© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3236 |
| Gene name | |
| Location | Contig_21:4877..6061 |
| Strand | + |
| Gene length (bp) | 1184 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01302 | CAP_GLY | CAP-Gly domain | 2.9E-24 | 155 | 225 |
| PF14560 | Ubiquitin_2 | Ubiquitin-like domain | 5.2E-21 | 3 | 86 |
| PF00240 | ubiquitin | Ubiquitin family | 1.8E-05 | 18 | 47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10235|ALP11_SCHPO | Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1 | 1 | 239 | 9.0E-64 |
| sp|Q9D1E6|TBCB_MOUSE | Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2 | 15 | 230 | 1.0E-32 |
| sp|Q5E951|TBCB_BOVIN | Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1 | 15 | 230 | 2.0E-32 |
| sp|Q99426|TBCB_HUMAN | Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2 | 15 | 230 | 9.0E-32 |
| sp|Q20728|TBCB_CAEEL | Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=tbcb-1 PE=1 SV=1 | 1 | 230 | 9.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10235|ALP11_SCHPO | Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1 | 1 | 239 | 9.0E-64 |
| sp|Q9D1E6|TBCB_MOUSE | Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2 | 15 | 230 | 1.0E-32 |
| sp|Q5E951|TBCB_BOVIN | Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1 | 15 | 230 | 2.0E-32 |
| sp|Q99426|TBCB_HUMAN | Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2 | 15 | 230 | 9.0E-32 |
| sp|Q20728|TBCB_CAEEL | Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=tbcb-1 PE=1 SV=1 | 1 | 230 | 9.0E-24 |
| sp|Q67Z52|TBCB_ARATH | Tubulin-folding cofactor B OS=Arabidopsis thaliana GN=TFCB PE=1 SV=1 | 1 | 240 | 3.0E-23 |
| sp|Q54Z01|TBCB_DICDI | Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb PE=3 SV=1 | 79 | 230 | 9.0E-16 |
| sp|P53904|TBCB_YEAST | Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1 | 103 | 227 | 1.0E-15 |
| sp|Q01397|DYNA_NEUCR | Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3 PE=3 SV=3 | 151 | 227 | 1.0E-13 |
| sp|Q9UDT6|CLIP2_HUMAN | CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1 | 157 | 220 | 1.0E-11 |
| sp|Q9Z0H8|CLIP2_MOUSE | CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2 | 157 | 220 | 1.0E-11 |
| sp|O55156|CLIP2_RAT | CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1 | 157 | 220 | 2.0E-11 |
| sp|Q922J3|CLIP1_MOUSE | CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1 | 149 | 219 | 2.0E-09 |
| sp|P30622|CLIP1_HUMAN | CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 | 149 | 219 | 2.0E-09 |
| sp|O42184|CLIP1_CHICK | CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 | 149 | 219 | 3.0E-09 |
| sp|Q9Z0H8|CLIP2_MOUSE | CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2 | 168 | 225 | 8.0E-09 |
