOE2_CHICK | DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1 | 198 | 728 | 2.0E-31 |
| sp|Q54Y85|DPOE2_DICDI | DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1 | 202 | 739 | 2.0E-31 |
| sp|P56282|DPOE2_HUMAN | DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2 | 202 | 728 | 4.0E-31 |
| sp|A7YWS7|DPOE2_BOVIN | DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1 | 202 | 728 | 7.0E-31 |
| sp|O54956|DPOE2_MOUSE | DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2 | 202 | 734 | 1.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006260 | DNA replication | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3324 MDTTPAPIFRKKRPLASSSLPSSSPAFATPVHPPKAYAARAPKAAILPIILPPTTLRPLAFRTFTKKHSLTLTSS ALQELAVFVGRHCGSGWREDGLAERVLEEVARAWKKRNGGVIVEGGNVQLAQILKTMEGSMSGGRVAGAARAESI MDGVGDEASTRMGLRPVGMVREKSGVGFGGGGEQGDGMEEEEEAGTDVRAWLKVVDAFEQPRLLFNVHKKHFERD VAKASVLSPPSHKTTAFRNRYHVIHQRLQRNEALDSPSICRSRKRPRTSQAQSLHLTPIANMLGRHGTSHMLLGL LMTLPTGALALSDLTGSIALDVGRAVAIPADAAWFCPGMIVLVDGVYQEDSGPVGVGLAGSSGIGGTLGGTFEVF FLGQPPCEKRAVTLGIGAPDGGIDHVIGGGFGWVDFVGVGSERAVGAKMARLQQRLLPAPSDAPSEPRAGRNRII LVGHVTLDNARALAALAKILALYAAEPPAALPLAFILTGNFASHAALSRPSSTSIEYKESFDALASVLAAFPSLL TAATFVLVPGDKDAWDSAFGAGAAVPLPRARVPDLFTSRVRRAFAAANAKGGRQGSVAGEAVCTTNPCRLTLFGP RHEVVVFCDDVSARLRRMAISPGGKKRHHHDNDNNNNNNDDDGEKPLLAQTTPHGKSIDERDAQRLVKSLLDQGH LAPFPPASRPLYWDWATALHLYPLPTALALVDASAPPFVVSYEGCHVMNPGTLLAPGGAVARWVEYEVGRGARVR EQRL* |
| Coding | >OphauB2|3324 ATGGACACCACGCCCGCCCCCATTTTCCGCAAAAAACGACCCCTCGCCTCCTCGTCATTGCCATCATCCTCTCCC GCCTTTGCCACGCCCGTCCACCCCCCCAAGGCATATGCCGCGCGCGCCCCCAAGGCCGCCATCCTACCCATCATC CTGCCCCCGACGACGCTGCGGCCGCTCGCCTTTCGCACCTTTACCAAGAAGCACTCGTTGACACTCACCTCGTCT GCGCTGCAGGAGCTGGCCGTCTTTGTCGGGCGGCACTGCGGCTCGGGCTGGCGGGAAGACGGGCTGGCGGAACGG GTGCTGGAAGAGGTGGCGCGGGCGTGGAAGAAGCGCAATGGCGGCGTCATTGTCGAGGGTGGGAATGTGCAGCTG GCGCAGATTCTAAAGACGATGGAGGGGAGTATGAGTGGGGGGAGGGTGGCGGGCGCGGCGAGGGCGGAGAGTATT ATGGATGGGGTGGGGGATGAGGCGAGTACGCGCATGGGGCTGAGGCCGGTGGGGATGGTGAGGGAGAAGAGTGGT GTGGGCTTTGGAGGGGGGGGGGAGCAAGGGGATGGGATGGAGGAGGAGGAGGAGGCGGGCACGGATGTGCGGGCG TGGCTCAAGGTGGTGGATGCGTTTGAGCAGCCGCGGCTCCTCTTTAACGTGCACAAGAAGCATTTTGAGAGAGAC