Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|3054
Gene name
Location	Contig_2:404806..406384
Strand	-
Gene length (bp)	1578
Transcript length (bp)	1521
Coding sequence length (bp)	1521
Protein length (aa)	507

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	3.4E-01	332	347
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	1.2E-04	393	410
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	1.2E-02	414	430
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	1.8E+00	435	449

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P32505\|NAB2_YEAST	Nuclear polyadenylated RNA-binding protein NAB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB2 PE=1 SV=1	300	453	1.0E-11
sp\|O13713\|NAB2_SCHPO	Nuclear polyadenylated RNA-binding protein nab2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nab2 PE=3 SV=1	7	146	3.0E-08
sp\|O13713\|NAB2_SCHPO	Nuclear polyadenylated RNA-binding protein nab2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nab2 PE=3 SV=1	328	411	7.0E-08
sp\|Q5TYQ8\|ZC3HE_DANRE	Zinc finger CCCH domain-containing protein 14 OS=Danio rerio GN=zc3h14 PE=2 SV=1	309	430	2.0E-07
sp\|Q7TMD5\|ZC3HE_RAT	Zinc finger CCCH domain-containing protein 14 OS=Rattus norvegicus GN=Zc3h14 PE=1 SV=1	255	430	5.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P32505\|NAB2_YEAST	Nuclear polyadenylated RNA-binding protein NAB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB2 PE=1 SV=1	300	453	1.0E-11
sp\|O13713\|NAB2_SCHPO	Nuclear polyadenylated RNA-binding protein nab2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nab2 PE=3 SV=1	7	146	3.0E-08
sp\|O13713\|NAB2_SCHPO	Nuclear polyadenylated RNA-binding protein nab2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nab2 PE=3 SV=1	328	411	7.0E-08
sp\|Q5TYQ8\|ZC3HE_DANRE	Zinc finger CCCH domain-containing protein 14 OS=Danio rerio GN=zc3h14 PE=2 SV=1	309	430	2.0E-07
sp\|Q7TMD5\|ZC3HE_RAT	Zinc finger CCCH domain-containing protein 14 OS=Rattus norvegicus GN=Zc3h14 PE=1 SV=1	255	430	5.0E-07
sp\|Q5F3Z9\|ZC3HE_CHICK	Zinc finger CCCH domain-containing protein 14 OS=Gallus gallus GN=ZC3H14 PE=2 SV=1	360	449	1.0E-06
sp\|Q3ZC82\|ZC3HE_BOVIN	Zinc finger CCCH domain-containing protein 14 OS=Bos taurus GN=ZC3H14 PE=2 SV=2	364	449	2.0E-06
sp\|Q4R6F6\|ZC3HE_MACFA	Zinc finger CCCH domain-containing protein 14 OS=Macaca fascicularis GN=ZC3H14 PE=2 SV=2	255	449	4.0E-06
