© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|3100 |
| Gene name | |
| Location | Contig_20:136522..137896 |
| Strand | + |
| Gene length (bp) | 1374 |
| Transcript length (bp) | 1305 |
| Coding sequence length (bp) | 1305 |
| Protein length (aa) | 435 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 6.6E-17 | 142 | 366 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 109 | 128 | 19 |
| 2 | 133 | 155 | 22 |
| 3 | 263 | 285 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3100 MEKYIVFHRDLTPADAAVLKSLYSDMEPPRNNLVGDTDSRIGSEKDGTLLMDKASNQSSTKFLTDDKLTPTVLLS VDDYSDRVPRGISKLVIEPFVRWAQRVARHDTDVVMIIHLILYFGTSVPSSFLLYQNFSYAHGVAHLVMQIYYIG TYTLMMHQHIHQRGILSKKYGWFDKLFPYILDPLMGHTWNTYYYHHVKHHHVEGNGPDDLSSTIRYQRDSIGDFL RYVGRFFALVWIDLPLYFLRKHRPGLAMRAAGWELLTYLFYYTMATRAGAGATLFVYILPFVLLRLGLMVGNWGQ HAFVDIDEPTSDFRSSITLIDVASNRFCFNDGYHTSHHLNPLRHWRDHPKSFLEQKHIYAREGALVFHNIDFLMI TYRLLRKDYSHLAKCLVPLGHQRELTLEDRTELLQRLTRKMDEKRILDKFGKGKRTGDS* |
| Coding | >OphauB2|3100 ATGGAAAAGTACATTGTTTTCCATCGTGATCTGACTCCTGCCGACGCTGCTGTCCTCAAAAGTCTCTACAGCGAC ATGGAGCCGCCCAGAAATAATCTGGTTGGTGACACAGATTCTAGAATCGGCTCCGAGAAGGACGGGACTCTACTC ATGGACAAAGCATCGAATCAAAGCTCCACGAAATTTCTTACAGACGACAAACTCACGCCAACTGTTCTACTCTCA GTAGACGATTATTCTGACCGAGTTCCCCGCGGAATCAGCAAATTGGTGATTGAGCCTTTTGTCCGCTGGGCTCAA CGAGTAGCACGTCATGATACCGACGTGGTCATGATTATACATCTGATACTTTATTTCGGCACCTCTGTTCCCAGC TCGTTTCTTCTATATCAAAACTTCAGTTATGCACACGGTGTTGCTCATTTGGTCATGCAAATTTACTATATTGGA ACTTACACATTGATGATGCATCAACACATTCACCAACGAGGAATTTTGAGTAAGAAGTATGGCTGGTTTGACAAG CTGTTTCCTTATATTCTAGATCCCTTGATGGGCCACACGTGGAACACATACTATTACCACCACGTTAAACACCAC CATGTGGAAGGCAACGGGCCTGACGACTTGTCGTCGACGATCCGATATCAGCGAGACAGCATTGGAGACTTTTTA AGATATGTGGGCCGTTTCTTTGCCCTCGTCTGGATCGATCTGCCTTTGTATTTTCTGCGTAAGCATCGACCTGGC CTGGCGATGCGTGCAGCAGGATGGGAGCTTCTGACCTATCTTTTTTATTATACCATGGCGACAAGAGCAGGCGCA GGGGCGACACTGTTTGTGTACATATTGCCTTTTGTACTGCTGAGGCTGGGTCTCATGGTTGGCAATTGGGGTCAA CATGCCTTTGTGGATATAGATGAGCCCACATCTGACTTTCGATCGAGCATCACTCTGATTGATGTCGCGAGTAAT CGCTTCTGTTTCAACGACGGGTACCATACATCACATCACCTCAATCCACTACGACACTGGCGCGACCATCCAAAA TCCTTTCTGGAGCAGAAGCATATCTATGCTCGGGAGGGAGCCCTCGTGTTTCACAACATTGACTTCCTCATGATC ACGTACCGTTTGCTGCGCAAGGACTATAGCCACTTGGCCAAATGCCTTGTGCCCCTGGGCCACCAGAGGGAGCTT ACCCTGGAGGATCGGACTGAGCTGCTGCAGAGACTGACGAGGAAGATGGATGAGAAGAGAATTCTGGACAAGTTT GGCAAAGGAAAAAGGACTGGCGATTCTTGA |