GTGGCCAAGGCGTCCGTCTTGTCGCCGCCGAGCCACAAGACGACAGCCTTTCGCAACCGCTACCACGTAATCCAC CAGCGCCTGCAACGCAACGAAGCCCTCGACTCGCCCAGCATTTGCCGCTCGCGCAAGCGCCCCCGCACCAGCCAG GCACAGTCGCTGCACCTGACGCCCATTGCCAACATGCTGGGCCGGCACGGCACCAGCCACATGCTGCTCGGCCTG CTCATGACGCTGCCGACGGGCGCCCTGGCGCTCAGCGACCTGACGGGCAGCATTGCACTCGACGTGGGGCGCGCC GTGGCCATTCCCGCCGACGCGGCGTGGTTTTGCCCCGGCATGATTGTGCTGGTGGACGGCGTCTACCAAGAGGAC AGCGGGCCGGTGGGCGTGGGCCTAGCGGGCAGCTCGGGCATTGGCGGGACGCTGGGCGGCACCTTTGAAGTATTT TTTCTCGGCCAGCCGCCGTGTGAGAAGCGCGCCGTGACGCTGGGCATTGGGGCGCCCGACGGGGGCATCGACCAT GTTATTGGCGGCGGCTTTGGCTGGGTTGATTTTGTCGGCGTGGGCAGCGAGCGAGCCGTGGGCGCCAAGATGGCT CGACTGCAGCAGCGCCTGTTGCCAGCGCCCTCTGACGCGCCGTCTGAGCCTCGTGCTGGCCGCAACCGCATCATT TTGGTCGGTCACGTCACCCTCGACAATGCCCGCGCCCTGGCCGCGCTGGCCAAAATACTAGCCCTCTACGCCGCC GAGCCGCCTGCCGCGCTGCCCCTGGCCTTTATCCTGACGGGCAACTTTGCCTCGCACGCCGCCCTGTCGCGCCCT AGCTCCACCAGCATCGAGTACAAGGAGAGCTTTGACGCGCTGGCCTCTGTGCTGGCCGCCTTTCCCAGCCTGCTG ACGGCGGCCACGTTTGTCCTGGTGCCGGGCGACAAGGATGCGTGGGACTCTGCCTTTGGGGCGGGTGCCGCGGTG CCGCTGCCGAGGGCGCGCGTGCCAGACTTGTTTACGTCGCGCGTGCGGCGTGCCTTTGCCGCGGCGAATGCAAAG GGGGGCAGGCAGGGTAGTGTGGCGGGCGAGGCGGTGTGCACGACGAATCCGTGTCGACTAACGCTCTTTGGGCCG AGGCATGAAGTAGTGGTTTTTTGCGACGACGTGTCTGCGCGACTGCGCCGCATGGCCATTTCCCCAGGCGGCAAA AAAAGGCACCACCACGACAACGACAACAATAACAACAACAACGACGACGACGGGGAAAAGCCACTACTAGCGCAG ACCACGCCACACGGCAAAAGCATAGACGAGCGCGACGCCCAACGCCTCGTCAAGTCTCTCCTCGACCAGGGCCAC CTCGCTCCCTTTCCACCCGCCTCCCGACCCCTTTACTGGGACTGGGCCACGGCACTGCATCTCTACCCGCTGCCC ACCGCCCTGGCCCTAGTAGACGCGTCGGCTCCCCCGTTTGTCGTGTCGTACGAGGGCTGCCACGTTATGAATCCG GGGACACTGCTCGCTCCAGGCGGTGCCGTGGCGCGCTGGGTTGAGTACGAGGTTGGCCGAGGCGCCAGGGTGCGC GAGCAGAGGCTTTGA |
| Transcript | >OphauB2|3324 ATGGACACCACGCCCGCCCCCATTTTCCGCAAAAAACGACCCCTCGCCTCCTCGTCATTGCCATCATCCTCTCCC GCCTTTGCCACGCCCGTCCACCCCCCCAAGGCATATGCCGCGCGCGCCCCCAAGGCCGCCATCCTACCCATCATC CTGCCCCCGACGACGCTGCGGCCGCTCGCCTTTCGCACCTTTACCAAGAAGCACTCGTTGACACTCACCTCGTCT GCGCTGCAGGAGCTGGCCGTCTTTGTCGGGCGGCACTGCGGCTCGGGCTGGCGGGAAGACGGGCTGGCGGAACGG GTGCTGGAAGAGGTGGCGCGGGCGTGGAAGAAGCGCAATGGCGGCGTCATTGTCGAGGGTGGGAATGTGCAGCTG GCGCAGATTCTAAAGACGATGGAGGGGAGTATGAGTGGGGGGAGGGTGGCGGGCGCGGCGAGGGCGGAGAGTATT