sp\|Q6PJT7\|ZC3HE_HUMAN	Zinc finger CCCH domain-containing protein 14 OS=Homo sapiens GN=ZC3H14 PE=1 SV=1	255	449	4.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 15	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|3054 MSVEISLNTPLADALNTAIKPKLVEVGWGTGGSDDSALAEYVILMLVNGKTQDQIAAELSGELLSLPADDPGVHD FSKWLFEQIDRLSRQVKTDGETLPDQAQEARNSADVDTEMTSNDVSELNVPTGPRSMRNNNVRGARDRRILGHMN KAMDRSGDAPLHRTRGNDRINTHGRPLPMGPRAGLGRAQRNSNNNLNNNNFRAASLQAGLGASSGPPGPSWNVYG PQPNQMELMAILEQQNQMMLQLSQQLMNGGAPSAPNGFGQRRGKSLFERVSDPQQRNNLRKGGTGNHHSHTNSNI KAANKDAAEAESDDIEMADSKHEPLKAEETVCKFNLNCTNKECKYAHQSPAAAAGISIDVNDTCSFGAACKNKKC VGRHPSPATKLAHQGEQDCKFFPNCQNPRCPFRHPSMPLCRNGPGCTTANCKFTHVKTKCKFSPCLNPHCVFAHE EGQQGSFRDKVWTAEAEEHVSERKFVDEGAAPERVRPGEGEEAMATTREQAAEVSG*
Coding	>OphauB2\|3054 ATGTCTGTCGAAATAAGTCTCAACACCCCCTTGGCTGATGCGCTTAACACTGCCATCAAGCCCAAGTTGGTCGAA GTAGGCTGGGGAACTGGGGGCTCCGACGACTCGGCTCTGGCTGAATATGTCATTTTGATGCTTGTCAATGGCAAA ACTCAGGATCAAATTGCCGCGGAACTCTCTGGAGAGCTGCTCAGTTTGCCTGCAGACGACCCAGGGGTCCACGAC TTTTCAAAATGGCTGTTTGAACAAATCGACCGTCTGAGTCGACAGGTGAAGACGGATGGCGAGACTTTGCCCGAC CAAGCGCAGGAGGCCCGTAACTCGGCAGATGTCGACACAGAAATGACATCAAACGACGTGTCCGAGTTGAATGTG CCTACCGGGCCACGATCGATGCGCAATAATAATGTGCGCGGTGCAAGGGACAGACGAATACTGGGCCACATGAAC AAAGCCATGGATCGCTCTGGTGATGCCCCGCTGCATCGTACTCGAGGCAACGACAGAATAAATACTCACGGACGA CCTCTTCCAATGGGCCCTCGAGCGGGGCTCGGACGAGCACAGCGCAACAGCAATAATAACTTGAATAATAACAAC TTTCGGGCAGCCAGCCTTCAGGCTGGTCTTGGTGCGTCTTCGGGACCTCCAGGACCCAGCTGGAACGTGTACGGC CCACAGCCCAACCAAATGGAGCTCATGGCAATTTTGGAACAACAAAACCAAATGATGCTTCAGCTCTCGCAGCAA CTCATGAATGGCGGGGCACCTTCGGCACCGAATGGCTTTGGGCAACGGCGTGGCAAATCGCTCTTTGAGCGAGTG TCTGACCCCCAGCAGCGAAACAACTTGCGCAAGGGAGGCACGGGCAACCACCATTCACACACAAACAGCAATATC AAGGCGGCCAACAAGGACGCAGCAGAGGCAGAGAGTGACGACATTGAAATGGCGGATTCGAAACACGAGCCTCTC AAAGCTGAGGAAACGGTGTGCAAGTTTAACTTGAATTGCACCAACAAGGAATGCAAATATGCTCATCAATCACCG GCGGCGGCAGCAGGGATATCAATTGATGTCAATGACACGTGCAGTTTTGGAGCGGCATGCAAAAACAAGAAGTGC GTCGGACGACATCCATCGCCAGCTACCAAGTTGGCACACCAGGGCGAGCAAGACTGCAAGTTTTTCCCCAACTGT CAGAACCCGCGGTGTCCATTCCGGCACCCGTCAATGCCTCTTTGCCGCAACGGGCCGGGCTGCACGACAGCGAAC TGCAAGTTTACGCATGTCAAGACCAAGTGCAAATTCTCGCCATGTCTCAACCCGCACTGTGTGTTTGCACATGAG GAGGGCCAGCAAGGCAGCTTCAGGGACAAGGTGTGGACGGCCGAGGCGGAGGAGCATGTGAGTGAGAGAAAGTTT GTGGACGAGGGAGCAGCGCCGGAGCGTGTCAGACCTGGTGAAGGCGAGGAAGCCATGGCTACGACAAGGGAGCAA GCAGCCGAAGTGAGTGGTTAA
Transcript	>OphauB2\|3054 ATGTCTGTCGAAATAAGTCTCAACACCCCCTTGGCTGATGCGCTTAACACTGCCATCAAGCCCAAGTTGGTCGAA GTAGGCTGGGGAACTGGGGGCTCCGACGACTCGGCTCTGGCTGAATATGTCATTTTGATGCTTGTCAATGGCAAA ACTCAGGATCAAATTGCCGCGGAACTCTCTGGAGAGCTGCTCAGTTTGCCTGCAGACGACCCAGGGGTCCACGAC TTTTCAAAATGGCTGTTTGAACAAATCGACCGTCTGAGTCGACAGGTGAAGACGGATGGCGAGACTTTGCCCGAC CAAGCGCAGGAGGCCCGTAACTCGGCAGATGTCGACACAGAAATGACATCAAACGACGTGTCCGAGTTGAATGTG CCTACCGGGCCACGATCGATGCGCAATAATAATGTGCGCGGTGCAAGGGACAGACGAATACTGGGCCACATGAAC AAAGCCATGGATCGCTCTGGTGATGCCCCGCTGCATCGTACTCGAGGCAACGACAGAATAAATACTCACGGACGA CCTCTTCCAATGGGCCCTCGAGCGGGGCTCGGACGAGCACAGCGCAACAGCAATAATAACTTGAATAATAACAAC