Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3217
Gene name
LocationContig_208:2732..4103
Strand+
Gene length (bp)1371
Transcript length (bp)1371
Coding sequence length (bp)1371
Protein length (aa) 457

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17146 PIN_6 PIN domain of ribonuclease 3.2E-29 13 104
PF08772 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like 2.6E-29 306 376

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1 7 456 2.0E-84
sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1 10 456 2.0E-51
sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1 9 430 1.0E-35
sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1 9 430 2.0E-32
sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1 9 456 1.0E-31
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1 7 456 2.0E-84
sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1 10 456 2.0E-51
sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1 9 430 1.0E-35
sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1 9 430 2.0E-32
sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1 9 456 1.0E-31
sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1 9 456 6.0E-31
sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1 244 430 3.0E-20
sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1 244 430 2.0E-19
sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1 9 125 2.0E-11
sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1 9 177 2.0E-11
sp|Q9UZ20|NOB1_PYRAB Endoribonuclease Nob1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nob1 PE=3 SV=1 38 116 9.0E-08
sp|O58440|NOB1_PYRHO Endoribonuclease Nob1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=nob1 PE=1 SV=1 38 116 4.0E-07
sp|P57674|VAPC1_THEAC Ribonuclease VapC1 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vapC1 PE=3 SV=1 37 118 1.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3217
MAAQESSRPIHSLVLDTGPLILNDPPASALMAQAERLYAPQSVLDEIRDKAARSRVETTLLPFITIRSPGKESMR
FVHDFARRTGDLHVLSRTDVEVLALAYELECERNGGDWRLRKTPGQERINGPPPGQADACKRPEHEPGADAGLAA
AQATQDVETRAQHGVSELQDGMLNLDLDQESHTAAPGAASAEDGGEADSTAGAPADKTTEAAPESPAASAHPADG
PDKETFDHDGATSDSDSDGWITPSNLKKQQAKDSAPSTGAGSARHAAQTSLQAAVLTSDYAMQNVALRINLNLVA
PSLKRITHLRTWVLRCHGCFAISRDLTKQFCPSCGQPTLLRTSCSTDAQGRVSVHLKKHFEYNKRGNVYSVPKPV
