Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2932
Gene name
LocationContig_2:95513..96703
Strand-
Gene length (bp)1190
Transcript length (bp)1134
Coding sequence length (bp)1134
Protein length (aa) 378

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain 1.6E-24 98 243
PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain 3.2E-22 68 365

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc40 PE=3 SV=1 15 375 8.0E-101
sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III subunit RPAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC40 PE=1 SV=1 18 369 5.0E-95
sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1c PE=1 SV=3 6 372 1.0E-87
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1 6 372 1.0E-84
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1 17 372 1.0E-83
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Swissprot ID Swissprot Description Start End E-value
sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc40 PE=3 SV=1 15 375 8.0E-101
sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III subunit RPAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC40 PE=1 SV=1 18 369 5.0E-95
sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1c PE=1 SV=3 6 372 1.0E-87
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1 6 372 1.0E-84
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1 17 372 1.0E-83
sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1 16 376 1.0E-60
sp|Q39211|NRPB3_ARATH DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1 57 364 1.0E-29
sp|Q39212|RPD3B_ARATH DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2 56 364 3.0E-29
sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1 63 372 5.0E-27
sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1 53 345 8.0E-22
sp|Q96YW0|RPOD_SULTO DNA-directed RNA polymerase subunit D OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoD PE=3 SV=1 78 370 2.0E-21
sp|P95989|RPOD_SULSO DNA-directed RNA polymerase subunit D OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoD PE=1 SV=1 73 377 3.0E-21
sp|C3N8R8|RPOD_SULIY DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|C3NMQ0|RPOD_SULIN DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|C3MJP7|RPOD_SULIL DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|C3MZ05|RPOD_SULIM DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|C4KJ93|RPOD_SULIK DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|C3N054|RPOD_SULIA DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus (strain M.16.27) GN=rpoD PE=3 SV=1 73 377 4.0E-21
sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB3 PE=1 SV=2 69 254 8.0E-19
sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpoD PE=3 SV=1 55 368 1.0E-18
sp|P39471|RPOD_SULAC DNA-directed RNA polymerase subunit D OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpoD PE=3 SV=2 80 372 2.0E-18
sp|P0CG28|RPOD_METAC DNA-directed RNA polymerase subunit D OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoD PE=3 SV=1 67 368 4.0E-18
sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=rpoD PE=3 SV=1 55 282 3.0E-17
sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb3 PE=1 SV=2 57 254 4.0E-17
sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpoD PE=3 SV=1 67 372 6.0E-17
sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rpoD PE=3 SV=1 67 368 3.0E-16
sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=2 SV=1 69 254 1.0E-15
sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2 69 254 1.0E-15
sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus GN=Polr2c PE=1 SV=1 69 254 3.0E-14
sp|Q9YB53|RPOD_AERPE DNA-directed RNA polymerase subunit D OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpoD PE=3 SV=2 80 368 1.0E-13
sp|Q8ZYQ3|RPOD_PYRAE DNA-directed RNA polymerase subunit D OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rpoD PE=3 SV=1 73 260 3.0E-12
sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpoD PE=3 SV=1 55 272 6.0E-12
sp|B1YC30|RPOD_PYRNV DNA-directed RNA polymerase subunit D OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoD PE=3 SV=1 73 364 1.0E-11
sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rpoD PE=3 SV=1 73 259 1.0E-11
sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoD PE=3 SV=1 54 244 1.0E-11
sp|Q5JJF4|RPOD_THEKO DNA-directed RNA polymerase subunit D OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoD PE=1 SV=1 55 244 3.0E-11
sp|Q57648|RPOD_METJA DNA-directed RNA polymerase subunit D OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpoD PE=1 SV=1 77 251 3.0E-11
sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpoD PE=3 SV=2 55 273 4.0E-11
sp|A4WNA4|RPOD_PYRAR DNA-directed RNA polymerase subunit D OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpoD PE=3 SV=1 73 258 8.0E-10
sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpoD PE=3 SV=1 73 256 3.0E-08
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GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0003899 DNA-directed 5'-3' RNA polymerase activity Yes
GO:0046983 protein dimerization activity Yes
GO:0009059 macromolecule biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0097747 RNA polymerase activity No
GO:1901576 organic substance biosynthetic process No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0003674 molecular_function No
GO:0003824 catalytic activity No
GO:0005488 binding No
GO:0008150 biological_process No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0140098 catalytic activity, acting on RNA No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0034062 5'-3' RNA polymerase activity No
GO:0016070 RNA metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0016740 transferase activity No
GO:0009058 biosynthetic process No
GO:0044238 primary metabolic process No
GO:0005515 protein binding No
GO:0097659 nucleic acid-templated transcription No
GO:0009987 cellular process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0016779 nucleotidyltransferase activity No
GO:0090304 nucleic acid metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2932
MSSARSAAWSAEGLKRRNRVGINKETVTNVTSTDFPGHVPGEDMAYSLERFREAVSVVLHQNKGNWASFSLIGVD
ASLSNAFRRIMLAEIETLAVENVFIEDNTSVIQDEVLAHRLGLIPFDGGREGLHHFLKGYSKAKEGEDPYAHCFD
WNTVRLELDVTCTHKRDAAPTETDPDRLYHHANVYARDIVFVPTGRQVDYFSGPNAIRPVNPDILIAKLRPRQRI
SLSMHMHKGIGGDHAKFSPVATASYRLMPTIDIVSPIVGADAQKLAECFPQGVIGLEPVSPDEAARPASGYQGHV
GELKAVVLDAMRDTVSRECLRHPEFQDKVKLGRRRDHFIFSIESVCQWDSDELFLEAVKHLKLKCKRLERQLVNM
VR*
Coding >OphauB2|2932
ATGTCTTCTGCCAGGTCAGCAGCTTGGAGCGCCGAGGGGCTGAAGCGCCGCAACAGGGTGGGAATCAACAAGGAA
ACGGTAACGAATGTGACATCTACCGACTTTCCAGGCCATGTTCCAGGCGAGGACATGGCCTACTCGCTCGAGCGG
TTCCGCGAGGCAGTCAGCGTCGTCCTTCACCAAAACAAGGGCAACTGGGCGTCCTTTTCCCTCATTGGCGTCGAC
GCATCATTGTCCAACGCCTTTCGACGCATCATGCTGGCCGAGATTGAAACTCTAGCGGTGGAAAATGTCTTCATC
