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| Protein ID | OphauB2|3086 |
| Gene name | |
| Location | Contig_20:112238..112643 |
| Strand | + |
| Gene length (bp) | 405 |
| Transcript length (bp) | 333 |
| Coding sequence length (bp) | 333 |
| Protein length (aa) | 111 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01096 | TFIIS_C | Transcription factor S-II (TFIIS) | 6.4E-20 | 68 | 108 |
| PF02150 | RNA_POL_M_15KD | RNA polymerases M/15 Kd subunit | 1.5E-06 | 4 | 33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04307|RPC10_YEAST | DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1 SV=1 | 1 | 110 | 4.0E-34 |
| sp|O13896|RPC10_SCHPO | DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc11 PE=3 SV=1 | 2 | 110 | 4.0E-30 |
| sp|Q9Y2Y1|RPC10_HUMAN | DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2 | 1 | 109 | 8.0E-30 |
| sp|Q9CQZ7|RPC10_MOUSE | DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 | 1 | 109 | 2.0E-29 |
| sp|Q2M2S7|RPC10_BOVIN | DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1 | 1 | 109 | 2.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04307|RPC10_YEAST | DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1 SV=1 | 1 | 110 | 4.0E-34 |
| sp|O13896|RPC10_SCHPO | DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc11 PE=3 SV=1 | 2 | 110 | 4.0E-30 |
| sp|Q9Y2Y1|RPC10_HUMAN | DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2 | 1 | 109 | 8.0E-30 |
| sp|Q9CQZ7|RPC10_MOUSE | DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 | 1 | 109 | 2.0E-29 |
| sp|Q2M2S7|RPC10_BOVIN | DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus GN=POLR3K PE=3 SV=1 | 1 | 109 | 2.0E-27 |
| sp|Q58548|TFS_METJA | Transcription factor S OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=tfs PE=3 SV=1 | 1 | 109 | 6.0E-13 |
| sp|Q9P9I8|TFS_METTL | Transcription factor S OS=Methanothermococcus thermolithotrophicus GN=tfs PE=3 SV=1 | 1 | 109 | 1.0E-12 |
| sp|Q56254|TFS_THECE | Transcription factor S OS=Thermococcus celer GN=tfs PE=1 SV=1 | 2 | 108 | 7.0E-10 |
| sp|Q07271|TFS_SULAC | Transcription factor S OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=tfs PE=3 SV=2 | 2 | 109 | 5.0E-09 |
| sp|O29033|TFS_ARCFU | Transcription factor S OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tfs PE=3 SV=1 | 4 | 109 | 5.0E-08 |
| sp|O27369|TFS_METTH | Transcription factor S OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=tfs PE=3 SV=2 | 2 | 109 | 3.0E-07 |
| sp|Q6FS48|RPB9_CANGA | DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPB9 PE=3 SV=1 | 4 | 105 | 4.0E-07 |
| sp|O94703|RPA12_SCHPO | DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1 | 2 | 110 | 5.0E-07 |
| sp|P49373|TFS2_SCHPO | Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1 | 49 | 108 | 7.0E-07 |
| sp|P27999|RPB9_YEAST | DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1 SV=1 | 4 | 105 | 8.0E-07 |
| sp|P07273|TFS2_YEAST | Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 | 38 | 108 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0043167 | ion binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009987 | cellular process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Transcription factor TFIIS |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|3086 MLLFCPSCANILTVSLTAQRTNRLECRTCPFEHTITEPVFSRRVFERKEKEDVFGGPGAWDNAQKGRAQCPAHGC DGDEAAFFQVQIRSADEPMTSFFKCMACGHRWREN* |
| Coding | >OphauB2|3086 ATGCTCCTGTTCTGCCCCTCTTGCGCCAACATTTTGACGGTATCGCTCACGGCCCAACGCACCAACCGTCTCGAG TGTCGCACCTGTCCCTTTGAGCACACCATCACCGAGCCCGTCTTTTCACGACGCGTCTTTGAGCGCAAGGAAAAG GAAGACGTCTTTGGCGGGCCGGGCGCCTGGGACAATGCGCAAAAGGGTCGCGCCCAGTGTCCTGCCCATGGCTGC GACGGCGACGAGGCTGCCTTTTTCCAAGTGCAGATTCGCAGTGCCGACGAGCCCATGACGAGCTTCTTCAAGTGC ATGGCGTGTGGTCACCGCTGGCGCGAGAATTAA |
| Transcript | >OphauB2|3086 ATGCTCCTGTTCTGCCCCTCTTGCGCCAACATTTTGACGGTATCGCTCACGGCCCAACGCACCAACCGTCTCGAG TGTCGCACCTGTCCCTTTGAGCACACCATCACCGAGCCCGTCTTTTCACGACGCGTCTTTGAGCGCAAGGAAAAG GAAGACGTCTTTGGCGGGCCGGGCGCCTGGGACAATGCGCAAAAGGGTCGCGCCCAGTGTCCTGCCCATGGCTGC GACGGCGACGAGGCTGCCTTTTTCCAAGTGCAGATTCGCAGTGCCGACGAGCCCATGACGAGCTTCTTCAAGTGC ATGGCGTGTGGTCACCGCTGGCGCGAGAATTAA |
| Gene | >OphauB2|3086 ATGCTCCTGTGTATCTCCTCCTCCTCCCCTCAGACTCTCTGACGCACGAGCCAGCCCAAAGACTAACACACCTGC TGCACAGTCTGCCCCTCTTGCGCCAACATTTTGACGGTATCGCTCACGGCCCAACGCACCAACCGTCTCGAGTGT CGCACCTGTCCCTTTGAGCACACCATCACCGAGCCCGTCTTTTCACGACGCGTCTTTGAGCGCAAGGAAAAGGAA GACGTCTTTGGCGGGCCGGGCGCCTGGGACAATGCGCAAAAGGGTCGCGCCCAGTGTCCTGCCCATGGCTGCGAC GGCGACGAGGCTGCCTTTTTCCAAGTGCAGATTCGCAGTGCCGACGAGCCCATGACGAGCTTCTTCAAGTGCATG GCGTGTGGTCACCGCTGGCGCGAGAATTAA |