Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2922
Gene name
LocationContig_2:69248..71253
Strand-
Gene length (bp)2005
Transcript length (bp)1827
Coding sequence length (bp)1827
Protein length (aa) 609

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01424 R3H R3H domain 2.4E-09 325 379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-05 181 251

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09868|CIP2_SCHPO RNA-binding post-transcriptional regulator cip2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip2 PE=1 SV=1 174 377 1.0E-50
sp|O42923|CIP1_SCHPO RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip1 PE=1 SV=1 173 396 2.0E-39
sp|P34217|PIN4_YEAST RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIN4 PE=1 SV=1 162 282 2.0E-39

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2922
MSQQHHDMGYVDYAAANRSSSASRQTYGASPAFASGLSLPRQTQRPFDTPLGSSSLYPADRMGAFHPRAMDTMTA
AGGIPAGYMLDSGHTWSYPAPSVATVNGAVHGPNRQRSVNRRAALPPNWTDHTQLNMPNNLQPFHGSVNGIHLAN
GGLRVEQGPPHTSPDLRSTASDGDQLIPTAIVIKNIPFAVRKETLASIMLEMNLPQPYAFNYHFDNGVFRGLAFA
NFQSAEDTRVVIEAMNGMEVHGRKLRVEYKKMLPEAERERIEREKRERRGQLEEQHRAPILHQQSSFQSLGSMSQ
TQQRNPAGHLGDVDLNDPQTLEFYTELVMFKRDDAREILVFPPSIMPEHRRSIHILAHHMGLEHQSVGEADSRQL
TVLKRQQPSPTSNVANPAVANSLDMHKRGLSRAATFDFAADRESRAASSNYPHVVGRQGPTLELPGSPDGGGIPN
NLRAAKSFADLRSFTPSPSQASSSYLAPGMSGLGGGATARFGDYMGHAQSIHSANSGTPGPKNDGGLVAGMNSLS
LSPFDSSTSLSSQTRTPGAIGSQRPGVSGGSSKGAPERQPRGPEWETSGGFGRSRTNGHLQRESDSSDNASRTVP
TSASVRYH*
Coding >OphauB2|2922
ATGAGTCAACAGCACCATGATATGGGCTACGTCGACTACGCAGCCGCCAATCGCTCCTCGAGCGCTTCCAGGCAG
ACCTATGGTGCCTCTCCTGCATTTGCATCGGGCCTCTCCCTTCCCCGCCAGACGCAGCGGCCTTTTGACACCCCC
TTGGGCTCTTCATCTCTGTACCCTGCCGACCGAATGGGCGCCTTCCACCCCAGGGCCATGGACACCATGACGGCT
GCCGGGGGCATTCCCGCCGGCTACATGCTTGACAGTGGTCACACGTGGAGCTACCCTGCCCCCAGCGTGGCTACT
GTCAATGGTGCCGTTCATGGCCCTAACCGTCAAAGGAGCGTCAATCGGCGTGCCGCCCTACCTCCGAACTGGACC
GACCACACTCAGTTGAATATGCCCAACAATCTACAGCCTTTTCACGGCTCCGTGAATGGTATACACTTGGCAAAT
GGTGGCCTGCGTGTTGAACAGGGCCCGCCGCATACGTCGCCTGATTTACGTTCGACGGCCTCTGATGGTGACCAA
CTCATTCCAACGGCGATTGTAATCAAGAACATACCTTTTGCAGTGCGCAAGGAAACACTGGCTTCCATTATGCTC
GAGATGAACTTGCCCCAGCCTTACGCCTTCAACTACCATTTTGACAATGGCGTCTTTCGTGGGCTGGCTTTTGCA
AACTTTCAATCCGCCGAAGACACGAGGGTTGTAATTGAGGCCATGAATGGCATGGAAGTCCATGGCCGTAAATTG
CGTGTTGAATACAAGAAGATGCTGCCAGAGGCGGAGCGCGAAAGAATCGAGAGAGAGAAGCGGGAGCGTCGCGGC
CAGCTCGAGGAACAACATCGCGCTCCCATTTTACACCAACAGAGCTCTTTTCAATCTCTTGGAAGCATGTCCCAG
ACCCAACAGCGGAATCCTGCGGGACACCTAGGAGATGTAGACCTCAATGACCCCCAAACCCTCGAGTTCTACACT
