© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2966 |
| Gene name | |
| Location | Contig_2:178763..181231 |
| Strand | + |
| Gene length (bp) | 2468 |
| Transcript length (bp) | 2124 |
| Coding sequence length (bp) | 2124 |
| Protein length (aa) | 708 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11935 | SYMPK_PTA1_N | Symplekin/PTA1 N-terminal | 4.0E-71 | 90 | 309 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10222|PTA1_SCHPO | mRNA cleavage and polyadenylation specificity factor complex subunit pta1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pta1 PE=1 SV=2 | 9 | 660 | 2.0E-64 |
| sp|Q92797|SYMPK_HUMAN | Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2 | 474 | 680 | 5.0E-10 |
| sp|Q92797|SYMPK_HUMAN | Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2 | 76 | 280 | 2.0E-09 |
| sp|Q01329|PTA1_YEAST | Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1 | 74 | 244 | 2.0E-09 |
| sp|Q80X82|SYMPK_MOUSE | Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1 | 76 | 280 | 7.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10222|PTA1_SCHPO | mRNA cleavage and polyadenylation specificity factor complex subunit pta1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pta1 PE=1 SV=2 | 9 | 660 | 2.0E-64 |
| sp|Q92797|SYMPK_HUMAN | Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2 | 474 | 680 | 5.0E-10 |
| sp|Q92797|SYMPK_HUMAN | Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2 | 76 | 280 | 2.0E-09 |
| sp|Q01329|PTA1_YEAST | Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1 | 74 | 244 | 2.0E-09 |
| sp|Q80X82|SYMPK_MOUSE | Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1 | 76 | 280 | 7.0E-09 |
| sp|Q8MSU4|SYMPK_DROME | Symplekin OS=Drosophila melanogaster GN=Sym PE=1 SV=1 | 74 | 277 | 8.0E-09 |
| sp|Q80X82|SYMPK_MOUSE | Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1 | 474 | 680 | 6.0E-08 |
| sp|Q7ZYV9|SYMPK_XENLA | Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1 | 76 | 273 | 4.0E-07 |
| sp|Q7ZYV9|SYMPK_XENLA | Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1 | 487 | 661 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2966 MASTLSVSEQIRQLNDARKLVLGDVKYYPSVVKGILPIIGPSAPVDLRRWGTEFLAEAFSTPALPSGEKETMQPY VLATLQSLVDDEREDAHVLRSVIRTAASIYPLALRWIINNGYDTVTWDKMMAIKQRILYIWDNAVPSVRICCIKF VQRVILAQSVAGTTDLRYGGTLDISLDKVPINHQILDMRSLEAEAMGLLDRMLGILQDSSDALLVDATLNCLSVM VRTRPSMSGRILNALLSFNPLQAATSPLTPKSRVMVRSMEKTLRLLLIHLSKRDAHNGLISRIHQHVERTMRAAA