Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|3229
Gene name
Location	Contig_209:4252..5122
Strand	+
Gene length (bp)	870
Transcript length (bp)	816
Coding sequence length (bp)	816
Protein length (aa)	272

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08551	DUF1751	Eukaryotic integral membrane protein (DUF1751)	6.6E-05	46	106

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UTK7\|DSC2_SCHPO	DSC E3 ubiquitin ligase complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc2 PE=1 SV=1	4	212	1.0E-23
sp\|Q8RXQ2\|RBL18_ARATH	Rhomboid-like protein 18 OS=Arabidopsis thaliana GN=RBL18 PE=2 SV=1	3	214	3.0E-12
sp\|Q9LET3\|RBL20_ARATH	Rhomboid-like protein 20 OS=Arabidopsis thaliana GN=RBL20 PE=2 SV=1	39	194	6.0E-11
sp\|Q08232\|YO073_YEAST	Uncharacterized membrane protein YOL073C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL073C PE=1 SV=1	3	144	2.0E-10
sp\|Q8R1K1\|UBAC2_MOUSE	Ubiquitin-associated domain-containing protein 2 OS=Mus musculus GN=Ubac2 PE=1 SV=1	33	171	7.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UTK7\|DSC2_SCHPO	DSC E3 ubiquitin ligase complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc2 PE=1 SV=1	4	212	1.0E-23
sp\|Q8RXQ2\|RBL18_ARATH	Rhomboid-like protein 18 OS=Arabidopsis thaliana GN=RBL18 PE=2 SV=1	3	214	3.0E-12
sp\|Q9LET3\|RBL20_ARATH	Rhomboid-like protein 20 OS=Arabidopsis thaliana GN=RBL20 PE=2 SV=1	39	194	6.0E-11
sp\|Q08232\|YO073_YEAST	Uncharacterized membrane protein YOL073C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL073C PE=1 SV=1	3	144	2.0E-10
sp\|Q8R1K1\|UBAC2_MOUSE	Ubiquitin-associated domain-containing protein 2 OS=Mus musculus GN=Ubac2 PE=1 SV=1	33	171	7.0E-10
sp\|Q5ZJQ8\|UBAC2_CHICK	Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus GN=UBAC2 PE=2 SV=1	5	211	1.0E-08
sp\|Q8NBM4\|UBAC2_HUMAN	Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens GN=UBAC2 PE=1 SV=1	45	211	1.0E-08
sp\|Q4R910\|UBAC2_MACFA	Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis GN=UBAC2 PE=2 SV=1	45	211	2.0E-08