| Transcript | >OphauB2|3100 ATGGAAAAGTACATTGTTTTCCATCGTGATCTGACTCCTGCCGACGCTGCTGTCCTCAAAAGTCTCTACAGCGAC ATGGAGCCGCCCAGAAATAATCTGGTTGGTGACACAGATTCTAGAATCGGCTCCGAGAAGGACGGGACTCTACTC ATGGACAAAGCATCGAATCAAAGCTCCACGAAATTTCTTACAGACGACAAACTCACGCCAACTGTTCTACTCTCA GTAGACGATTATTCTGACCGAGTTCCCCGCGGAATCAGCAAATTGGTGATTGAGCCTTTTGTCCGCTGGGCTCAA CGAGTAGCACGTCATGATACCGACGTGGTCATGATTATACATCTGATACTTTATTTCGGCACCTCTGTTCCCAGC TCGTTTCTTCTATATCAAAACTTCAGTTATGCACACGGTGTTGCTCATTTGGTCATGCAAATTTACTATATTGGA ACTTACACATTGATGATGCATCAACACATTCACCAACGAGGAATTTTGAGTAAGAAGTATGGCTGGTTTGACAAG CTGTTTCCTTATATTCTAGATCCCTTGATGGGCCACACGTGGAACACATACTATTACCACCACGTTAAACACCAC CATGTGGAAGGCAACGGGCCTGACGACTTGTCGTCGACGATCCGATATCAGCGAGACAGCATTGGAGACTTTTTA AGATATGTGGGCCGTTTCTTTGCCCTCGTCTGGATCGATCTGCCTTTGTATTTTCTGCGTAAGCATCGACCTGGC CTGGCGATGCGTGCAGCAGGATGGGAGCTTCTGACCTATCTTTTTTATTATACCATGGCGACAAGAGCAGGCGCA GGGGCGACACTGTTTGTGTACATATTGCCTTTTGTACTGCTGAGGCTGGGTCTCATGGTTGGCAATTGGGGTCAA CATGCCTTTGTGGATATAGATGAGCCCACATCTGACTTTCGATCGAGCATCACTCTGATTGATGTCGCGAGTAAT CGCTTCTGTTTCAACGACGGGTACCATACATCACATCACCTCAATCCACTACGACACTGGCGCGACCATCCAAAA TCCTTTCTGGAGCAGAAGCATATCTATGCTCGGGAGGGAGCCCTCGTGTTTCACAACATTGACTTCCTCATGATC ACGTACCGTTTGCTGCGCAAGGACTATAGCCACTTGGCCAAATGCCTTGTGCCCCTGGGCCACCAGAGGGAGCTT ACCCTGGAGGATCGGACTGAGCTGCTGCAGAGACTGACGAGGAAGATGGATGAGAAGAGAATTCTGGACAAGTTT GGCAAAGGAAAAAGGACTGGCGATTCTTGA |
| Gene | >OphauB2|3100 ATGGAAAAGTACATTGTTTTCCATCGTGATCTGACTCCTGCCGACGCTGCTGTCCTCAAAAGTCTCTACAGCGAC ATGGAGCCGCCCAGAAATAATCTGGTTGGTGACACAGATTCTAGAATCGGCTCCGAGAAGGACGGGACTCTACTC ATGGACAAAGCATCGAATCAAAGCTCCACGAAATTTCTTACAGACGACAAACTCACGCCAACTGTTCTACTCTCA GTAGACGATTATTCTGACCGAGTTCCCCGCGGAATCAGCAAATTGGTGATTGAGCCTTTTGTCCGCTGGGCTCAA CGAGTAGCACGTCATGATACCGACGTGGTCATGATTATACATCTGATACTTTATTTCGGCACCTCTGTTCCCAGC TCGTTTCTTCTATATCAAAACTTCAGTTATGCACACGGTGTTGCTCATTTGGTCATGCAAATTTACTATATTGGA ACTTACACATTGATGATGCATCAACACATTCACCAACGAGGAATTTTGAGTAAGAAGTATGGCTGGTTTGACAAG CTGTTTCCTTATATTCTAGATCCCTTGATGGGCCACACGTGGAACACATACTATTACCACCACGTTAAACACCAC CATGTGGAAGGCAACGGGCCTGACGACTTGTCGTCGACGATCCGATATCAGCGAGACAGCATTGGAGACTTTTTA AGATATGTGGGCCGTTTCTTTGCCCTCGTCTGGATCGATCTGCCTTTGTATTTTCTGCGTAAGCATCGACCTGGC CTGGCGATGCGTGCAGCAGGATGGGAGCTTCTGACCTATCTTTTTTATTATACCATGGCGACAAGAGCAGGCGCA GGGGCGACACTGTTTGTGTACATATTGCCTTTTGTACTGCTGAGGCTGGGTCTCATGGTTGGCAATTGGGGTCAA CATGCCTTTGTGGATATAGATGAGCCCACATCTGACTTTCGATCGAGCATCACTCTGATTGATGTCGCGGTAAGT ACAGGGTTGTGTCTGCAATTCTATAGAGTGCCGCACAAAGCAAAGAGCTGACGAACGGGACAGAGTAATCGCTTC TGTTTCAACGACGGGTACCATACATCACATCACCTCAATCCACTACGACACTGGCGCGACCATCCAAAATCCTTT CTGGAGCAGAAGCATATCTATGCTCGGGAGGGAGCCCTCGTGTTTCACAACATTGACTTCCTCATGATCACGTAC CGTTTGCTGCGCAAGGACTATAGCCACTTGGCCAAATGCCTTGTGCCCCTGGGCCACCAGAGGGAGCTTACCCTG GAGGATCGGACTGAGCTGCTGCAGAGACTGACGAGGAAGATGGATGAGAAGAGAATTCTGGACAAGTTTGGCAAA GGAAAAAGGACTGGCGATTCTTGA |