GAACTAGTCATGTTCAAACGCGACGATGCGCGCGAGATTCTTGTGTTTCCTCCCTCGATAATGCCCGAGCATAGG
CGATCGATTCACATTCTTGCCCATCATATGGGACTTGAGCACCAGTCGGTTGGAGAAGCCGACTCGCGGCAGCTG
ACAGTACTCAAACGCCAGCAACCTTCGCCCACATCCAATGTCGCAAATCCTGCTGTAGCCAACAGCCTTGATATG
CACAAGCGCGGGCTCAGTCGTGCTGCAACCTTTGATTTTGCCGCCGATCGGGAGAGTCGGGCGGCGAGTAGCAAC
TACCCCCATGTCGTGGGTCGCCAAGGCCCTACTTTGGAGCTTCCTGGCAGCCCCGACGGTGGTGGCATTCCAAAC
AACCTGCGCGCAGCCAAGAGCTTTGCCGATCTGCGCTCATTTACCCCCAGCCCCTCGCAAGCATCGTCGAGTTAC
CTGGCACCGGGCATGAGTGGCTTGGGCGGCGGCGCAACAGCTCGGTTTGGAGACTACATGGGCCATGCGCAGTCG
ATTCATTCGGCAAACTCTGGAACTCCCGGTCCCAAGAATGACGGCGGCCTCGTGGCTGGCATGAATAGTCTCAGT
TTAAGCCCATTCGACTCAAGCACCTCACTGTCCTCGCAGACGCGGACTCCTGGCGCAATTGGAAGCCAGAGACCA
GGCGTTAGCGGTGGAAGCTCCAAGGGTGCCCCAGAAAGGCAGCCACGAGGTCCTGAATGGGAAACGTCTGGTGGC
TTTGGCCGAAGCAGGACAAATGGGCATTTACAACGCGAAAGTGATTCTTCCGACAATGCTTCCCGTACTGTGCCT
ACCTCTGCCAGCGTGCGATACCATTAG
Transcript >OphauB2|2922
ATGAGTCAACAGCACCATGATATGGGCTACGTCGACTACGCAGCCGCCAATCGCTCCTCGAGCGCTTCCAGGCAG
ACCTATGGTGCCTCTCCTGCATTTGCATCGGGCCTCTCCCTTCCCCGCCAGACGCAGCGGCCTTTTGACACCCCC
TTGGGCTCTTCATCTCTGTACCCTGCCGACCGAATGGGCGCCTTCCACCCCAGGGCCATGGACACCATGACGGCT
GCCGGGGGCATTCCCGCCGGCTACATGCTTGACAGTGGTCACACGTGGAGCTACCCTGCCCCCAGCGTGGCTACT
GTCAATGGTGCCGTTCATGGCCCTAACCGTCAAAGGAGCGTCAATCGGCGTGCCGCCCTACCTCCGAACTGGACC
GACCACACTCAGTTGAATATGCCCAACAATCTACAGCCTTTTCACGGCTCCGTGAATGGTATACACTTGGCAAAT
GGTGGCCTGCGTGTTGAACAGGGCCCGCCGCATACGTCGCCTGATTTACGTTCGACGGCCTCTGATGGTGACCAA
CTCATTCCAACGGCGATTGTAATCAAGAACATACCTTTTGCAGTGCGCAAGGAAACACTGGCTTCCATTATGCTC
GAGATGAACTTGCCCCAGCCTTACGCCTTCAACTACCATTTTGACAATGGCGTCTTTCGTGGGCTGGCTTTTGCA
AACTTTCAATCCGCCGAAGACACGAGGGTTGTAATTGAGGCCATGAATGGCATGGAAGTCCATGGCCGTAAATTG
CGTGTTGAATACAAGAAGATGCTGCCAGAGGCGGAGCGCGAAAGAATCGAGAGAGAGAAGCGGGAGCGTCGCGGC
CAGCTCGAGGAACAACATCGCGCTCCCATTTTACACCAACAGAGCTCTTTTCAATCTCTTGGAAGCATGTCCCAG
ACCCAACAGCGGAATCCTGCGGGACACCTAGGAGATGTAGACCTCAATGACCCCCAAACCCTCGAGTTCTACACT
GAACTAGTCATGTTCAAACGCGACGATGCGCGCGAGATTCTTGTGTTTCCTCCCTCGATAATGCCCGAGCATAGG
CGATCGATTCACATTCTTGCCCATCATATGGGACTTGAGCACCAGTCGGTTGGAGAAGCCGACTCGCGGCAGCTG
ACAGTACTCAAACGCCAGCAACCTTCGCCCACATCCAATGTCGCAAATCCTGCTGTAGCCAACAGCCTTGATATG
CACAAGCGCGGGCTCAGTCGTGCTGCAACCTTTGATTTTGCCGCCGATCGGGAGAGTCGGGCGGCGAGTAGCAAC
TACCCCCATGTCGTGGGTCGCCAAGGCCCTACTTTGGAGCTTCCTGGCAGCCCCGACGGTGGTGGCATTCCAAAC
AACCTGCGCGCAGCCAAGAGCTTTGCCGATCTGCGCTCATTTACCCCCAGCCCCTCGCAAGCATCGTCGAGTTAC
CTGGCACCGGGCATGAGTGGCTTGGGCGGCGGCGCAACAGCTCGGTTTGGAGACTACATGGGCCATGCGCAGTCG