ELFDDVSKKRSLGAHQSNGVDAKRQRTIGPHVPIQPLGPGPHTLGDVFTLISNPDLKNFDISQLPHSVVAKVSVI ALAGLDKDVLTKAVDGVRGRLDEVANAPAPELNPNTAPLGVDDDDDDYEPDFYPAEDTEQILNKLDGASPKVPED TGGLALVSFSLGQPVELTVETALSAGSGTITRVLESIKSLAEPAARKEKAGFNRLAASSGGREGWMSILTRLATR ASVGLEEQEVKDEMGRHEQTPLLSNVIREVMYDFVMEDFRKRIDVAVSWLCEEWYNDQIRRRTGDEQVGNYEKCA LRLLDGFLPYLNPQDKVLTRFLGEAPDLNRTMLSRVKDMCRDPSVTQLALTSLLYLAMMRPPAREIALDTVQDIW TDFEDARPMASKYLVKYRPGFLDEAAAAAATA* |
| Coding | >OphauB2|2966 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGTGTTGTCAAAGGCATCCTACCCATTATTGGGCCATCAGCTCCCGTCGACCTGCGACGATGG GGCACCGAGTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAGCGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTCCAATCGCTTGTTGATGATGAGCGGGAAGACGCGCACGTGCTGCGCAGCGTCATCCGAACT GCTGCCAGCATATACCCGCTTGCGCTGCGCTGGATCATCAACAACGGATACGACACGGTTACTTGGGATAAGATG ATGGCCATCAAGCAGAGGATCCTATACATATGGGACAATGCGGTACCCTCGGTGCGCATATGCTGCATCAAGTTT GTTCAGCGCGTCATTTTGGCCCAAAGCGTAGCGGGAACTACTGACCTGAGGTACGGCGGAACACTCGACATATCA TTGGACAAGGTGCCAATCAACCATCAAATCCTTGACATGCGCAGCCTCGAGGCGGAAGCCATGGGTCTGCTGGAT CGAATGCTGGGAATCTTGCAGGACAGCAGCGATGCTTTACTAGTAGATGCGACGCTCAACTGTCTGTCCGTCATG GTGCGCACACGACCATCCATGTCGGGGCGCATCCTCAACGCACTGCTCAGCTTCAATCCGCTGCAAGCGGCCACG TCGCCCTTGACGCCCAAGTCGCGCGTCATGGTCAGATCAATGGAGAAGACGTTGCGGCTGCTGCTAATTCACCTC AGCAAAAGAGATGCCCACAATGGGCTCATATCGCGCATTCACCAGCACGTCGAGCGCACCATGCGTGCCGCAGCC GAGCTGTTTGATGACGTGAGCAAGAAGAGGTCCTTGGGGGCTCATCAAAGCAATGGGGTGGATGCCAAGCGCCAA CGAACCATTGGGCCACACGTGCCCATTCAACCCCTGGGTCCTGGTCCTCATACGCTGGGCGACGTCTTCACTCTC ATCAGCAACCCGGACCTCAAAAACTTTGACATTTCCCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCAGTGATT GCATTGGCCGGGCTAGATAAAGATGTCTTGACCAAAGCCGTGGATGGCGTGCGTGGCCGTCTTGATGAGGTAGCA AATGCGCCAGCGCCAGAATTGAATCCCAATACGGCGCCTCTGGGGGTTGACGACGACGACGACGACTACGAACCA GACTTTTATCCCGCCGAGGACACGGAACAGATACTCAACAAACTAGATGGCGCGTCTCCAAAAGTGCCTGAGGAC ACGGGCGGTCTGGCCCTTGTTTCATTTAGCCTCGGGCAGCCGGTGGAGCTTACAGTCGAGACTGCACTCAGTGCA GGAAGCGGAACGATTACGAGGGTGTTGGAGTCGATCAAGTCGCTGGCAGAGCCGGCGGCGCGCAAAGAAAAGGCG GGCTTCAACCGACTAGCTGCTAGTTCTGGGGGCCGCGAAGGCTGGATGTCGATTTTGACGCGGTTAGCAACCCGT GCCTCTGTAGGGCTCGAGGAGCAAGAGGTAAAGGATGAAATGGGGCGACATGAGCAGACGCCGTTGCTCAGCAAT GTGATTCGAGAAGTCATGTATGACTTTGTCATGGAGGATTTTCGAAAGCGCATTGATGTGGCTGTCTCATGGCTG TGCGAGGAATGGTACAATGACCAAATCAGGAGACGGACAGGCGACGAGCAAGTCGGAAACTACGAAAAGTGTGCG CTGCGGCTGCTTGACGGTTTCTTGCCCTATCTAAACCCGCAGGACAAGGTGCTGACGCGATTTCTGGGCGAGGCG CCCGACCTCAACCGCACCATGTTGTCGCGGGTCAAGGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCGTTG ACGAGTCTGTTATACCTGGCCATGATGCGCCCGCCGGCCCGGGAGATTGCGCTGGATACGGTGCAGGATATATGG ACCGACTTCGAGGATGCACGGCCCATGGCGTCCAAGTATCTGGTCAAGTATCGGCCTGGATTTCTGGACGAGGCG GCAGCAGCAGCAGCGACAGCATGA |
