Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|3002
Gene name
LocationContig_2:265635..266704
Strand+
Gene length (bp)1069
Transcript length (bp)924
Coding sequence length (bp)924
Protein length (aa) 308

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 4.2E-30 51 159

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 1 255 4.0E-61
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 1 252 2.0E-47
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 1 178 6.0E-17
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 1 258 8.0E-17
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 1 178 8.0E-14
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 1 255 4.0E-61
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 1 252 2.0E-47
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 1 178 6.0E-17
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 1 258 8.0E-17
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 1 178 8.0E-14
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 12 169 2.0E-07
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 12 169 2.0E-07
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 12 169 2.0E-07
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 12 169 1.0E-06
sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1 2 162 1.0E-06
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GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:0032991 protein-containing complex No
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0005575 cellular_component No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2778
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5368
Ophiocordyceps australis map64 (Brazil) OphauB2|3002 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|00249
Ophiocordyceps camponoti-rufipedis Ophun1|2931
Ophiocordyceps kimflemingae Ophio5|4683
Ophiocordyceps subramaniannii Hirsu2|443

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|3002
MRGKRSKQYRKLMEQFSMTFGFREPYQILVDAEMIVDSCRFKMELAPALQRTVHGKAKPMITQCEIRKLYARKSE
MGMDEAIEVARSYERRRCGHHPNEFPEPLSTMECLKAVVDSKSTGENKHRYVVASQNQQVRRMLRSIRGVPLIYI
KRSVMILEPMSDKSAETRVREERGKFRSEIKTSLGKRKRMDKEADDGRDERESFKDNDAEDNAVDDELPTNDKSK
SQNLSAKGAEKANKSRQRGPKGPNPLSVRKPKQTTVAATLADAGRRDTPMPKADSRPAADIAAKRKRRRKSKVTV
EPERQEM*
Coding >OphauB2|3002
ATGAGGGGGAAGCGATCGAAACAATACCGAAAGCTCATGGAGCAATTCTCTATGACTTTTGGATTCCGAGAACCA
TATCAAATTCTGGTCGACGCTGAAATGATAGTGGACTCGTGCCGATTCAAAATGGAATTGGCACCGGCCTTGCAA
CGAACGGTCCATGGGAAGGCCAAGCCCATGATTACGCAGTGCGAGATCCGAAAACTCTACGCACGAAAGAGCGAG
ATGGGCATGGACGAGGCCATTGAAGTGGCCAGATCTTACGAGCGACGACGGTGCGGTCATCATCCCAACGAGTTT
CCCGAGCCACTCAGCACAATGGAGTGTTTAAAGGCAGTCGTGGACTCCAAATCTACGGGTGAAAACAAACACCGC
