Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3010
Gene name
LocationContig_2:292379..292973
Strand-
Gene length (bp)594
Transcript length (bp)594
Coding sequence length (bp)594
Protein length (aa) 198

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04939 RRS1 Ribosome biogenesis regulatory protein (RRS1) 3.5E-58 18 185

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1 1 189 3.0E-42
sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.16 PE=1 SV=1 9 173 2.0E-34
sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=1 SV=1 11 179 6.0E-29
sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1 11 179 7.0E-29
sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2 11 149 1.0E-27
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Swissprot ID Swissprot Description Start End E-value
sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1 1 189 3.0E-42
sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.16 PE=1 SV=1 9 173 2.0E-34
sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=1 SV=1 11 179 6.0E-29
sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1 11 179 7.0E-29
sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2 11 149 1.0E-27
sp|Q2KIH4|RRS1_BOVIN Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1 11 149 9.0E-27
sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2 19 138 3.0E-17
sp|A8WY26|RRS1_CAEBR Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis briggsae GN=rrbs-1 PE=3 SV=1 13 185 8.0E-17
sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis elegans GN=rrbs-1 PE=3 SV=1 13 179 1.0E-16
sp|Q869Q2|RRS1_DICDI Ribosome biogenesis regulatory protein homolog OS=Dictyostelium discoideum GN=rrs1 PE=3 SV=1 13 147 2.0E-11
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0042254 ribosome biogenesis Yes
GO:0110165 cellular anatomical entity No
GO:0071840 cellular component organization or biogenesis No
GO:0043229 intracellular organelle No
GO:0009987 cellular process No
GO:0043226 organelle No
GO:0043227 membrane-bounded organelle No
GO:0008150 biological_process No
GO:0022613 ribonucleoprotein complex biogenesis No
GO:0005575 cellular_component No
GO:0044085 cellular component biogenesis No
GO:0043231 intracellular membrane-bounded organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3010
MAIPTLPKLPVAVDKPTPYTFDLGLLVAQDPNPVIIDPAAPELSLAQLARDGAQSLINQLLTTCPLRSTTDGVIL
SLPPLSTRLPREKPVPEARPQTKWERFAEKKGIAPKTREQRRNLVYDDESGQWRRKWGYKGLNKKGENDWLVEVD
PQKEMQRKQGTTARGDARRERKERIRRNERKMRSNQRNAADALGKPT*
Coding >OphauB2|3010
ATGGCTATTCCTACACTGCCCAAACTGCCTGTGGCTGTCGACAAGCCCACGCCCTACACCTTCGACCTTGGCCTC
CTTGTCGCCCAGGATCCCAATCCCGTTATTATCGATCCAGCCGCCCCTGAACTGTCCCTTGCACAACTTGCCCGC
GATGGTGCTCAATCCCTCATCAACCAACTATTAACCACATGCCCTTTACGCTCCACCACGGACGGCGTGATTCTC
TCCCTACCGCCTCTCTCAACACGTCTCCCGCGCGAAAAACCTGTGCCCGAAGCCCGTCCGCAGACAAAATGGGAG
CGCTTTGCCGAGAAGAAGGGCATTGCTCCCAAGACACGCGAGCAGCGGCGCAACCTCGTCTACGATGACGAATCT
GGCCAGTGGCGACGCAAATGGGGGTACAAGGGACTGAATAAAAAGGGAGAGAACGATTGGCTAGTAGAAGTTGAT
CCGCAAAAGGAGATGCAGCGCAAGCAAGGTACAACAGCCAGAGGCGACGCTCGTCGCGAGCGCAAGGAAAGGATC
AGGCGCAACGAGCGCAAGATGAGGAGCAACCAGCGTAATGCTGCTGACGCCTTGGGCAAACCAACATGA
Transcript >OphauB2|3010
ATGGCTATTCCTACACTGCCCAAACTGCCTGTGGCTGTCGACAAGCCCACGCCCTACACCTTCGACCTTGGCCTC
CTTGTCGCCCAGGATCCCAATCCCGTTATTATCGATCCAGCCGCCCCTGAACTGTCCCTTGCACAACTTGCCCGC
GATGGTGCTCAATCCCTCATCAACCAACTATTAACCACATGCCCTTTACGCTCCACCACGGACGGCGTGATTCTC
TCCCTACCGCCTCTCTCAACACGTCTCCCGCGCGAAAAACCTGTGCCCGAAGCCCGTCCGCAGACAAAATGGGAG
CGCTTTGCCGAGAAGAAGGGCATTGCTCCCAAGACACGCGAGCAGCGGCGCAACCTCGTCTACGATGACGAATCT
GGCCAGTGGCGACGCAAATGGGGGTACAAGGGACTGAATAAAAAGGGAGAGAACGATTGGCTAGTAGAAGTTGAT
CCGCAAAAGGAGATGCAGCGCAAGCAAGGTACAACAGCCAGAGGCGACGCTCGTCGCGAGCGCAAGGAAAGGATC
AGGCGCAACGAGCGCAAGATGAGGAGCAACCAGCGTAATGCTGCTGACGCCTTGGGCAAACCAACATGA
Gene >OphauB2|3010
ATGGCTATTCCTACACTGCCCAAACTGCCTGTGGCTGTCGACAAGCCCACGCCCTACACCTTCGACCTTGGCCTC
CTTGTCGCCCAGGATCCCAATCCCGTTATTATCGATCCAGCCGCCCCTGAACTGTCCCTTGCACAACTTGCCCGC
GATGGTGCTCAATCCCTCATCAACCAACTATTAACCACATGCCCTTTACGCTCCACCACGGACGGCGTGATTCTC
TCCCTACCGCCTCTCTCAACACGTCTCCCGCGCGAAAAACCTGTGCCCGAAGCCCGTCCGCAGACAAAATGGGAG
CGCTTTGCCGAGAAGAAGGGCATTGCTCCCAAGACACGCGAGCAGCGGCGCAACCTCGTCTACGATGACGAATCT
GGCCAGTGGCGACGCAAATGGGGGTACAAGGGACTGAATAAAAAGGGAGAGAACGATTGGCTAGTAGAAGTTGAT
CCGCAAAAGGAGATGCAGCGCAAGCAAGGTACAACAGCCAGAGGCGACGCTCGTCGCGAGCGCAAGGAAAGGATC
AGGCGCAACGAGCGCAAGATGAGGAGCAACCAGCGTAATGCTGCTGACGCCTTGGGCAAACCAACATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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