| Transcript | >OphauB2|2966 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGTGTTGTCAAAGGCATCCTACCCATTATTGGGCCATCAGCTCCCGTCGACCTGCGACGATGG GGCACCGAGTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAGCGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTCCAATCGCTTGTTGATGATGAGCGGGAAGACGCGCACGTGCTGCGCAGCGTCATCCGAACT GCTGCCAGCATATACCCGCTTGCGCTGCGCTGGATCATCAACAACGGATACGACACGGTTACTTGGGATAAGATG ATGGCCATCAAGCAGAGGATCCTATACATATGGGACAATGCGGTACCCTCGGTGCGCATATGCTGCATCAAGTTT GTTCAGCGCGTCATTTTGGCCCAAAGCGTAGCGGGAACTACTGACCTGAGGTACGGCGGAACACTCGACATATCA TTGGACAAGGTGCCAATCAACCATCAAATCCTTGACATGCGCAGCCTCGAGGCGGAAGCCATGGGTCTGCTGGAT CGAATGCTGGGAATCTTGCAGGACAGCAGCGATGCTTTACTAGTAGATGCGACGCTCAACTGTCTGTCCGTCATG GTGCGCACACGACCATCCATGTCGGGGCGCATCCTCAACGCACTGCTCAGCTTCAATCCGCTGCAAGCGGCCACG TCGCCCTTGACGCCCAAGTCGCGCGTCATGGTCAGATCAATGGAGAAGACGTTGCGGCTGCTGCTAATTCACCTC AGCAAAAGAGATGCCCACAATGGGCTCATATCGCGCATTCACCAGCACGTCGAGCGCACCATGCGTGCCGCAGCC GAGCTGTTTGATGACGTGAGCAAGAAGAGGTCCTTGGGGGCTCATCAAAGCAATGGGGTGGATGCCAAGCGCCAA CGAACCATTGGGCCACACGTGCCCATTCAACCCCTGGGTCCTGGTCCTCATACGCTGGGCGACGTCTTCACTCTC ATCAGCAACCCGGACCTCAAAAACTTTGACATTTCCCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCAGTGATT GCATTGGCCGGGCTAGATAAAGATGTCTTGACCAAAGCCGTGGATGGCGTGCGTGGCCGTCTTGATGAGGTAGCA AATGCGCCAGCGCCAGAATTGAATCCCAATACGGCGCCTCTGGGGGTTGACGACGACGACGACGACTACGAACCA GACTTTTATCCCGCCGAGGACACGGAACAGATACTCAACAAACTAGATGGCGCGTCTCCAAAAGTGCCTGAGGAC ACGGGCGGTCTGGCCCTTGTTTCATTTAGCCTCGGGCAGCCGGTGGAGCTTACAGTCGAGACTGCACTCAGTGCA GGAAGCGGAACGATTACGAGGGTGTTGGAGTCGATCAAGTCGCTGGCAGAGCCGGCGGCGCGCAAAGAAAAGGCG GGCTTCAACCGACTAGCTGCTAGTTCTGGGGGCCGCGAAGGCTGGATGTCGATTTTGACGCGGTTAGCAACCCGT GCCTCTGTAGGGCTCGAGGAGCAAGAGGTAAAGGATGAAATGGGGCGACATGAGCAGACGCCGTTGCTCAGCAAT GTGATTCGAGAAGTCATGTATGACTTTGTCATGGAGGATTTTCGAAAGCGCATTGATGTGGCTGTCTCATGGCTG TGCGAGGAATGGTACAATGACCAAATCAGGAGACGGACAGGCGACGAGCAAGTCGGAAACTACGAAAAGTGTGCG CTGCGGCTGCTTGACGGTTTCTTGCCCTATCTAAACCCGCAGGACAAGGTGCTGACGCGATTTCTGGGCGAGGCG CCCGACCTCAACCGCACCATGTTGTCGCGGGTCAAGGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCGTTG ACGAGTCTGTTATACCTGGCCATGATGCGCCCGCCGGCCCGGGAGATTGCGCTGGATACGGTGCAGGATATATGG ACCGACTTCGAGGATGCACGGCCCATGGCGTCCAAGTATCTGGTCAAGTATCGGCCTGGATTTCTGGACGAGGCG GCAGCAGCAGCAGCGACAGCATGA |