TATGTGGTGGCAAGCCAGAATCAGCAGGTCCGGCGGATGCTGCGAAGCATCCGAGGCGTACCCTTGATCTATATC
AAGCGCAGCGTCATGATACTGGAACCAATGTCAGACAAAAGTGCCGAGACACGCGTTCGTGAGGAGCGAGGAAAG
TTTCGGTCGGAGATCAAGACGAGTCTCGGCAAAAGGAAGCGAATGGACAAGGAAGCAGATGATGGCAGAGACGAA
AGGGAGAGCTTCAAGGACAACGACGCTGAAGACAATGCAGTCGATGATGAGTTGCCCACCAACGACAAATCCAAA
TCGCAGAATCTTTCGGCCAAAGGGGCGGAAAAGGCAAATAAGTCAAGGCAAAGAGGACCAAAGGGACCAAATCCG
CTGTCGGTTCGAAAACCCAAGCAAACAACAGTAGCGGCAACATTGGCAGACGCAGGGCGAAGAGACACACCAATG
CCAAAAGCAGATTCAAGGCCTGCTGCAGATATTGCAGCCAAGAGGAAGCGCCGAAGAAAAAGCAAAGTGACTGTC
GAGCCTGAGAGGCAGGAGATGTAG
Transcript >OphauB2|3002
ATGAGGGGGAAGCGATCGAAACAATACCGAAAGCTCATGGAGCAATTCTCTATGACTTTTGGATTCCGAGAACCA
TATCAAATTCTGGTCGACGCTGAAATGATAGTGGACTCGTGCCGATTCAAAATGGAATTGGCACCGGCCTTGCAA
CGAACGGTCCATGGGAAGGCCAAGCCCATGATTACGCAGTGCGAGATCCGAAAACTCTACGCACGAAAGAGCGAG
ATGGGCATGGACGAGGCCATTGAAGTGGCCAGATCTTACGAGCGACGACGGTGCGGTCATCATCCCAACGAGTTT
CCCGAGCCACTCAGCACAATGGAGTGTTTAAAGGCAGTCGTGGACTCCAAATCTACGGGTGAAAACAAACACCGC
TATGTGGTGGCAAGCCAGAATCAGCAGGTCCGGCGGATGCTGCGAAGCATCCGAGGCGTACCCTTGATCTATATC
AAGCGCAGCGTCATGATACTGGAACCAATGTCAGACAAAAGTGCCGAGACACGCGTTCGTGAGGAGCGAGGAAAG
TTTCGGTCGGAGATCAAGACGAGTCTCGGCAAAAGGAAGCGAATGGACAAGGAAGCAGATGATGGCAGAGACGAA
AGGGAGAGCTTCAAGGACAACGACGCTGAAGACAATGCAGTCGATGATGAGTTGCCCACCAACGACAAATCCAAA
TCGCAGAATCTTTCGGCCAAAGGGGCGGAAAAGGCAAATAAGTCAAGGCAAAGAGGACCAAAGGGACCAAATCCG
CTGTCGGTTCGAAAACCCAAGCAAACAACAGTAGCGGCAACATTGGCAGACGCAGGGCGAAGAGACACACCAATG
CCAAAAGCAGATTCAAGGCCTGCTGCAGATATTGCAGCCAAGAGGAAGCGCCGAAGAAAAAGCAAAGTGACTGTC
GAGCCTGAGAGGCAGGAGATGTAG
Gene >OphauB2|3002
ATGAGGGGGAAGCGATCGAAACAATACCGAAAGCTCATGGAGCAATTCTCTATGACTTTTGGATTCCGAGAACCA
TATCAAATTCTGGGTGAGTTGAATGCAGACTTGACAACATGCTGCGTGTGCTGATTACATCATGCCAAGTCGACG
CTGAAATGATAGTGGACTCGTGCCGATTCAAAATGGAATTGGCACCGGCCTTGCAACGAACGGTCCATGGGAAGG
CCAAGCCCAGTGCGTCTCTCCTGCCGTGTTCAGATGATATGGCAGTTTCTCTTTAGCTTTTGAGCCTGGCGATTC
TTCAGCTCACAAGATTGTGACAGTGATTACGCAGTGCGAGATCCGAAAACTCTACGCACGAAAGAGCGAGATGGG
CATGGACGAGGCCATTGAAGTGGCCAGATCTTACGAGCGACGACGGTGCGGTCATCATCCCAACGAGTTTCCCGA
GCCACTCAGCACAATGGAGTGTTTAAAGGCAGTCGTGGACTCCAAATCTACGGGTGAAAACAAACACCGCTATGT
GGTGGCAAGCCAGAATCAGCAGGTCCGGCGGATGCTGCGAAGCATCCGAGGCGTACCCTTGATCTATATCAAGCG
CAGCGTCATGATACTGGAACCAATGTCAGACAAAAGTGCCGAGACACGCGTTCGTGAGGAGCGAGGAAAGTTTCG
GTCGGAGATCAAGACGAGTCTCGGCAAAAGGAAGCGAATGGACAAGGAAGCAGATGATGGCAGAGACGAAAGGGA
GAGCTTCAAGGACAACGACGCTGAAGACAATGCAGTCGATGATGAGTTGCCCACCAACGACAAATCCAAATCGCA
GAATCTTTCGGCCAAAGGGGCGGAAAAGGCAAATAAGTCAAGGCAAAGAGGACCAAAGGGACCAAATCCGCTGTC
GGTTCGAAAACCCAAGCAAACAACAGTAGCGGCAACATTGGCAGACGCAGGGCGAAGAGACACACCAATGCCAAA
AGCAGATTCAAGGCCTGCTGCAGATATTGCAGCCAAGAGGAAGCGCCGAAGAAAAAGCAAAGTGACTGTCGAGCC
TGAGAGGCAGGAGATGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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