GAGGACAACACGTCAGTCATTCAAGACGAAGTGCTGGCACATCGGCTGGGCCTGATTCCCTTTGACGGCGGGCGC
GAGGGCCTGCACCACTTCCTCAAGGGCTATAGCAAGGCCAAGGAAGGCGAGGACCCGTATGCCCACTGCTTCGAC
TGGAACACGGTGCGGCTGGAGCTCGACGTGACGTGCACGCACAAGCGCGACGCGGCGCCCACAGAAACCGATCCC
GACAGGCTCTACCACCACGCCAACGTCTACGCGCGAGACATTGTCTTTGTGCCGACGGGCCGGCAGGTGGACTAC
TTTTCAGGACCCAATGCCATTCGCCCTGTCAACCCAGACATTCTCATTGCCAAGCTGCGTCCTCGGCAAAGAATC
TCCCTGTCAATGCACATGCACAAGGGCATTGGCGGCGACCACGCCAAGTTCTCGCCCGTTGCCACTGCCTCGTAC
CGCCTGATGCCAACTATTGACATTGTGAGCCCCATTGTCGGAGCTGATGCGCAAAAATTGGCCGAGTGCTTTCCT
CAAGGGGTCATTGGGCTCGAGCCCGTCTCGCCTGACGAGGCTGCCCGTCCGGCAAGCGGCTACCAGGGCCATGTT
GGAGAGCTCAAGGCGGTTGTGCTTGATGCCATGCGGGATACAGTCAGCAGAGAGTGTCTGCGTCACCCCGAGTTT
CAAGACAAGGTCAAATTGGGACGCCGTCGCGACCACTTCATCTTTTCCATTGAGAGTGTCTGTCAGTGGGACAGT
GACGAGCTTTTCCTCGAGGCTGTCAAGCACCTCAAACTCAAGTGCAAAAGGCTTGAGAGGCAGCTTGTCAACATG
GTCCGATGA
Transcript >OphauB2|2932
ATGTCTTCTGCCAGGTCAGCAGCTTGGAGCGCCGAGGGGCTGAAGCGCCGCAACAGGGTGGGAATCAACAAGGAA
ACGGTAACGAATGTGACATCTACCGACTTTCCAGGCCATGTTCCAGGCGAGGACATGGCCTACTCGCTCGAGCGG
TTCCGCGAGGCAGTCAGCGTCGTCCTTCACCAAAACAAGGGCAACTGGGCGTCCTTTTCCCTCATTGGCGTCGAC
GCATCATTGTCCAACGCCTTTCGACGCATCATGCTGGCCGAGATTGAAACTCTAGCGGTGGAAAATGTCTTCATC
GAGGACAACACGTCAGTCATTCAAGACGAAGTGCTGGCACATCGGCTGGGCCTGATTCCCTTTGACGGCGGGCGC
GAGGGCCTGCACCACTTCCTCAAGGGCTATAGCAAGGCCAAGGAAGGCGAGGACCCGTATGCCCACTGCTTCGAC
TGGAACACGGTGCGGCTGGAGCTCGACGTGACGTGCACGCACAAGCGCGACGCGGCGCCCACAGAAACCGATCCC
GACAGGCTCTACCACCACGCCAACGTCTACGCGCGAGACATTGTCTTTGTGCCGACGGGCCGGCAGGTGGACTAC
TTTTCAGGACCCAATGCCATTCGCCCTGTCAACCCAGACATTCTCATTGCCAAGCTGCGTCCTCGGCAAAGAATC
TCCCTGTCAATGCACATGCACAAGGGCATTGGCGGCGACCACGCCAAGTTCTCGCCCGTTGCCACTGCCTCGTAC
CGCCTGATGCCAACTATTGACATTGTGAGCCCCATTGTCGGAGCTGATGCGCAAAAATTGGCCGAGTGCTTTCCT
CAAGGGGTCATTGGGCTCGAGCCCGTCTCGCCTGACGAGGCTGCCCGTCCGGCAAGCGGCTACCAGGGCCATGTT
GGAGAGCTCAAGGCGGTTGTGCTTGATGCCATGCGGGATACAGTCAGCAGAGAGTGTCTGCGTCACCCCGAGTTT
CAAGACAAGGTCAAATTGGGACGCCGTCGCGACCACTTCATCTTTTCCATTGAGAGTGTCTGTCAGTGGGACAGT
GACGAGCTTTTCCTCGAGGCTGTCAAGCACCTCAAACTCAAGTGCAAAAGGCTTGAGAGGCAGCTTGTCAACATG
GTCCGATGA
Gene >OphauB2|2932
ATGTCTTCTGCCAGGTCAGCAGCTTGGAGCGCCGAGGGGCTGAAGCGCCGCAACGTAAGTAGTTGCACCTTGGGA
CGATATGAGCTCAACAAGGGCTAAGCGACAAGTAGAGGGTGGGAATCAACAAGGAAACGGTAACGAATGTGACAT
CTACCGACTTTCCAGGCCATGTTCCAGGCGAGGACATGGCCTACTCGCTCGAGCGGTTCCGCGAGGCAGTCAGCG
TCGTCCTTCACCAAAACAAGGGCAACTGGGCGTCCTTTTCCCTCATTGGCGTCGACGCATCATTGTCCAACGCCT
TTCGACGCATCATGCTGGCCGAGATTGAAACTCTAGCGGTGGAAAATGTCTTCATCGAGGACAACACGTCAGTCA
TTCAAGACGAAGTGCTGGCACATCGGCTGGGCCTGATTCCCTTTGACGGCGGGCGCGAGGGCCTGCACCACTTCC
TCAAGGGCTATAGCAAGGCCAAGGAAGGCGAGGACCCGTATGCCCACTGCTTCGACTGGAACACGGTGCGGCTGG
AGCTCGACGTGACGTGCACGCACAAGCGCGACGCGGCGCCCACAGAAACCGATCCCGACAGGCTCTACCACCACG
CCAACGTCTACGCGCGAGACATTGTCTTTGTGCCGACGGGCCGGCAGGTGGACTACTTTTCAGGACCCAATGCCA
TTCGCCCTGTCAACCCAGACATTCTCATTGCCAAGCTGCGTCCTCGGCAAAGAATCTCCCTGTCAATGCACATGC
ACAAGGGCATTGGCGGCGACCACGCCAAGTTCTCGCCCGTTGCCACTGCCTCGTACCGCCTGATGCCAACTATTG
ACATTGTGAGCCCCATTGTCGGAGCTGATGCGCAAAAATTGGCCGAGTGCTTTCCTCAAGGGGTCATTGGGCTCG
AGCCCGTCTCGCCTGACGAGGCTGCCCGTCCGGCAAGCGGCTACCAGGGCCATGTTGGAGAGCTCAAGGCGGTTG
TGCTTGATGCCATGCGGGATACAGTCAGCAGAGAGTGTCTGCGTCACCCCGAGTTTCAAGACAAGGTCAAATTGG
GACGCCGTCGCGACCACTTCATCTTTTCCATTGAGAGTGTCTGTCAGTGGGACAGTGACGAGCTTTTCCTCGAGG
CTGTCAAGCACCTCAAACTCAAGTGCAAAAGGCTTGAGAGGCAGCTTGTCAACATGGTCCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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