ATGGATGGGGTGGGGGATGAGGCGAGTACGCGCATGGGGCTGAGGCCGGTGGGGATGGTGAGGGAGAAGAGTGGT GTGGGCTTTGGAGGGGGGGGGGAGCAAGGGGATGGGATGGAGGAGGAGGAGGAGGCGGGCACGGATGTGCGGGCG TGGCTCAAGGTGGTGGATGCGTTTGAGCAGCCGCGGCTCCTCTTTAACGTGCACAAGAAGCATTTTGAGAGAGAC GTGGCCAAGGCGTCCGTCTTGTCGCCGCCGAGCCACAAGACGACAGCCTTTCGCAACCGCTACCACGTAATCCAC CAGCGCCTGCAACGCAACGAAGCCCTCGACTCGCCCAGCATTTGCCGCTCGCGCAAGCGCCCCCGCACCAGCCAG GCACAGTCGCTGCACCTGACGCCCATTGCCAACATGCTGGGCCGGCACGGCACCAGCCACATGCTGCTCGGCCTG CTCATGACGCTGCCGACGGGCGCCCTGGCGCTCAGCGACCTGACGGGCAGCATTGCACTCGACGTGGGGCGCGCC GTGGCCATTCCCGCCGACGCGGCGTGGTTTTGCCCCGGCATGATTGTGCTGGTGGACGGCGTCTACCAAGAGGAC AGCGGGCCGGTGGGCGTGGGCCTAGCGGGCAGCTCGGGCATTGGCGGGACGCTGGGCGGCACCTTTGAAGTATTT TTTCTCGGCCAGCCGCCGTGTGAGAAGCGCGCCGTGACGCTGGGCATTGGGGCGCCCGACGGGGGCATCGACCAT GTTATTGGCGGCGGCTTTGGCTGGGTTGATTTTGTCGGCGTGGGCAGCGAGCGAGCCGTGGGCGCCAAGATGGCT CGACTGCAGCAGCGCCTGTTGCCAGCGCCCTCTGACGCGCCGTCTGAGCCTCGTGCTGGCCGCAACCGCATCATT TTGGTCGGTCACGTCACCCTCGACAATGCCCGCGCCCTGGCCGCGCTGGCCAAAATACTAGCCCTCTACGCCGCC GAGCCGCCTGCCGCGCTGCCCCTGGCCTTTATCCTGACGGGCAACTTTGCCTCGCACGCCGCCCTGTCGCGCCCT AGCTCCACCAGCATCGAGTACAAGGAGAGCTTTGACGCGCTGGCCTCTGTGCTGGCCGCCTTTCCCAGCCTGCTG ACGGCGGCCACGTTTGTCCTGGTGCCGGGCGACAAGGATGCGTGGGACTCTGCCTTTGGGGCGGGTGCCGCGGTG CCGCTGCCGAGGGCGCGCGTGCCAGACTTGTTTACGTCGCGCGTGCGGCGTGCCTTTGCCGCGGCGAATGCAAAG GGGGGCAGGCAGGGTAGTGTGGCGGGCGAGGCGGTGTGCACGACGAATCCGTGTCGACTAACGCTCTTTGGGCCG AGGCATGAAGTAGTGGTTTTTTGCGACGACGTGTCTGCGCGACTGCGCCGCATGGCCATTTCCCCAGGCGGCAAA AAAAGGCACCACCACGACAACGACAACAATAACAACAACAACGACGACGACGGGGAAAAGCCACTACTAGCGCAG ACCACGCCACACGGCAAAAGCATAGACGAGCGCGACGCCCAACGCCTCGTCAAGTCTCTCCTCGACCAGGGCCAC CTCGCTCCCTTTCCACCCGCCTCCCGACCCCTTTACTGGGACTGGGCCACGGCACTGCATCTCTACCCGCTGCCC ACCGCCCTGGCCCTAGTAGACGCGTCGGCTCCCCCGTTTGTCGTGTCGTACGAGGGCTGCCACGTTATGAATCCG GGGACACTGCTCGCTCCAGGCGGTGCCGTGGCGCGCTGGGTTGAGTACGAGGTTGGCCGAGGCGCCAGGGTGCGC GAGCAGAGGCTTTGA |