CGSANGRLPRGGGGKNAWGQGLILAEDQKEYTRAEEERRRVRARDIMDRDYLPGLMGGDRLGHGERIRVGAGRNV
NSRRKR*
Coding >OphauB2|3217
ATGGCTGCTCAAGAGAGCTCCAGGCCCATCCACAGCCTCGTGCTCGACACTGGCCCCCTGATTCTAAACGACCCC
CCAGCCAGCGCCCTCATGGCCCAGGCCGAGCGCCTCTACGCCCCCCAGTCTGTACTCGACGAGATTCGCGACAAG
GCGGCCCGCTCACGTGTAGAAACGACGCTGCTCCCCTTCATCACCATTCGCTCACCCGGCAAAGAGAGCATGCGC
TTCGTGCACGACTTTGCCCGCCGAACGGGCGACTTGCACGTCCTCAGCCGCACTGATGTCGAGGTGCTGGCGCTG
GCATACGAGCTTGAATGCGAGCGCAACGGCGGCGACTGGCGGCTGCGCAAAACACCGGGCCAAGAGCGAATCAAT
GGCCCGCCGCCGGGACAGGCAGACGCCTGCAAGCGACCAGAGCACGAACCGGGTGCAGACGCTGGCCTGGCAGCA
GCACAGGCAACCCAAGACGTGGAGACGCGGGCCCAGCACGGCGTGTCTGAGCTACAAGATGGAATGCTCAACTTG
GACCTGGATCAAGAAAGCCACACAGCAGCACCCGGGGCGGCAAGTGCCGAAGACGGTGGCGAGGCAGACTCAACT
GCCGGCGCACCAGCCGACAAGACTACCGAAGCGGCGCCCGAGTCGCCGGCCGCCAGTGCCCACCCCGCGGACGGA
CCGGACAAGGAAACATTTGACCACGACGGCGCCACCTCGGACTCGGACTCTGACGGCTGGATCACGCCCTCGAAT
CTCAAGAAGCAGCAGGCCAAGGACTCGGCCCCGAGCACCGGCGCCGGCAGCGCCCGCCATGCCGCGCAAACAAGC
CTCCAAGCCGCAGTGCTCACAAGCGACTACGCCATGCAAAACGTTGCCCTGCGCATCAACCTCAACCTCGTCGCC
CCCAGCTTGAAGCGCATCACCCACCTCCGCACCTGGGTCCTGCGCTGCCACGGCTGCTTCGCCATTTCGCGCGAC
CTGACCAAGCAATTCTGCCCGTCGTGCGGCCAGCCCACCCTCTTGCGCACCAGCTGCTCCACCGACGCGCAGGGC
AGGGTAAGCGTGCACCTCAAGAAGCACTTTGAATACAATAAGCGCGGCAACGTGTACAGCGTGCCCAAGCCCGTG
TGCGGCTCGGCAAACGGACGGCTGCCGCGCGGTGGCGGCGGCAAGAATGCTTGGGGCCAGGGACTCATTCTAGCA
GAGGACCAAAAGGAGTATACGCGTGCAGAGGAGGAGCGGCGGCGGGTGCGCGCGAGGGACATTATGGATAGGGAT
TACCTGCCGGGCTTGATGGGCGGGGATAGACTGGGCCATGGGGAGAGGATTCGAGTCGGTGCGGGCCGTAATGTG
AATTCACGACGAAAACGATGA
Transcript >OphauB2|3217
ATGGCTGCTCAAGAGAGCTCCAGGCCCATCCACAGCCTCGTGCTCGACACTGGCCCCCTGATTCTAAACGACCCC
CCAGCCAGCGCCCTCATGGCCCAGGCCGAGCGCCTCTACGCCCCCCAGTCTGTACTCGACGAGATTCGCGACAAG
GCGGCCCGCTCACGTGTAGAAACGACGCTGCTCCCCTTCATCACCATTCGCTCACCCGGCAAAGAGAGCATGCGC
TTCGTGCACGACTTTGCCCGCCGAACGGGCGACTTGCACGTCCTCAGCCGCACTGATGTCGAGGTGCTGGCGCTG
GCATACGAGCTTGAATGCGAGCGCAACGGCGGCGACTGGCGGCTGCGCAAAACACCGGGCCAAGAGCGAATCAAT
GGCCCGCCGCCGGGACAGGCAGACGCCTGCAAGCGACCAGAGCACGAACCGGGTGCAGACGCTGGCCTGGCAGCA
GCACAGGCAACCCAAGACGTGGAGACGCGGGCCCAGCACGGCGTGTCTGAGCTACAAGATGGAATGCTCAACTTG
GACCTGGATCAAGAAAGCCACACAGCAGCACCCGGGGCGGCAAGTGCCGAAGACGGTGGCGAGGCAGACTCAACT
GCCGGCGCACCAGCCGACAAGACTACCGAAGCGGCGCCCGAGTCGCCGGCCGCCAGTGCCCACCCCGCGGACGGA