| sp|Q9UDT6|CLIP2_HUMAN | CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1 | 168 | 225 | 8.0E-09 |
| sp|O55156|CLIP2_RAT | CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1 | 168 | 225 | 1.0E-08 |
| sp|Q5R686|CLIP3_PONAB | CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3 PE=2 SV=1 | 166 | 225 | 1.0E-08 |
| sp|Q96DZ5|CLIP3_HUMAN | CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3 | 166 | 225 | 1.0E-08 |
| sp|Q5U243|CLIP3_XENLA | CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis GN=clip3 PE=2 SV=1 | 166 | 242 | 2.0E-08 |
| sp|Q9NQT8|KI13B_HUMAN | Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=2 | 160 | 225 | 4.0E-08 |
| sp|B9EHT4|CLIP3_MOUSE | CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3 PE=1 SV=1 | 166 | 225 | 2.0E-07 |
| sp|Q5R686|CLIP3_PONAB | CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3 PE=2 SV=1 | 159 | 232 | 2.0E-07 |
| sp|Q96DZ5|CLIP3_HUMAN | CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3 | 159 | 232 | 2.0E-07 |
| sp|P30622|CLIP1_HUMAN | CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 | 159 | 225 | 3.0E-07 |
| sp|B9EHT4|CLIP3_MOUSE | CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3 PE=1 SV=1 | 159 | 232 | 3.0E-07 |
| sp|Q922J3|CLIP1_MOUSE | CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1 | 159 | 225 | 3.0E-07 |
| sp|Q5U243|CLIP3_XENLA | CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis GN=clip3 PE=2 SV=1 | 159 | 225 | 4.0E-07 |
| sp|O42184|CLIP1_CHICK | CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 | 159 | 225 | 4.0E-07 |
| sp|Q5U378|TBCE_DANRE | Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2 | 153 | 228 | 7.0E-07 |
| sp|Q9VJE5|CL190_DROME | Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1 | 149 | 220 | 8.0E-07 |
| sp|P33420|NIP80_YEAST | Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIP100 PE=1 SV=2 | 147 | 208 | 8.0E-07 |
| sp|Q8N3C7|CLIP4_HUMAN | CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1 | 166 | 242 | 1.0E-06 |
| sp|Q8CIV8|TBCE_MOUSE | Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1 | 153 | 229 | 1.0E-06 |
| sp|Q66HD5|CLIP4_RAT | CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus GN=Clip4 PE=1 SV=1 | 148 | 242 | 2.0E-06 |
| sp|Q8CI96|CLIP4_MOUSE | CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4 PE=1 SV=1 | 166 | 242 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3236 MADVPLQVISDNAVSERRITPSWTVGQLKAKLETVTGIPPSSQKLSLQASAGAERIPIDAADDDDIRLSSFPLVP YAELHVQDRRPPGARLNLNDTSGVDKYVMPEEEYEKKTDSVLAWKKAQKLGRFDPDAPRHEQARLEALECDVRQR GIAVDKRCRVGGDDTRRGIVRYVGEVPEIPSGKGIWVGIELDEPVGKNDGSIAGTRYWGQPGHLKHGVFVRPERI DVGDFAPMDDLEDMEEI* |
