Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3066
Gene name
LocationContig_20:47071..47879
Strand-
Gene length (bp)808
Transcript length (bp)627
Coding sequence length (bp)627
Protein length (aa) 209

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 1.5E-10 155 203

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 3 208 4.0E-08

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 159 181 22
2 188 207 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3066
MAILSATLQAAFLAAASNVLAQLITASRTKTSLAIDWIPVLQFTIFSIVNTPPNYLWQDYLESAFPARPRRRHAS
SEPARRPSLSLINTLAKFVLDQTVGAAVNTVLFSFFVHGLQDAMAPAPRITSLSAALAYSTGPGAIDLQRVHAAR
LVAIARAEFWPIINAGMRFWPLVSLLNFTLVKTVHARNLVGALAGVAWGVYMSIVAAR*
Coding >OphauB2|3066
ATGGCTATACTTTCTGCCACGCTGCAGGCTGCCTTTTTGGCGGCGGCGTCGAATGTGCTGGCGCAGCTCATTACG
GCCAGTCGCACCAAGACCAGCTTGGCCATTGATTGGATCCCGGTGCTCCAGTTTACCATTTTTAGCATCGTCAAC
ACGCCTCCCAACTACCTCTGGCAGGACTATCTAGAATCCGCCTTTCCCGCTCGGCCCCGCCGCCGCCACGCCTCG
TCTGAGCCTGCCCGGCGGCCCTCCCTCTCTCTGATAAACACGCTGGCCAAGTTTGTCCTTGACCAGACTGTCGGC
GCCGCCGTAAACACTGTCCTCTTTAGCTTCTTTGTCCACGGCCTGCAGGATGCCATGGCTCCTGCGCCTCGCATC
ACCAGCCTCTCAGCCGCCCTGGCCTACTCTACCGGCCCAGGCGCCATCGACTTGCAGCGCGTCCATGCTGCTCGC
CTCGTCGCCATTGCAAGGGCCGAGTTTTGGCCCATCATCAATGCCGGCATGCGCTTCTGGCCTCTAGTCAGCCTG
CTCAACTTTACTCTTGTCAAGACGGTCCATGCGCGCAACTTGGTAGGCGCCTTGGCCGGGGTTGCCTGGGGCGTC
TACATGAGTATCGTGGCCGCCCGCTGA
Transcript >OphauB2|3066
ATGGCTATACTTTCTGCCACGCTGCAGGCTGCCTTTTTGGCGGCGGCGTCGAATGTGCTGGCGCAGCTCATTACG
GCCAGTCGCACCAAGACCAGCTTGGCCATTGATTGGATCCCGGTGCTCCAGTTTACCATTTTTAGCATCGTCAAC
ACGCCTCCCAACTACCTCTGGCAGGACTATCTAGAATCCGCCTTTCCCGCTCGGCCCCGCCGCCGCCACGCCTCG
TCTGAGCCTGCCCGGCGGCCCTCCCTCTCTCTGATAAACACGCTGGCCAAGTTTGTCCTTGACCAGACTGTCGGC
GCCGCCGTAAACACTGTCCTCTTTAGCTTCTTTGTCCACGGCCTGCAGGATGCCATGGCTCCTGCGCCTCGCATC
ACCAGCCTCTCAGCCGCCCTGGCCTACTCTACCGGCCCAGGCGCCATCGACTTGCAGCGCGTCCATGCTGCTCGC
CTCGTCGCCATTGCAAGGGCCGAGTTTTGGCCCATCATCAATGCCGGCATGCGCTTCTGGCCTCTAGTCAGCCTG
CTCAACTTTACTCTTGTCAAGACGGTCCATGCGCGCAACTTGGTAGGCGCCTTGGCCGGGGTTGCCTGGGGCGTC
TACATGAGTATCGTGGCCGCCCGCTGA
Gene >OphauB2|3066
ATGGCTATACTTTCTGCCACGCTGCAGGCTGCCTTTTTGGCGGCGGCGTCGAATGTGCTGGCGCAGCTCATTACG
GCCAGTCGCACCAAGGTGTGTCTTTGCTGTCTTTTGCTCTGCTTTATTTATTTATTTATTTGCTTGCCCTACCTC
TCTTGCTTGCCCTGCGTCGAGGGAGCTGGCCCCAAGCTGACTGGCGGACAGACCAGCTTGGCCATTGATTGGATC
CCGGTGCTCCAGTTTACCATTTTTAGCATCGTCAACACGCCTCCCAACTACCTCTGGTGCGCCGACTTGCTCTTC
TCTTCCTCCTCACCCTTGGCTGCCTGCGTCTCACGCGTTGCATCGACACAGGCAGGACTATCTAGAATCCGCCTT
TCCCGCTCGGCCCCGCCGCCGCCACGCCTCGTCTGAGCCTGCCCGGCGGCCCTCCCTCTCTCTGATAAACACGCT
GGCCAAGTTTGTCCTTGACCAGACTGTCGGCGCCGCCGTAAACACTGTCCTCTTTAGCTTCTTTGTCCACGGCCT
GCAGGATGCCATGGCTCCTGCGCCTCGCATCACCAGCCTCTCAGCCGCCCTGGCCTACTCTACCGGCCCAGGCGC
CATCGACTTGCAGCGCGTCCATGCTGCTCGCCTCGTCGCCATTGCAAGGGCCGAGTTTTGGCCCATCATCAATGC
CGGCATGCGCTTCTGGCCTCTAGTCAGCCTGCTCAACTTTACTCTTGTCAAGACGGTCCATGCGCGCAACTTGGT
AGGCGCCTTGGCCGGGGTTGCCTGGGGCGTCTACATGAGTATCGTGGCCGCCCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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