TTTCGGGCAGCCAGCCTTCAGGCTGGTCTTGGTGCGTCTTCGGGACCTCCAGGACCCAGCTGGAACGTGTACGGC CCACAGCCCAACCAAATGGAGCTCATGGCAATTTTGGAACAACAAAACCAAATGATGCTTCAGCTCTCGCAGCAA CTCATGAATGGCGGGGCACCTTCGGCACCGAATGGCTTTGGGCAACGGCGTGGCAAATCGCTCTTTGAGCGAGTG TCTGACCCCCAGCAGCGAAACAACTTGCGCAAGGGAGGCACGGGCAACCACCATTCACACACAAACAGCAATATC AAGGCGGCCAACAAGGACGCAGCAGAGGCAGAGAGTGACGACATTGAAATGGCGGATTCGAAACACGAGCCTCTC AAAGCTGAGGAAACGGTGTGCAAGTTTAACTTGAATTGCACCAACAAGGAATGCAAATATGCTCATCAATCACCG GCGGCGGCAGCAGGGATATCAATTGATGTCAATGACACGTGCAGTTTTGGAGCGGCATGCAAAAACAAGAAGTGC GTCGGACGACATCCATCGCCAGCTACCAAGTTGGCACACCAGGGCGAGCAAGACTGCAAGTTTTTCCCCAACTGT CAGAACCCGCGGTGTCCATTCCGGCACCCGTCAATGCCTCTTTGCCGCAACGGGCCGGGCTGCACGACAGCGAAC TGCAAGTTTACGCATGTCAAGACCAAGTGCAAATTCTCGCCATGTCTCAACCCGCACTGTGTGTTTGCACATGAG GAGGGCCAGCAAGGCAGCTTCAGGGACAAGGTGTGGACGGCCGAGGCGGAGGAGCATGTGAGTGAGAGAAAGTTT GTGGACGAGGGAGCAGCGCCGGAGCGTGTCAGACCTGGTGAAGGCGAGGAAGCCATGGCTACGACAAGGGAGCAA GCAGCCGAAGTGAGTGGTTAA
Gene	>OphauB2\|3054 ATGTCTGTCGAAATAAGTCTCAACACCCCCTTGGCTGATGCGCTTAACACTGCCATCAAGCCCAAGTTGGTCGAA GTAGGCTGGGGAACTGGGGGCTCCGACGACTCGGCTCTGGCTGAATATGTCATTTTGATGCTTGTCAATGGCAAA ACTCAGGATCAAATTGCCGCGGAACTCTCTGGAGAGCTGCTCAGTTTGCCTGCAGACGACCCAGGGGTCCACGAC TTTTCAAAATGGCTGTTTGAACAAATCGACCGTCTGAGTCGACAGGTGAAGACGGATGGCGAGACTTTGCCCGAC CAAGCGCAGGAGGCCCGTAACTCGGCAGATGTCGACACAGAAATGACATCAAACGACGTGTCCGAGTTGAATGTG TTTGTTTCTCTGGCCCCGAATACCGATTAACTGCAGCAGCTAACGGGTTTCAATAGGCCTACCGGGCCACGATCG ATGCGCAATAATAATGTGCGCGGTGCAAGGGACAGACGAATACTGGGCCACATGAACAAAGCCATGGATCGCTCT GGTGATGCCCCGCTGCATCGTACTCGAGGCAACGACAGAATAAATACTCACGGACGACCTCTTCCAATGGGCCCT CGAGCGGGGCTCGGACGAGCACAGCGCAACAGCAATAATAACTTGAATAATAACAACTTTCGGGCAGCCAGCCTT CAGGCTGGTCTTGGTGCGTCTTCGGGACCTCCAGGACCCAGCTGGAACGTGTACGGCCCACAGCCCAACCAAATG GAGCTCATGGCAATTTTGGAACAACAAAACCAAATGATGCTTCAGCTCTCGCAGCAACTCATGAATGGCGGGGCA CCTTCGGCACCGAATGGCTTTGGGCAACGGCGTGGCAAATCGCTCTTTGAGCGAGTGTCTGACCCCCAGCAGCGA AACAACTTGCGCAAGGGAGGCACGGGCAACCACCATTCACACACAAACAGCAATATCAAGGCGGCCAACAAGGAC GCAGCAGAGGCAGAGAGTGACGACATTGAAATGGCGGATTCGAAACACGAGCCTCTCAAAGCTGAGGAAACGGTG TGCAAGTTTAACTTGAATTGCACCAACAAGGAATGCAAATATGCTCATCAATCACCGGCGGCGGCAGCAGGGATA TCAATTGATGTCAATGACACGTGCAGTTTTGGAGCGGCATGCAAAAACAAGAAGTGCGTCGGACGACATCCATCG CCAGCTACCAAGTTGGCACACCAGGGCGAGCAAGACTGCAAGTTTTTCCCCAACTGTCAGAACCCGCGGTGTCCA TTCCGGCACCCGTCAATGCCTCTTTGCCGCAACGGGCCGGGCTGCACGACAGCGAACTGCAAGTTTACGCATGTC AAGACCAAGTGCAAATTCTCGCCATGTCTCAACCCGCACTGTGTGTTTGCACATGAGGAGGGCCAGCAAGGCAGC TTCAGGGACAAGGTGTGGACGGCCGAGGCGGAGGAGCATGTGAGTGAGAGAAAGTTTGTGGACGAGGGAGCAGCG CCGGAGCGTGTCAGACCTGGTGAAGGCGAGGAAGCCATGGCTACGACAAGGGAGCAAGCAGCCGAAGTGAGTGGT TAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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