| Coding | >OphauB2|3236 ATGGCCGACGTGCCTCTGCAGGTCATCTCAGACAATGCCGTTTCGGAGCGGCGCATCACGCCGTCGTGGACTGTC GGCCAGCTCAAAGCAAAGCTCGAGACAGTGACGGGCATTCCCCCGTCGTCGCAGAAACTGAGCCTTCAGGCATCA GCAGGGGCGGAACGCATCCCCATTGACGCGGCTGACGACGACGACATCCGGCTCTCCAGTTTTCCCCTGGTGCCC TACGCCGAGCTGCATGTGCAGGACCGACGCCCACCAGGGGCTCGTCTCAATTTGAATGACACATCGGGTGTCGAC AAGTATGTGATGCCTGAGGAAGAATACGAAAAAAAAACCGACTCAGTGCTTGCGTGGAAAAAGGCTCAGAAACTG GGCCGTTTCGACCCTGATGCTCCCCGCCACGAACAGGCCAGGCTGGAGGCTCTCGAATGCGACGTGCGCCAGCGG GGCATAGCGGTGGATAAGCGGTGTCGCGTTGGCGGCGACGACACGCGCCGGGGGATCGTCAGATATGTGGGCGAA GTTCCTGAGATTCCCAGCGGCAAGGGTATCTGGGTGGGCATCGAGCTGGACGAGCCAGTCGGCAAGAATGACGGC AGCATCGCTGGCACGCGCTATTGGGGACAGCCTGGCCATCTAAAGCACGGCGTCTTTGTGCGACCAGAGCGCATC GATGTTGGCGACTTTGCTCCCATGGACGATTTGGAAGACATGGAGGAAATCTGA |
| Transcript | >OphauB2|3236 ATGGCCGACGTGCCTCTGCAGGTCATCTCAGACAATGCCGTTTCGGAGCGGCGCATCACGCCGTCGTGGACTGTC GGCCAGCTCAAAGCAAAGCTCGAGACAGTGACGGGCATTCCCCCGTCGTCGCAGAAACTGAGCCTTCAGGCATCA GCAGGGGCGGAACGCATCCCCATTGACGCGGCTGACGACGACGACATCCGGCTCTCCAGTTTTCCCCTGGTGCCC TACGCCGAGCTGCATGTGCAGGACCGACGCCCACCAGGGGCTCGTCTCAATTTGAATGACACATCGGGTGTCGAC AAGTATGTGATGCCTGAGGAAGAATACGAAAAAAAAACCGACTCAGTGCTTGCGTGGAAAAAGGCTCAGAAACTG GGCCGTTTCGACCCTGATGCTCCCCGCCACGAACAGGCCAGGCTGGAGGCTCTCGAATGCGACGTGCGCCAGCGG GGCATAGCGGTGGATAAGCGGTGTCGCGTTGGCGGCGACGACACGCGCCGGGGGATCGTCAGATATGTGGGCGAA GTTCCTGAGATTCCCAGCGGCAAGGGTATCTGGGTGGGCATCGAGCTGGACGAGCCAGTCGGCAAGAATGACGGC AGCATCGCTGGCACGCGCTATTGGGGACAGCCTGGCCATCTAAAGCACGGCGTCTTTGTGCGACCAGAGCGCATC GATGTTGGCGACTTTGCTCCCATGGACGATTTGGAAGACATGGAGGAAATCTGA |
| Gene | >OphauB2|3236 ATGGCCGACGTGCCTCTGCAGGTCATCTCAGACAATGCCGTTTCGGAGCGGCGCATCACGCCGTCGTGGACTGTC GGCCAGCTCAAAGCAAAGCTCGAGACAGTGACGGGCATTCCCCCGTCGTCGCAGAAACTGAGCCTTCAGGCATCA GCAGGGGCGGAACGCATCCCCATTGACGCGGCTGACGACGACGACATCCGGCTCTCCAGTTTTCCCCTGGTGCCC TACGCCGAGCTGCATGTAAGTCGGCCCAGCATCCTCTTGATTTGTCCAATTGATGAGACAGCATGTTGTCAAGGA TCAGGGGCAGGCCATGTCAAGCAGACGGCACCATAATTTCGCTGTGCTTCTTCAGCCTTTTTTTTTTTTTTTTTT TTTTTTAATATTCTCTACTTGCAACTTTTTGATTTCTTTGTCCCCTCCCCCCACCCTCAATGTCGCATGTGACAA ATTTGTCTCATCACGACAAACCAGCGCATGAACTCGCCTCCGCCTTGGCCAAAGCTTGGCGGATGCTGCCGGTTT CCGGTTCGCGTCTGGGCCCCCAGTTACTTTCTTTTTTTCTTTTTCTTCTCCCCCATCTGACCGTGGTTTGCCTTG CTCTTGCTCCCTGCCTGTAATTGTTGCGTGTTTTGCCATGGTCCTAGTTTAGCAACGGCTCGACAAAGACTGACC CGGTCCTGGTTGTGCGGCAGGTGCAGGACCGACGCCCACCAGGGGCTCGTCTCAATTTGAATGACACATCGGGTG TCGACAAGTATGTGATGCCTGAGGAAGAATACGAAAAAAAAACCGACTCAGTGCTTGCGTGGAAAAAGGCTCAGA AACTGGGCCGTTTCGACCCTGATGCTCCCCGCCACGAACAGGCCAGGCTGGAGGCTCTCGAATGCGACGTGCGCC AGCGGGGCATAGCGGTGGATAAGCGGTGTCGCGTTGGCGGCGACGACACGCGCCGGGGGATCGTCAGATATGTGG GCGAAGTTCCTGAGATTCCCAGCGGCAAGGGTATCTGGGTGGGCATCGAGCTGGACGAGCCAGTCGGCAAGAATG ACGGCAGCATCGCTGGCACGCGCTATTGGGGACAGCCTGGCCATCTAAAGCACGGCGTCTTTGTGCGACCAGAGC GCATCGATGTTGGCGACTTTGCTCCCATGGACGATTTGGAAGACATGGAGGAAATCTGA |