ATTCATTCGGCAAACTCTGGAACTCCCGGTCCCAAGAATGACGGCGGCCTCGTGGCTGGCATGAATAGTCTCAGT
TTAAGCCCATTCGACTCAAGCACCTCACTGTCCTCGCAGACGCGGACTCCTGGCGCAATTGGAAGCCAGAGACCA
GGCGTTAGCGGTGGAAGCTCCAAGGGTGCCCCAGAAAGGCAGCCACGAGGTCCTGAATGGGAAACGTCTGGTGGC
TTTGGCCGAAGCAGGACAAATGGGCATTTACAACGCGAAAGTGATTCTTCCGACAATGCTTCCCGTACTGTGCCT
ACCTCTGCCAGCGTGCGATACCATTAG
Gene >OphauB2|2922
ATGAGTCAACAGCACCATGATATGGGCTACGTCGACTACGCAGCCGCCAATCGCTCCTCGAGCGCTTCCAGGCAG
ACCTATGGTGCCTCTCCTGCATTTGCATCGGGCCTCTCCCTTCCCCGCCAGACGCAGCGGCCTTTTGACACCCCC
TTGGGCTCTTCATCTCTGTACCCTGCCGACCGAATGGGCGCCTTCCACCCCAGGGCCATGGACACCATGACGGCT
GCCGGGGGCATTCCCGCCGGCTACATGCTTGACAGTGGTCACACGTGGAGCTACCCTGCCCCCAGCGTGGCTACT
GTCAATGGTGCCGTTCATGGCCCTAACCGTCAAAGGAGCGTCAATCGGCGTGCCGCCCTACCTCCGGTGTGTCCA
TGCAGGCCATTGTAGAAGTCTCAATTGTCCCACACGTGAGCTAATTCTAGCCATTTAGAACTGGACCGACCACAC
TCAGTTGAATATGCCCAACAATCTACAGCCTTTTCACGGCTCCGTGAATGGTATACACTTGGCAAATGGTGGCCT
GCGTGTTGAACAGGGCCCGCCGCATACGTCGCCTGATTTACGTTCGACGGCCTCTGATGGTGACCAACTCATTCC
AACGGCGATTGTAATCAAGAACATACCTTTTGCAGTGCGCAAGGAAACACTGGCTTCCATTATGCTCGAGATGAA
CTTGCCCCAGCCTTACGCCTTCAACTACCATTTTGACAATGGCGTCTTTCGTGGGCTGGCTTTTGCAAACTTTCA
ATCCGCCGAAGACACGAGGGTTGTAATTGAGGCCATGAATGGCATGGAAGTCCATGGCCGTAAATTGCGTGTTGA
ATACAAGAAGATGCTGCCAGAGGCGGAGCGCGAAAGAATCGAGAGAGAGAAGCGGGAGCGTCGCGGCCAGCTCGA
GGAACAACATCGCGCTCCCATTTTACACCAACAGAGCTCTTTTCAATCTCTTGGAAGCATGTCCCAGACCCAACA
GCGGAATCCTGCGGGACACCTAGGTTTGTTTTCTTTTTCTGCCTTGCCATCAGGTTTCCATCTTGGCTGACACGC
ATGCCCAGGAGATGTAGACCTCAATGACCCCCAAACCCTCGAGTTCTACACTGAACTAGTCATGTTCAAACGCGA
CGATGCGCGCGAGATTCTTGTGTTTCCTCCCTCGATAATGCCCGAGCATAGGCGATCGATTCACATTCTTGCCCA
TCATATGGGACTTGAGCACCAGTCGGTTGGAGAAGCCGACTCGCGGCAGCTGACAGTACTCAAACGCCAGCAACC
TTCGCCCACATCCAATGTCGCAAATCCTGCTGTAGCCAACAGCCTTGATATGCACAAGCGCGGGCTCAGTCGTGC
TGCAACCTTTGATTTTGCCGCCGATCGGGAGAGTCGGGCGGCGAGTAGCAACTACCCCCATGTCGTGGGTCGCCA
AGGCCCTACTTTGGAGCTTCCTGGCAGCCCCGACGGTGGTGGCATTCCAAACAACCTGCGCGCAGCCAAGAGCTT
TGCCGATCTGCGCTCATTTACCCCCAGCCCCTCGCAAGCATCGTCGAGTTACCTGGCACCGGGCATGAGTGGCTT
GGGCGGCGGCGCAACAGCTCGGTTTGGAGACTACATGGGCCATGCGCAGTCGATTCATTCGGCAAACTCTGGAAC
TCCCGGTCCCAAGAATGACGGCGGCCTCGTGGCTGGCATGAATAGTCTCAGTTTAAGCCCATTCGACTCAAGCAC
CTCACTGTCCTCGCAGACGCGGACTCCTGGCGCAATTGGAAGCCAGAGACCAGGCGTTAGCGGTGGAAGCTCCAA
GGGTGCCCCAGAAAGGCAGCCACGAGGTCCTGAATGGGAAACGTCTGGTGGCTTTGGCCGAAGCAGGACAAATGG
GCATTTACAACGCGAAAGTGGTGTGTTGAGCAACAATTTGAAGCTGGATCATGTGGGCTGACCAAGATTAGATTC
TTCCGACAATGCTTCCCGTACTGTGCCTACCTCTGCCAGCGTGCGATACCATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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