| Gene | >OphauB2|2966 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGTGTTGTCAAAGGCATCCTACCCATTATTGGGCCATCAGCTCCCGTCGACCTGCGACGATGG GGCACCGAGTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAGCGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTCCAATCGCTTGTTGATGATGAGCGGGAAGACGCGCACGTGCTGCGCAGCGTCATCCGAACT GCTGCCAGCATATACCCGCTTGCGCTGCGCTGGATGTGCGTAGTCCTGGCGTGTTTGATTGCCTTGGATTCTAGG ACTGATGATGGACCGTAGCATCAACAACGGATACGACACGGTTACTTGGGATAAGATGATGGCCATCAAGCAGAG GATCCTATACATATGGGACAATGCGGTACCCTCGGTGCGCATATGCTGCATCAAGTTTGTTCAGCGCGTCATTTT GGCCCAAAGCGTAGCGGGAACTACTGACCTGAGGGTGCGTTTGCGCTGCCCATGATATCCTGCTTGTCTGCTTGG TACTAAACCACGTTTACAGTACGGCGGAACACTCGACATATCATTGGACAAGGTGCCAATCAACCATCAAATCCT TGACATGCGCAGCCTCGAGGCGGAAGCCATGGGTCTGCTGGATCGAATGCTGGGAATCTTGCAGGACAGCAGGTA ACGTTTGCCCCGAGATTGGAGCCGGCCCCGTCCCATGACAAGAGAAGGCTCATGCTGTTGTTGTGATAGCGATGC TTTACTAGTAGATGCGACGCTCAACTGTCTGTCCGTCATGGTGCGCACACGACCATCCATGTCGGGGCGCATCCT CAACGCACTGCTCAGCTTCAATCCGCTGCAAGCGGCCACGTCGCCCTTGACGCCCAAGTCGCGCGTCATGGTCAG ATCAATGGAGAAGACGTTGCGGCTGCTGCTAATTCACCTCAGCAAAAGAGATGCCCACAATGGGCTCATATCGCG CATTCACCAGCACGTCGAGCGCACCATGCGTGCCGCAGCCGAGCTGTTTGATGACGTGAGCAAGAAGAGGTCCTT GGGGGCTCATCAAAGCAATGGGGTGGATGCCAAGCGCCAACGAACCATTGGGCCACACGTGCCCATTCAACCCCT GGGTCCTGGTCCTCATACGCTGGGCGACGTCTTCACTCTCATCAGCAACCCGGACCTCAAAAACTTTGACATTTC CCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCAGTGATTGCATTGGCCGGGCTAGATAAAGATGTCTTGACCAA AGCCGTGGATGGCGTGCGTGGCCGTCTTGATGAGGTAGCAAATGCGCCAGCGCCAGAATTGAATCCCAATACGGC GCCTCTGGGGGTTGACGACGACGACGACGACTACGAACCAGACTTTTATCCCGCCGAGGACACGGAACAGATACT CAACAAACTAGATGGCGCGTCTCCAAAAGTGCCTGAGGACACGGGCGGTCTGGCCCTTGTTTCATTTAGCCTCGG GCAGCCGGTGGAGCTTACAGTCGAGACTGCACTCAGTGCAGGAAGCGGAACGATTACGAGGGTGTTGGAGTCGAT CAAGTCGCTGGCAGAGCCGGCGGCGCGCAAAGAAAAGGCGGGCTTCAACCGACTAGCTGCTAGTTCTGGGGGCCG CGAAGGCTGGATGTCGATTTTGACGCGGTTAGCAACCCGTGCCTCTGTAGGGCTCGAGGAGCAAGAGGTAAAGGA TGAAATGGGGCGACATGAGCAGACGCCGTTGCTCAGCAATGTGATTCGAGAAGTCATGTATGACTTTGTCATGGA GGATTTTCGAAAGCGCATTGATGTGGCTGTCTCATGGCTGTGCGAGGAATGGTACAATGACCAAATCAGGAGACG GACAGGCGACGAGCAAGTCGGAAACTACGAAAAGTGTGCGCTGCGGCTGCTTGACGGTTTCTTGCCCTATCTAAA CCCGCAGGACAAGGTGCTGACGCGATTTCTGGGCGAGGCGCCCGACCTCAACCGCACCATGTTGTCGCGGGTCAA GGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCGTTGACGAGTCTGTTATACCTGGCCATGATGCGCCCGCC GGCCCGGGAGATTGCGCTGGATACGGTGCAGGATATATGGACCGACTGTAGGTTTTTTTTTTTTCTTTTTTTTTT CTTTTTTTTTAACCTCGCCTTGCTCTCTCTTTCTACGTGTCCCTCCCTCCCTCTCTCTTTACCTCTGTCCCGAGG TGCCATTGAGATTTTGCTGCCACGAGTTGCTCTCGCTAATTGCAGGAATAGTCGAGGATGCACGGCCCATGGCGT CCAAGTATCTGGTCAAGTATCGGCCTGGATTTCTGGACGAGGCGGCAGCAGCAGCAGCGACAGCATGA |