| Gene | >OphauB2|3324 ATGGACACCACGCCCGCCCCCATTTTCCGCAAAAAACGACCCCTCGCCTCCTCGTCATTGCCATCATCCTCTCCC GCCTTTGCCACGCCCGTCCACCCCCCCAAGGCATATGCCGCGCGCGCCCCCAAGGCCGCCATCCTACCCATCATC CTGCCCCCGACGACGCTGCGGCCGCTCGCCTTTCGCACCTTTACCAAGAAGCACTCGTTGACACTCACCTCGTCT GCGCTGCAGGAGCTGGCCGTCTTTGTCGGGCGGCACTGCGGCTCGGGCTGGCGGGAAGACGGGCTGGCGGAACGG GTGCTGGAAGAGGTGGCGCGGGCGTGGAAGAAGCGCAATGGCGGCGTCATTGTCGAGGGTGGGAATGTGCAGCTG GCGCAGATTCTAAAGACGATGGAGGGGAGTATGAGTGGGGGGAGGGTGGCGGGCGCGGCGAGGGCGGAGAGTATT ATGGATGGGGTGGGGGATGAGGCGAGTACGCGCATGGGGCTGAGGCCGGTGGGGATGGTGAGGGAGAAGAGTGGT GTGGGCTTTGGAGGGGGGGGGGAGCAAGGGGATGGGATGGAGGAGGAGGAGGAGGCGGGCACGGATGTGCGGGCG TGGCTCAAGGTGGTGGATGCGTTTGAGCAGCCGCGGCTCCTCTTTAACGTGCACAAGAAGCATTTTGAGAGGCAA GTCTATTTTTCGAGCACTCGTCTCTATTCTTGAGCACTCTTGTTTGCTAACACTTTGGCTGCATAGAGACGTGGC CAAGGCGTCCGTCTTGTCGCCGCCGAGCCACAAGACGACAGCCTTTCGCAACCGCTACCACGTAATCCACCAGCG CCTGCAACGCAACGAAGCCCTCGACTCGCCCAGCATTTGCCGCTCGCGCAAGCGCCCCCGCACCAGCCAGGCACA GTCGCTGCACCTGACGCCCATTGCCAACATGCTGGGCCGGCACGGCACCAGCCACATGCTGCTCGGCCTGCTCAT GACGCTGCCGACGGGCGCCCTGGCGCTCAGCGACCTGACGGGCAGCATTGCACTCGACGTGGGGCGCGCCGTGGC CATTCCCGCCGACGCGGCGTGGTTTTGCCCCGGCATGATTGTGCTGGTGGACGGCGTCTACCAAGAGGACAGCGG GCCGGTGGGCGTGGGCCTAGCGGGCAGCTCGGGCATTGGCGGGACGCTGGGCGGCACCTTTGAAGTATTTTTTCT CGGCCAGCCGCCGTGTGAGAAGCGCGCCGTGACGCTGGGCATTGGGGCGCCCGACGGGGGCATCGACCATGTTAT TGGCGGCGGCTTTGGCTGGGTTGATTTTGTCGGCGTGGGCAGCGAGCGAGCCGTGGGCGCCAAGATGGCTCGACT GCAGCAGCGCCTGTTGCCAGCGCCCTCTGACGCGCCGTCTGAGCCTCGTGCTGGCCGCAACCGCATCATTTTGGT CGGTCACGTCACCCTCGACAATGCCCGCGCCCTGGCCGCGCTGGCCAAAATACTAGCCCTCTACGCCGCCGAGCC GCCTGCCGCGCTGCCCCTGGCCTTTATCCTGACGGGCAACTTTGCCTCGCACGCCGCCCTGTCGCGCCCTAGCTC CACCAGCATCGAGTACAAGGAGAGCTTTGACGCGCTGGCCTCTGTGCTGGCCGCCTTTCCCAGCCTGCTGACGGC GGCCACGTTTGTCCTGGTGCCGGGCGACAAGGATGCGTGGGACTCTGCCTTTGGGGCGGGTGCCGCGGTGCCGCT GCCGAGGGCGCGCGTGCCAGACTTGTTTACGTCGCGCGTGCGGCGTGCCTTTGCCGCGGCGAATGCAAAGGGGGG CAGGCAGGGTAGTGTGGCGGGCGAGGCGGTGTGCACGACGAATCCGTGTCGACTAACGCTCTTTGGGCCGAGGCA TGAAGTAGTGGTTTTTTGCGACGACGTGTCTGCGCGACTGCGCCGCATGGCCATTTCCCCAGGCGGCAAAAAAAG GCACCACCACGACAACGACAACAATAACAACAACAACGACGACGACGGGGAAAAGCCACTACTAGCGCAGACCAC GCCACACGGCAAAAGCATAGACGAGCGCGACGCCCAACGCCTCGTCAAGTCTCTCCTCGACCAGGGCCACCTCGC TCCCTTTCCACCCGCCTCCCGACCCCTTTACTGGGACTGGGCCACGGCACTGCATCTCTACCCGCTGCCCACCGC CCTGGCCCTAGTAGACGCGTCGGCTCCCCCGTTTGTCGTGTCGTACGAGGGCTGCCACGTTATGAATCCGGGGAC ACTGCTCGCTCCAGGCGGTGCCGTGGCGCGCTGGGTTGAGTACGAGGTTGGCCGAGGCGCCAGGGTGCGCGAGCA GAGGCTTTGA |