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GO

GO Term	Description	Terminal node
GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Yes
GO:0016021	integral component of membrane	Yes
GO:0110165	cellular anatomical entity	No
GO:0016192	vesicle-mediated transport	No
GO:0051179	localization	No
GO:0008150	biological_process	No
GO:0031224	intrinsic component of membrane	No
GO:0051234	establishment of localization	No
GO:0048193	Golgi vesicle transport	No
GO:0005575	cellular_component	No
GO:0006810	transport	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	13	35	22
2	50	72	22
3	84	106	22
4	116	135	19
5	166	188	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|3229 MTFTNAPVSRLAVLGLVSASIAASMLDMKHYFYIIIDTHIWRYRQFWRLLVYQLCCTNSVEAFFAAMTLYNLRSI ERLWGPRKYASFLAVSSVLTAVIPPFIMTILRPLSASLFNYMPAGPTPLIFAALAQFYAMVPHMYKYRIATSPLD EPFSGMTFSDKSYQYLIALHLALLQWPGSVVGAAVGWIVGHAWRGGVFPTSLVAWRVPAWMVGMSANKRSAEFEG LRRRLESDNGASAVSSALQSHGPGSQRSDRRRTMGQQIVDQFREAL*
Coding	>OphauB2\|3229 ATGACATTCACCAATGCGCCCGTCAGCCGTTTGGCCGTTTTGGGCCTCGTTTCAGCCTCGATTGCCGCCAGCATG CTCGACATGAAGCATTACTTTTACATCATTATTGACACCCACATATGGCGCTACCGTCAATTCTGGAGGCTGCTG GTGTACCAGCTCTGCTGCACAAACTCTGTGGAAGCTTTTTTTGCCGCAATGACGCTCTACAATCTGAGGAGCATT GAGCGGCTCTGGGGTCCTCGCAAATACGCGTCCTTTCTTGCCGTGTCTTCGGTCCTCACGGCCGTAATTCCTCCC TTTATCATGACTATTCTCCGGCCACTGTCGGCGTCTCTCTTCAACTACATGCCCGCGGGGCCGACGCCTCTGATA TTCGCTGCACTGGCCCAATTCTACGCCATGGTGCCGCACATGTACAAGTACCGCATCGCCACGTCGCCCCTTGAC GAGCCCTTTTCGGGCATGACCTTTTCGGACAAGTCGTATCAGTACCTCATTGCGCTGCATCTGGCGCTGCTGCAG TGGCCTGGCTCTGTTGTCGGGGCGGCGGTTGGCTGGATCGTGGGTCATGCCTGGCGCGGCGGTGTCTTCCCGACG TCGCTTGTTGCCTGGCGGGTGCCGGCATGGATGGTGGGAATGAGTGCCAATAAGCGAAGTGCCGAATTTGAAGGC TTGCGGCGGAGGCTCGAGAGCGATAATGGGGCTTCAGCCGTGTCGTCAGCGTTGCAGAGTCACGGCCCAGGGTCG CAGAGGTCGGACAGAAGACGCACCATGGGGCAGCAGATTGTGGATCAGTTCCGGGAGGCGCTGTAG
Transcript	>OphauB2\|3229 ATGACATTCACCAATGCGCCCGTCAGCCGTTTGGCCGTTTTGGGCCTCGTTTCAGCCTCGATTGCCGCCAGCATG CTCGACATGAAGCATTACTTTTACATCATTATTGACACCCACATATGGCGCTACCGTCAATTCTGGAGGCTGCTG GTGTACCAGCTCTGCTGCACAAACTCTGTGGAAGCTTTTTTTGCCGCAATGACGCTCTACAATCTGAGGAGCATT GAGCGGCTCTGGGGTCCTCGCAAATACGCGTCCTTTCTTGCCGTGTCTTCGGTCCTCACGGCCGTAATTCCTCCC TTTATCATGACTATTCTCCGGCCACTGTCGGCGTCTCTCTTCAACTACATGCCCGCGGGGCCGACGCCTCTGATA TTCGCTGCACTGGCCCAATTCTACGCCATGGTGCCGCACATGTACAAGTACCGCATCGCCACGTCGCCCCTTGAC GAGCCCTTTTCGGGCATGACCTTTTCGGACAAGTCGTATCAGTACCTCATTGCGCTGCATCTGGCGCTGCTGCAG TGGCCTGGCTCTGTTGTCGGGGCGGCGGTTGGCTGGATCGTGGGTCATGCCTGGCGCGGCGGTGTCTTCCCGACG TCGCTTGTTGCCTGGCGGGTGCCGGCATGGATGGTGGGAATGAGTGCCAATAAGCGAAGTGCCGAATTTGAAGGC TTGCGGCGGAGGCTCGAGAGCGATAATGGGGCTTCAGCCGTGTCGTCAGCGTTGCAGAGTCACGGCCCAGGGTCG CAGAGGTCGGACAGAAGACGCACCATGGGGCAGCAGATTGTGGATCAGTTCCGGGAGGCGCTGTAG
Gene	>OphauB2\|3229 ATGACATTCACCAATGCGCCCGTCAGCCGTTTGGCCGTTTTGGGCCTCGTTTCAGCCTCGATTGCCGCCAGCATG CTCGACATGAAGCATTACTTTTACATCATTATTGACACCCACATATGGCGCTACCGTCAATTCTGGAGGCTGCTG GTGTACCAGCTCTGCTGCACAAACTCTGTGGAAGCTTTTTTTGCCGCAATGACGCTCTACAATCTGAGGAGCATT GAGCGGCTCTGGGGTCCTCGCAAATACGCGGTATGCCTGGTGGCCTGTTGCTTGATGGCGTATTGGCACTGCTAA CCGTGTCAGTCCTTTCTTGCCGTGTCTTCGGTCCTCACGGCCGTAATTCCTCCCTTTATCATGACTATTCTCCGG CCACTGTCGGCGTCTCTCTTCAACTACATGCCCGCGGGGCCGACGCCTCTGATATTCGCTGCACTGGCCCAATTC TACGCCATGGTGCCGCACATGTACAAGTACCGCATCGCCACGTCGCCCCTTGACGAGCCCTTTTCGGGCATGACC TTTTCGGACAAGTCGTATCAGTACCTCATTGCGCTGCATCTGGCGCTGCTGCAGTGGCCTGGCTCTGTTGTCGGG GCGGCGGTTGGCTGGATCGTGGGTCATGCCTGGCGCGGCGGTGTCTTCCCGACGTCGCTTGTTGCCTGGCGGGTG CCGGCATGGATGGTGGGAATGAGTGCCAATAAGCGAAGTGCCGAATTTGAAGGCTTGCGGCGGAGGCTCGAGAGC GATAATGGGGCTTCAGCCGTGTCGTCAGCGTTGCAGAGTCACGGCCCAGGGTCGCAGAGGTCGGACAGAAGACGC ACCATGGGGCAGCAGATTGTGGATCAGTTCCGGGAGGCGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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