CCGGACAAGGAAACATTTGACCACGACGGCGCCACCTCGGACTCGGACTCTGACGGCTGGATCACGCCCTCGAAT
CTCAAGAAGCAGCAGGCCAAGGACTCGGCCCCGAGCACCGGCGCCGGCAGCGCCCGCCATGCCGCGCAAACAAGC
CTCCAAGCCGCAGTGCTCACAAGCGACTACGCCATGCAAAACGTTGCCCTGCGCATCAACCTCAACCTCGTCGCC
CCCAGCTTGAAGCGCATCACCCACCTCCGCACCTGGGTCCTGCGCTGCCACGGCTGCTTCGCCATTTCGCGCGAC
CTGACCAAGCAATTCTGCCCGTCGTGCGGCCAGCCCACCCTCTTGCGCACCAGCTGCTCCACCGACGCGCAGGGC
AGGGTAAGCGTGCACCTCAAGAAGCACTTTGAATACAATAAGCGCGGCAACGTGTACAGCGTGCCCAAGCCCGTG
TGCGGCTCGGCAAACGGACGGCTGCCGCGCGGTGGCGGCGGCAAGAATGCTTGGGGCCAGGGACTCATTCTAGCA
GAGGACCAAAAGGAGTATACGCGTGCAGAGGAGGAGCGGCGGCGGGTGCGCGCGAGGGACATTATGGATAGGGAT
TACCTGCCGGGCTTGATGGGCGGGGATAGACTGGGCCATGGGGAGAGGATTCGAGTCGGTGCGGGCCGTAATGTG
AATTCACGACGAAAACGATGA
Gene >OphauB2|3217
ATGGCTGCTCAAGAGAGCTCCAGGCCCATCCACAGCCTCGTGCTCGACACTGGCCCCCTGATTCTAAACGACCCC
CCAGCCAGCGCCCTCATGGCCCAGGCCGAGCGCCTCTACGCCCCCCAGTCTGTACTCGACGAGATTCGCGACAAG
GCGGCCCGCTCACGTGTAGAAACGACGCTGCTCCCCTTCATCACCATTCGCTCACCCGGCAAAGAGAGCATGCGC
TTCGTGCACGACTTTGCCCGCCGAACGGGCGACTTGCACGTCCTCAGCCGCACTGATGTCGAGGTGCTGGCGCTG
GCATACGAGCTTGAATGCGAGCGCAACGGCGGCGACTGGCGGCTGCGCAAAACACCGGGCCAAGAGCGAATCAAT
GGCCCGCCGCCGGGACAGGCAGACGCCTGCAAGCGACCAGAGCACGAACCGGGTGCAGACGCTGGCCTGGCAGCA
GCACAGGCAACCCAAGACGTGGAGACGCGGGCCCAGCACGGCGTGTCTGAGCTACAAGATGGAATGCTCAACTTG
GACCTGGATCAAGAAAGCCACACAGCAGCACCCGGGGCGGCAAGTGCCGAAGACGGTGGCGAGGCAGACTCAACT
GCCGGCGCACCAGCCGACAAGACTACCGAAGCGGCGCCCGAGTCGCCGGCCGCCAGTGCCCACCCCGCGGACGGA
CCGGACAAGGAAACATTTGACCACGACGGCGCCACCTCGGACTCGGACTCTGACGGCTGGATCACGCCCTCGAAT
CTCAAGAAGCAGCAGGCCAAGGACTCGGCCCCGAGCACCGGCGCCGGCAGCGCCCGCCATGCCGCGCAAACAAGC
CTCCAAGCCGCAGTGCTCACAAGCGACTACGCCATGCAAAACGTTGCCCTGCGCATCAACCTCAACCTCGTCGCC
CCCAGCTTGAAGCGCATCACCCACCTCCGCACCTGGGTCCTGCGCTGCCACGGCTGCTTCGCCATTTCGCGCGAC
CTGACCAAGCAATTCTGCCCGTCGTGCGGCCAGCCCACCCTCTTGCGCACCAGCTGCTCCACCGACGCGCAGGGC
AGGGTAAGCGTGCACCTCAAGAAGCACTTTGAATACAATAAGCGCGGCAACGTGTACAGCGTGCCCAAGCCCGTG
TGCGGCTCGGCAAACGGACGGCTGCCGCGCGGTGGCGGCGGCAAGAATGCTTGGGGCCAGGGACTCATTCTAGCA
GAGGACCAAAAGGAGTATACGCGTGCAGAGGAGGAGCGGCGGCGGGTGCGCGCGAGGGACATTATGGATAGGGAT
TACCTGCCGGGCTTGATGGGCGGGGATAGACTGGGCCATGGGGAGAGGATTCGAGTCGGTGCGGGCCGTAATGTG
AATTCACGACGAAAACGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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